NONHSAT027029
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT027029 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2400 nt |
Genomic location |
chr12+:13153364..13193613 |
Exon number |
6 |
Exons |
13153364..13153414,13161028..13161089,13172446..13173378,13174948..13175095,13192384..13192604,13192644..13193613 |
Genome context |
|
Sequence |
000001 AGTGATGCGA AGGGCGGGCA GCAGGGCAGC AGTGCAGCAG TGCAGCAGTG CAGCAGTGCA GCAGTGCGGT TATGAGAATG 000080
000081 ATGGAACAGG AAGCAGGAGA GAACAGCTAC CACCATTCTT TCCTTATAGA TGATGAGAAG GAGGAGAAGA GGAAGAGAAT 000160 000161 GTGGAGGAAG TGAATATAGC TGCATCAAGG GATTCTTCTT TTAAACCTAC ATAATTTTTA AAAATCGACC TGTGCATCCC 000240 000241 AGCTCCCATT GGTGCAAACA AGTGATTTTG ATTTTGTACT TCAGTGCATG CCCTTAACCT TGGTGAAATG TCTTTGCCAC 000320 000321 TTCTTTCTGA GATGTACAAT CCTGAGTGAT TGCTCCCTCT CTGAATTTTT TGAATCCCTG CTTAATCTTC TCTACCTTTG 000400 000401 GCATTCTTTT GCATACTTTG AGGTTCAAGG TTTTAACTGT TAAGTATTAT GTTTGTATTT GCGTTTCTCC TTCTCCTTGC 000480 000481 TATTTTTGGA TAATTTTCTA AGAGGCAATA GAGAAATTCT GCTTTTATAC CACCGTATTT AATTGAAAAG ATGGAATCTG 000560 000561 CATTTTGAAG GTTTCAGTGT GATAGATGAC CTCAAGTTCT CTGATGTTCT TTCCATTGAG AGGTGGGGTC TACCTCCACT 000640 000641 TCCCCTTGAA TCTGGACTTG CTTCAGCCAC TCACTTATAT AACTAATAGA AGGTGGCAGA AATGACGGAG CATGACTTTT 000720 000721 GAGTTAAGTC AGAGAGGCCG TGCAGCTACT GCATTGTTTG CCGGTACACT TGCCCTTGGA GCCCTGGGCC ATCATGTAAG 000800 000801 AAGGCTGCCA TGCTGTGAGA ACACCTAAGC CACATGGAGA GGCCACATGA AAAAGCTTGG TTGATAATCC CAGTTAAGCC 000880 000881 CAACATTCGA ATCATCCTAG CCCAGGTACC AGACATGTCA GTGAAGAAGA CTTCATCCGC AGACATTTGA GACATCCCCA 000960 000961 ACTGCTTAAA CCTTTCCAGT GGCATCGCCC AGACATTGTG AAGCAGAGAC TTGCTATCCT CACTGCGCTT TGTCGGAATT 001040 001041 CTTGACCCAT AGAATCCTTA GGGCCAGAAA AGCAAATTAA ACTGGAATGT TATGGAGACC ACTATCCCTG CCTCCTTTCC 001120 001121 TTTTTTAAAG GTGGCACTAA TTTCTGTAAT TCTTTCCAAG ATGTGGCTTT CCTTCTGATA TACCATCATG GCTGGAAGAG 001200 001201 AAGACATGGG TGATGAGTGC TCAGCGAATG GGGGCTGTTA CCATCTACAC TGCTACTACA GGTCCTTCGG TTGACATGAA 001280 001281 CATGCCAGAA TGAGGGATGG GAGGACCAAG AGCTCATTTG GCCTGGGTGT GTCTGTCCTT AATTACACTG TTCTCAAACA 001360 001361 TATGTTCCAG CCAGAGGCTT GTTAAGAAGA AGCCTTTGTT TAAATTTCAG GGCCCACAGA GCATTTTATA TGATCTGAGT 001440 001441 GAGATGAGCC CTTGTGTTTT ATCAAAGGAC ATTCTGGGAA CATAAACCTG TTTGTCTTCA TGACAAGCCA TGCAACTCCT 001520 001521 GGGCAGAGTT CAGTTCTCTG TGAAGAGAAG TGAATATGCC ACTGGTACAC ATGCGTTTCA AACTTCCTGA TCCTCACGCA 001600 001601 AGACTGATTT CACAGGCTCC TTGACATCTG CATTTAACTC CTAAATGTCC TCTGCTGTGC ACCTCTTTCG CTTTTCTCAA 001680 001681 TCTCACTGCC CTCACTGCTA TTTGCTATGA CATTTTCTTT TTGCTTTTCG AATCTCATAC TAATTACTGC TTCCTGACCC 001760 001761 TTTTTGGCAC CAGTGTAGCA GAGGGTACTA CCCTCAGCTT CAGATAAGTC AGTGGAGTTC AGATTTGTCC ATCCTCTGCT 001840 001841 GATAGATGTA GGAATGGCTT CCAGAAATCT CTCTGCAGAG GGAGTGAGGG GAGCCTCCTG GGAGAGCTTC AGCTTAGACC 001920 001921 CATAAGTCAT TACAAGAAAC TCAGCTCAGG AACAAAGCCT TAGTCCCTAC AGGAGAAAGG CAATCCTAAG GAGAGCGGCG 002000 002001 CCTGAACCCT TTCCTACCAT CAAGAACTCA AGAACTCAGG TCTGTAATTT ACAAAGGCAT GGGGTGACCA GTGTCGCAGA 002080 002081 CACTGGCTAG ATGCTCCCCA AACTTGTCTC CTTTTCTTCC TGGGCTCATA CCTTCCTGGC ACACATACTC TCTGTCTGAA 002160 002161 TTCTAGCCTA ATAAATGTGG GCAGAATTCA CATACACCAG CTCCAGGCCT GGCCCATAAC ACTTCCTGCA TGATCTGGGA 002240 002241 TGCAAACGAT CCAGTGGAGG CCTCCGAGGC CCTAAGGATG AAGCAGCTGG AGACAGAAGG GCCTGGGTCC CTGAATGGCT 002320 002321 GGGAGGAATA GAGCCCCAGT GCAGTCTACT TGCACCCCCA CCTTGACTCT GACATAGGCA GAAATAAATT TTTACACTCT 002400 |
Predicted Small Protein
Name | NONHSAT027029_smProtein_287:442 |
Length | 52 |
Molecular weight | 6044.091 |
Aromaticity | 0.196078431373 |
Instability index | 56.2098039216 |
Isoelectric point | 5.34735107422 |
Runs | 8 |
Runs residual | 0.00262085032033 |
Runs probability | 0.0383324500973 |
Amino acid sequence | MPLTLVKCLCHFFLRCTILSDCSLSEFFESLLNLLYLWHSFAYFEVQGFNC |
Secondary structure | LLHHHHHHHHHHHHHLEELLLLLHHHHHHHHHHHHHHHHHHHHHEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooo |