NONHSAT027026
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027026 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1743 nt |
Genomic location |
chr12+:13132771..13137579 |
Exon number |
3 |
Exons |
13132771..13132822,13132934..13133325,13136278..13137579 |
Genome context |
|
Sequence |
000001 AAAAAAACAT ACACACACCC CTGATTCCAG AAACACAACA GGAGCTGACT CAAAAGGGAG TGTCTGGTGC AGGCATGCAG 000080
000081 GGAGGAAGAA TGACTCTGAG CTTGACCATT CAACTTCGAA ACTTTAACAT CAATGGATCA GCACACACTG GTGTACGGTC 000160 000161 TGCTATGCAT GCAGCCCTGT GCTAGGCAAA AGAAGTATCA GACCAGGAAC TGACAGCCTC ACTGCAACAG GAAGAGAGGC 000240 000241 TTCACACAAT AAGCGTTTCA TTCAACCAGG CTGGACCTGT GCTTATTGAG TTGAACATCA CTGAGCACAA AATGCAAGCC 000320 000321 AGACACCATA AGAGCTGTAA GGATGATAAA GATGTCTTTC TACCCTCGAG AGCTCTAAGT GTGGTCAGGA GAGAAACACA 000400 000401 TGCAAAGATT ATGCTGGCTG GAAGGAAATG CTGGAATGAA GGTGGAAGCA TTCTATTCAT CTAAAAGCAC CGGTAATTAA 000480 000481 CGATGCTAAT AAATGTATAA TCCCTTTGTA AACATCTCTT CACAAGGTCA TAAAGAAGGA AGACTGAATG AAGGACGCCA 000560 000561 GGCTTTCATT TTAGAATTAA TTTTGTCATT GAATGCACTC ACTGCATTAT TTGATAGAGT ACTTTTGCAT TTGAAGTAGT 000640 000641 ACATTTGCCT TCTACCATCT CATTAACATT GCTTTCAACA GAATCAGAAA TAACACGAAC CACTGCAGGG TAATTTTGAA 000720 000721 TGCTCATTTG ACTATGCAGT GACATCAAGT GGCGAGTTGA GGAATGATCA TATGCTGTGT GAGAACTCCG TGTCAAAAAT 000800 000801 TCCATGGAGC CAGGCTAGAC ACCACATTTG GCACTTTCAG CTGTTTAGAT TTCAGAGAAT TAAAAGGAAA TGGTCACCGA 000880 000881 CCTGCCTTTG ATAGTACCCG TATACCCCTT CCCACCATAA GAAACCAGCG TTCCTTAGAG AAATGGCTAA TTCTAGCTCT 000960 000961 AGGGCAAGAA ATGCTAAGAT GTGCTCAAAA CATCTCATTA TACCAGCAAG CCAGGGAGCC ACCAACGACT ACTGGAGCTG 001040 001041 TGTCAAAAGG ACCAACAAAC CAACTTGAAG AGGCTCCCGC TGGCCAACAG TGGGGCAATT AGAGCATCAA TAAGAATAAT 001120 001121 ATCTGTAACA AACTGAAACG TATCAAATAT GTTTAAATTC ATATGTTTAT AATTACACTC AAAAAACGAA GATGCAGACC 001200 001201 ACTTTACCTT GAGGATGTTA CAGAATGAAA TTATCATTCT GAAAACTGGT AAATAAAGAG AAGGTATCAA GTAAGCATGT 001280 001281 ATCTGGCTTT TTCTATATGA AATAAAGGAA GCCAAATAGT AAACGAGGGG AAGTTTCTCT TTACTGAAAT ATTGCAGGTA 001360 001361 ATTAAAGAAG AAGGAGAAAC AGAGAACATT ATCGTTTTAT GGCCTCTAAT GGAACAAGAC ATCTAGGCAA TGATGAACTA 001440 001441 TGGTCACCAA CATCACTCAA TCAGGGACAA TCAGACACTG TGGGCCCCTG AAGGAAGTAA ACACCACCAC GTAGGAAATA 001520 001521 TTCTCACCAA AACTTCAAAA ACTTGAATCT GATCTAGTCT TTAGTTTCAA CTACTAATTT ACAGGCAATA CGGGGCTCAG 001600 001601 AGGGATGTGG TAAAATGTCA CGGAAATATA ATCAGCAAAA TCCAGTACAG ATAATAAGAA GACAAATGAT CCACAGATGG 001680 001681 AAAGGAAGAA TGTAAAGTTG TGTTGGTAAA GAAATTCACA GATTAATAAA AGCTTAAAAA TGT |
Predicted Small Protein
Name | NONHSAT027026_smProtein_311:463 |
Length | 51 |
Molecular weight | 5737.6705 |
Aromaticity | 0.06 |
Instability index | 56.54 |
Isoelectric point | 9.89190673828 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.00893049912657 |
Amino acid sequence | MQARHHKSCKDDKDVFLPSRALSVVRRETHAKIMLAGRKCWNEGGSILFI |
Secondary structure | LLLLLLLLLLLLLLLELLLHHHHHHHHHHHHHHHHHLLHHHLLLLEEEEL |
PRMN | - |
PiMo | - |