NONHSAT026284

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT026284

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3129 nt

Genomic location

chr12+:8244356..8250367

Exon number

3

Exons

8244356..8245651,8248197..8248299,8248638..8250367

Genome context

Sequence
000001 TTTCCACAGG GCGCAGTGCT TTCATTGGCA TTGGCTTCAC AGATCGGGGA GATGCCTTCG ACTTTAATGT CTCCTTGCAG 000080
000081 GATCACTTCA AGTGAGTGAA GCTTGTCCTT AGTTACGAGG CTGAATGCTT ATAGGAATGC TGCTTCTCAC ATGAATGGGC 000160
000161 AGTATCTCTT TTCCTCCTGG TTTCTTTGTT TCTTAAACTA TTTCATTGTG AATATAAATC TCCCCATTCA CTTTTGTTTC 000240
000241 CTTAGGTCAT CTTTGTATCT ATTCTGTTTC CTTTCCTTAT AGCCTGCAAT ATATTTCAGA TCCCTTGTGC AGTAGTTTGA 000320
000321 AATGATGCTC TGTCGAATTT GCCCCGTCTT TTAGGTGGTA GAGGGAGGCC TATGGTAACA GCAGGGCTTT ATGTGGGGAG 000400
000401 TCGTGTGCCA CTCTTGTTAC CTTAtgtagc tgacatgttt tgtgactttt gcaacatttc tttagcccac ttgattttgg 000480
000481 tgcagctgtg gttgacagca ctgtgcacac tgtcagcttc ctacctcaag agcaagcata tctctccttt tctgccttag 000560
000561 gactctctga agttatagaa agctaagagc aagctttaac ttggaaagac taagaaacta acaccccctc aggagcagcc 000640
000641 ctcaactgtg gggaatggga attggtggct aaataccatc cttctggaag gggcaattct aatacgtatt ccgtgagatt 000720
000721 tctcagagag tccccagtgg aattgaaccc cagttgtttt ctttcttggc ttttttccct tctgtttctc actctttttt 000800
000801 atctctcact gtgttttctg gaatctcatt tcataaaagt aaatacaccc aaatttgtat gtcagactct gctttcagga 000880
000881 aatctcaaac taagataACT TGCTGTGTTC CCAAAGGTGG GTAAAGCAGG AATCTGAGAT TTCCAAGGAA TCTCAAGAAA 000960
000961 TGGATGCTCG TCCTAAGTTG GATCTGGGCT TCAAGGAAGG ACAAACCATC AAGTTGTGTA TCGGGGTGAG TATGGTTTTT 001040
001041 AAAAATTTTG TTTTCCTGTG CTTCCATAAG CCTATGACAT CTTTCTCTTG CTCTTCTTTT TTTCTTTTGT AGAACATTAC 001120
001121 AAACAAGAAA GGAGGTGCTT CTAAGCCCAG GACTGCAAGG GGTGGGGGTC TGAGCTTACT CCCACCCCCG CCAGGAGGCA 001200
001201 AAGTCACTAT TCCCCCACCA TCCTCCTCAG TTGCCATCAG CAATCATGTC ACCCCACCAC CCATTCCGAA ATCTAACCAT 001280
001281 GGAGGCAGTG ATGCAGATAT CCTTTTAGAT TTGGATTCTC CTGCTCCTGT CACGACACCA GCACCAACTC CAGTTTCTGT 001360
001361 AAGCAATGAC TTGTGGGGAG ACTTCAGCAC TGCCTCCAGC TCTGTTCCAA ACCAGGCACC ACAGCCATCC AACTGGGTCC 001440
001441 AGTTCTGAAT GGCATTGGCA GGACATTAAG GACAGACTTG AGGAATAAAA ATGACCTTGA GGGCACCAAT CTGTGAGGGA 001520
001521 AGTTAGGAAC CCATTTCCTC CCCAGAACCA GAATGACTGG ACAATCTTTT TCATAGCTTC TCCATCACAT TCAAGCTGGT 001600
001601 TTATGTCACT CCCCTGTGTT GTTACTTGTA CAGCCAAGAA AGTATCTGTT ATCTCCTGCG TAGTACCAAG GTAGGGGACT 001680
001681 AGTGGATCTT ATCATAGTTT TGGCTGACTA TGCAGGGCTT AAAAGGCCAG CGTCTGTTTG AGGGGGAATG ACCTCTAACA 001760
001761 TCTGTAAAAT TTGTCTCATC TTTTAATTTC TTTAACTTAT TTCAAAATCA TCTCATGACC CTTGTGTGCC TCTTTGTGAA 001840
001841 GCCCTATTTA GCAATTTCAG GGGAGTCAAA AACCTTGCAA CTTCCTTCTC CACTAACCCA GGACTAAAAA TGGACAGGCT 001920
001921 GACCTCAGTG TTTACAAATT CAGAATTTTG ATAGGGGTAG ATATGGAGAA AGACCTATTT CCTGGGTCTC TGCTGTGTAG 002000
002001 TCTCCTTCAG GCTTATTGTG CTCAGTGAAC ATCCAGTGCT GGGTGCAGCT CCATCACCCT CTTGTGTGTT TACATGTCTC 002080
002081 TTTCTATGAT AAGAGGGTTG TGTTGGTGGC ACCTCCACTA CTCTTTTCTG TTTGTTGAGT TTGAATTGTG TTAACATCTT 002160
002161 TGATCAGTGG GTGTATCTGT AATGAAGGAG GTTCAAGAGG CTGTGCTTTC CAAGTGATAG TCTATAGGAG TGTTTAATTT 002240
002241 CTTGCAGCTC CATCTGGTTG CTGCATTTGA AGCATGGCAT TAATTTGTAT TTGCCCTGTT CTTTGACCTA AAGTTGAAGG 002320
002321 GTTTAGAGTT TTTAACCTGA TCTGTAGAGC AGAGAGGTTG AAAGCACTTA ACTCTTGTTT AGTATCCTCA TTGCCTTGCT 002400
002401 GCCTGGGTAT CTGGCCCCTT TCCATAAACA TTTCTTTTCA GTTCATGTAG TTCTTTAATA GAAAGCTGCT ATTATGTATA 002480
002481 TTGTCATTTG TGAAGGAAGT TGGAGAGTCA CAGCTTTACT GTGACAGGTT TTGCCCAAGG CTTTGATACC TGTCACCCAG 002560
002561 GGTATCTTAA AAGCAAGTTG TTCTCCCACT ACTTTCCTTT CCCTCTGCCC TGCCATTCCT ATTACAATGC TGTGAAAAAA 002640
002641 GTTCTGCTTC TTAGGTGAAT GGGTACTTTC TATTTTGTTT CTAAACGAGC AATTTTGAGG ATGAAATGGG AAGATATCAT 002720
002721 TGCTTCCTTT TTGCACCTAT TGGGTATGTA CACTCTGGCC GAAGGGAGTC CTTATGTTTA GTTTCAAAAT ATATTACTTT 002800
002801 CCTGGATTCT CTTCTTCACT TTTTCTGACT TTGGGTCCAT TTTCTTTTCA TTGCCTCCTT TTCCAGGCAG CTCTATTCTT 002880
002881 GCAGAGCCAT AGCAGGACAT GTTAAAATTC CAATAGAAAA CACTAAAAGG AAAGTCTGTG GAATCACTAG TGACTAAATA 002960
002961 CTGGGAACCT ATTTTCTCAA TCTTCCTCCA TGTTGTGTTC TTTGTATTCT TGAGATGATA ATATATTATG TATTTGAATT 003040
003041 CCTGAAAAAT GGAAAATGTT TAAGATATAT GTATATAAAG TGTATGCTGT ATTGGTGCAA TAATGGTAAT TAAAAATATG 003120
003121 AAAAAAGTG
[back to top]

Predicted Small Protein

Name NONHSAT026284_smProtein_371:559
Length 63
Molecular weight 6856.2074
Aromaticity 0.112903225806
Instability index 55.85
Isoelectric point 7.74627685547
Runs 7
Runs residual 0.0407373271889
Runs probability 0.0184974890857
Amino acid sequence MVTAGLYVGSRVPLLLPYVADMFCDFCNISLAHLILVQLWLTALCTLSASYLKSKHISPF
LP
Secondary structure LEEELEEELLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL
LL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL
LL
PiMo oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii
ii