NONHSAT026223

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT026223

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

564 nt

Genomic location

chr12-:7239877..7240440

Exon number

1

Exons

7239877..7240440

Genome context

Sequence
000001 ATGTCCTTAA GTCACAGtta attcatttaa tgcacacttt aagtgtctac tgtcaggcac tgtcctagat gtgggaggtt 000080
000081 cagtaaaaag aaacccacat agtcacacag cctttgtgga gctcacattt gaatgTTGCA TCAAGTCGAG TTCACCTGAT 000160
000161 GCATTGTTCT TTACTCCAAG GTGCTTCCAG CTCCATCAGG AGGATTGGGT GGGTGTCCTG GGTCCAGAAG AATGGAGACT 000240
000241 ACCAACCTCT TTGCTCCTAT TACAACCCTC CCTTGCCTGC ACCACCCACT GCCCTTACTT TTGCATTTGT TATTCACATC 000320
000321 ATAGAATTTA AAGCAAGTCA CACGGTTTCT CACATTACCT ACATTTTACT CAGACGTTCT AGTTCTCATA CACATTCTCT 000400
000401 TACAACCTTT TCCAGGGCTA ACTCCATGGA ATGAtttttg gtctttttgt tttgtcttgt tttgtttttg agagagagtc 000480
000481 ttgctctgtc acccaggcag tggcatggtc tcagctcact gtaaactccg cctcccaagt tcaagtgttt ctcctgGATT 000560
000561 CAAG
[back to top]

Predicted Small Protein

Name NONHSAT026223_smProtein_158:433
Length 92
Molecular weight 10261.6306
Aromaticity 0.10989010989
Instability index 77.889010989
Isoelectric point 9.50823974609
Runs 10
Runs residual 0.0235805860806
Runs probability 0.0944532768062
Amino acid sequence MHCSLLQGASSSIRRIGWVSWVQKNGDYQPLCSYYNPPLPAPPTALTFAFVIHIIEFKAS
HTVSHITYILLRRSSSHTHSLTTFSRANSME
Secondary structure LLLLLLLLLLLLLEEEEEEEEEELLLLLLLLLLLLLLLLLLLLLHHHHHEEEEEEEEELL
LLLLEEEEEEEEELLLLLLLLLEEEELLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH
HHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTT
TTTTiiiiiiiiiiiiiiiiiiiiiiiiiii