NONHSAT026284
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026284 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3129 nt |
Genomic location |
chr12+:8244356..8250367 |
Exon number |
3 |
Exons |
8244356..8245651,8248197..8248299,8248638..8250367 |
Genome context |
|
Sequence |
000001 TTTCCACAGG GCGCAGTGCT TTCATTGGCA TTGGCTTCAC AGATCGGGGA GATGCCTTCG ACTTTAATGT CTCCTTGCAG 000080
000081 GATCACTTCA AGTGAGTGAA GCTTGTCCTT AGTTACGAGG CTGAATGCTT ATAGGAATGC TGCTTCTCAC ATGAATGGGC 000160 000161 AGTATCTCTT TTCCTCCTGG TTTCTTTGTT TCTTAAACTA TTTCATTGTG AATATAAATC TCCCCATTCA CTTTTGTTTC 000240 000241 CTTAGGTCAT CTTTGTATCT ATTCTGTTTC CTTTCCTTAT AGCCTGCAAT ATATTTCAGA TCCCTTGTGC AGTAGTTTGA 000320 000321 AATGATGCTC TGTCGAATTT GCCCCGTCTT TTAGGTGGTA GAGGGAGGCC TATGGTAACA GCAGGGCTTT ATGTGGGGAG 000400 000401 TCGTGTGCCA CTCTTGTTAC CTTAtgtagc tgacatgttt tgtgactttt gcaacatttc tttagcccac ttgattttgg 000480 000481 tgcagctgtg gttgacagca ctgtgcacac tgtcagcttc ctacctcaag agcaagcata tctctccttt tctgccttag 000560 000561 gactctctga agttatagaa agctaagagc aagctttaac ttggaaagac taagaaacta acaccccctc aggagcagcc 000640 000641 ctcaactgtg gggaatggga attggtggct aaataccatc cttctggaag gggcaattct aatacgtatt ccgtgagatt 000720 000721 tctcagagag tccccagtgg aattgaaccc cagttgtttt ctttcttggc ttttttccct tctgtttctc actctttttt 000800 000801 atctctcact gtgttttctg gaatctcatt tcataaaagt aaatacaccc aaatttgtat gtcagactct gctttcagga 000880 000881 aatctcaaac taagataACT TGCTGTGTTC CCAAAGGTGG GTAAAGCAGG AATCTGAGAT TTCCAAGGAA TCTCAAGAAA 000960 000961 TGGATGCTCG TCCTAAGTTG GATCTGGGCT TCAAGGAAGG ACAAACCATC AAGTTGTGTA TCGGGGTGAG TATGGTTTTT 001040 001041 AAAAATTTTG TTTTCCTGTG CTTCCATAAG CCTATGACAT CTTTCTCTTG CTCTTCTTTT TTTCTTTTGT AGAACATTAC 001120 001121 AAACAAGAAA GGAGGTGCTT CTAAGCCCAG GACTGCAAGG GGTGGGGGTC TGAGCTTACT CCCACCCCCG CCAGGAGGCA 001200 001201 AAGTCACTAT TCCCCCACCA TCCTCCTCAG TTGCCATCAG CAATCATGTC ACCCCACCAC CCATTCCGAA ATCTAACCAT 001280 001281 GGAGGCAGTG ATGCAGATAT CCTTTTAGAT TTGGATTCTC CTGCTCCTGT CACGACACCA GCACCAACTC CAGTTTCTGT 001360 001361 AAGCAATGAC TTGTGGGGAG ACTTCAGCAC TGCCTCCAGC TCTGTTCCAA ACCAGGCACC ACAGCCATCC AACTGGGTCC 001440 001441 AGTTCTGAAT GGCATTGGCA GGACATTAAG GACAGACTTG AGGAATAAAA ATGACCTTGA GGGCACCAAT CTGTGAGGGA 001520 001521 AGTTAGGAAC CCATTTCCTC CCCAGAACCA GAATGACTGG ACAATCTTTT TCATAGCTTC TCCATCACAT TCAAGCTGGT 001600 001601 TTATGTCACT CCCCTGTGTT GTTACTTGTA CAGCCAAGAA AGTATCTGTT ATCTCCTGCG TAGTACCAAG GTAGGGGACT 001680 001681 AGTGGATCTT ATCATAGTTT TGGCTGACTA TGCAGGGCTT AAAAGGCCAG CGTCTGTTTG AGGGGGAATG ACCTCTAACA 001760 001761 TCTGTAAAAT TTGTCTCATC TTTTAATTTC TTTAACTTAT TTCAAAATCA TCTCATGACC CTTGTGTGCC TCTTTGTGAA 001840 001841 GCCCTATTTA GCAATTTCAG GGGAGTCAAA AACCTTGCAA CTTCCTTCTC CACTAACCCA GGACTAAAAA TGGACAGGCT 001920 001921 GACCTCAGTG TTTACAAATT CAGAATTTTG ATAGGGGTAG ATATGGAGAA AGACCTATTT CCTGGGTCTC TGCTGTGTAG 002000 002001 TCTCCTTCAG GCTTATTGTG CTCAGTGAAC ATCCAGTGCT GGGTGCAGCT CCATCACCCT CTTGTGTGTT TACATGTCTC 002080 002081 TTTCTATGAT AAGAGGGTTG TGTTGGTGGC ACCTCCACTA CTCTTTTCTG TTTGTTGAGT TTGAATTGTG TTAACATCTT 002160 002161 TGATCAGTGG GTGTATCTGT AATGAAGGAG GTTCAAGAGG CTGTGCTTTC CAAGTGATAG TCTATAGGAG TGTTTAATTT 002240 002241 CTTGCAGCTC CATCTGGTTG CTGCATTTGA AGCATGGCAT TAATTTGTAT TTGCCCTGTT CTTTGACCTA AAGTTGAAGG 002320 002321 GTTTAGAGTT TTTAACCTGA TCTGTAGAGC AGAGAGGTTG AAAGCACTTA ACTCTTGTTT AGTATCCTCA TTGCCTTGCT 002400 002401 GCCTGGGTAT CTGGCCCCTT TCCATAAACA TTTCTTTTCA GTTCATGTAG TTCTTTAATA GAAAGCTGCT ATTATGTATA 002480 002481 TTGTCATTTG TGAAGGAAGT TGGAGAGTCA CAGCTTTACT GTGACAGGTT TTGCCCAAGG CTTTGATACC TGTCACCCAG 002560 002561 GGTATCTTAA AAGCAAGTTG TTCTCCCACT ACTTTCCTTT CCCTCTGCCC TGCCATTCCT ATTACAATGC TGTGAAAAAA 002640 002641 GTTCTGCTTC TTAGGTGAAT GGGTACTTTC TATTTTGTTT CTAAACGAGC AATTTTGAGG ATGAAATGGG AAGATATCAT 002720 002721 TGCTTCCTTT TTGCACCTAT TGGGTATGTA CACTCTGGCC GAAGGGAGTC CTTATGTTTA GTTTCAAAAT ATATTACTTT 002800 002801 CCTGGATTCT CTTCTTCACT TTTTCTGACT TTGGGTCCAT TTTCTTTTCA TTGCCTCCTT TTCCAGGCAG CTCTATTCTT 002880 002881 GCAGAGCCAT AGCAGGACAT GTTAAAATTC CAATAGAAAA CACTAAAAGG AAAGTCTGTG GAATCACTAG TGACTAAATA 002960 002961 CTGGGAACCT ATTTTCTCAA TCTTCCTCCA TGTTGTGTTC TTTGTATTCT TGAGATGATA ATATATTATG TATTTGAATT 003040 003041 CCTGAAAAAT GGAAAATGTT TAAGATATAT GTATATAAAG TGTATGCTGT ATTGGTGCAA TAATGGTAAT TAAAAATATG 003120 003121 AAAAAAGTG |
Predicted Small Protein
Name | NONHSAT026284_smProtein_371:559 |
Length | 63 |
Molecular weight | 6856.2074 |
Aromaticity | 0.112903225806 |
Instability index | 55.85 |
Isoelectric point | 7.74627685547 |
Runs | 7 |
Runs residual | 0.0407373271889 |
Runs probability | 0.0184974890857 |
Amino acid sequence | MVTAGLYVGSRVPLLLPYVADMFCDFCNISLAHLILVQLWLTALCTLSASYLKSKHISPF LP |
Secondary structure | LEEELEEELLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL LL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LL |
PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii ii |