NONHSAT027206
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027206 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
8981 nt |
Genomic location |
chr12+:19686271..19766379 |
Exon number |
19 |
Exons |
19686271..19686837,19690488..19690620,19692569..19693621,19694909..19695147,19697427..19698194,19699377..19699798,19705361..19706133,19706144..19706764,19712377..19712485,19713096..19713259,19727108..19727556,19728532..19729201,19734776..19735672,19737914..19738593,19741381..19742135,19748742..19748933,19765862..19765890,19765898..19765922,19765942..19766379 |
Genome context |
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Sequence |
000001 TCACTAGTGT GAATGAGAGT TAAGCAGATA CAAGGATCAG GGATGTATTC TCAGACTGTA TGTTATGCAA TTTATATCAG 000080
000081 CTTAGATTAA GCATTCTCAG GCAAAATTAA AGTACAGTAT TTCTGTTTTT ATGATTAATT GTTTTCCACT CTGTTTAAAA 000160 000161 TGCAGGAACT CGAAGAAGAA GGAGGAATCA AATGAGGAAA AAGGAGAAAT CAGTTATCTT AGGCAGTTTG AGCTGCTAAC 000240 000241 AAAGTAGCAT AGACTGGGTG GCTTATAAAC AACAGAAATG TATTTTCAGT TCTGTAGATT GAAACTCTGA GATCAGGGTG 000320 000321 TCAGTATACC CAGGTTCCGG AGAATGTCCT CTTTCAGGCT GTCTTGAGAC TGCTGTCTTC TTGTAGTCTC ACATTCTAAA 000400 000401 AAGCTTATGG GAGGAGAGCT CTCTGGGGGT GTCTTTCATG ACACTAATCC TATTCATGAG GGCTTTACCC TCATGATGCC 000480 000481 TCCCAAAGGC CCCAGGAGGG CCTTACTATC TTATTACTAT TACATTGTGG GTTAGGATTT CAACATGGCT TTTGGGGAAC 000560 000561 TCAAACAGGG CAACAGAGCA AGACTCTGTC TCAAAAAAAA AACAAAAGAA AAGAAATACA CTTACATAGA TGAATAATAA 000640 000641 AACCAGGCAC GGTGGTTCAT GCCTGTAATC TTAGCACTTT GGGAGGCTGA GGCAGGAGGA TGACCATGGC AAGAGGGAGA 000720 000721 GTGGCACAAA GCAAGGCTGG AAAGTTAGGT GCTAGATCAC GCAGGGCCTT AGAGGTCATA GGATTTCATC CCGAGACAGC 000800 000801 CATTGCAGGG CATTTAGTAT GGTAGGGCAT GATCAGATGT TAATTTATAA TGTTATGAGA ATAGATAGGA GAAAGTGTGT 000880 000881 GGATACAAGG AGGCCTGTGG GATGACCATT GCCATGGGCC AGGTGAGGGA AGATGTTAAC TTAGATTGGT AGAAGTAATG 000960 000961 ATGAGAAGAA ATGAGTGGAT TTGAGAAATA CTTGGGAAAT ATATCACTAG GATTAGGTGA GGTTTCTGGC TTGAGCAACT 001040 001041 GCATGACTTG GTCCCATTGT GTTGAGAAAG GGAAGCGAGC TCTGGAGGAC TAATCCCTAG GTTTGGCCTA CATTGATTGT 001120 001121 TTATAAACAG TGACCAAGAG ACAGACTAGT TGGAGGATTT TTTCCTTTGT CCCTTTGTTC TCTGCTTAAG GCAGAGAATC 001200 001201 TTAATCACCA ATCAGATATT ACCTGACCTG CTTTTCAGCT CTCTGACAAA GATGTGTGTG AATTACAGAG TGGATATTTT 001280 001281 TGTTTTTTTT TCACATTTTG TCCCATTTGT TTCTTCTTTC TCTCTGACTC AATTCCCCTC ATTATAAAAA ATTTTGATTG 001360 001361 ATACTTAATA ATTGTACATA TTTATGGGGT ACAGTGTGAT GTTTTGATAC ATGTATACAT TGTGTAAAGA ACAAATCAGG 001440 001441 GTAATTAGCA CATCCCTCAC CTTAAACATT TATTTCTTTG TGAACATTTG AATAGCTCTC TTCTAGCTGT TCTGAAATAT 001520 001521 ATCATGCATT ATTGTTAACT CTAGTTATTC TACTGTGCAT TAAAACTCCA GAACTTATTC TTTCTATCTT ACTGTAGCTT 001600 001601 TATACCAATT GACTAACCTT CCCCCTGCCT CCCTATCTTC TGGTAACCAC TATTCTACTC TGTACTTCTG TGAGAACAAC 001680 001681 TTTTAAGATT CCACACATGA GTGAGATCAT ACAGTATTTG CCTTTCTGTG CCTGGCTTAT TTCACTTAAT GTATCAGTAG 001760 001761 AGAAGGGTTT CACCATGTTG CCCAGGCTGG TCTTGAACTC CTGACCGCAA GCCATCCGCC CACCTTGGCC TCCCAACGTT 001840 001841 CTGGGATTAC AAGCATGAGC CACTGCCTCT GGCCTATAGC TGTTTACAAA ATGAGGACCC AATCAAGGAG CAAGTGGTAT 001920 001921 ATTTATTTAT TGTATCTCTT TAAATCTCTT TTAATTTATC TAGGACAGTT CCTTAAACTA ATTATGTGTC TTAAGACAAA 002000 002001 GCTGGAGATA GGTGTGACCT GGCCCTTGTT CATAAGCCTG GGATGTGATT TGATTCTTAA CTCATTGCAT GTGGAAAGTT 002080 002081 CATTGATGAG GTAATTGGAG CTCAACTCCT GATCACTTGA GCAAAGATAA TAACACTGTT GAGAATCTGT TATTAGTTGC 002160 002161 TGTGGTGAGA AAAACCAATT GTATCTAACT GGTGTTTAGG TTTTACTAGG GTAGAATATA TTTTGGTGTA TCTTGAGTAT 002240 002241 CTAAAGAACT GGTCTATTTC TGGTTAATGG GATAATCTAG GAATTTAGTC AAAGTATGCT CAGCATGGTC TGGGAGCTTA 002320 002321 TTAGAAATGC AGAATCTCAG ACCCCACCTC AGACTTATTG ACCCCAGAAT ATGCATTTTG TTTGTTTGTT TTTGGTTTTA 002400 002401 GACAGGGCCT CACTCTGTTG CCTAGGCTGG AGTGCAGTGG CACGATCATA GCTTACTTCA GCCTCAATCT CCCAGGCTCA 002480 002481 AGCGATACTC CCACCTCAGC CTCCTGAATA GCGGGGACTA CAGGTGTGCT CTACTGTGGC CAGTGAGTTT TTTAAAAAGT 002560 002561 TTTTAGTAGA GATGAGATCT TCCTATGTTG TCCAGGCGAA TTCCTGGTCT CAAGTGCTCC TCCCACCTTG CCCGCGAATG 002640 002641 TGCATTTTAA CAAGATTTCC AAGCGATTAA TGTGTCCCTT AAAGTTTGAG AGGCACTGCT TTAGTATATT GATTTTGTCA 002720 002721 CAGGCATTGA GGGTCCCTAA GGAGAACTGT TGGTAAATAT GAAGATTGTT TTCTTATTAG CCTTATTAGC AAAAAGAAAA 002800 002801 AAAAAGAAAG AATAGAAAAA ACCCTTACAA AATATTGGCC AGTTCAGGTG AAGCAATAAA GATGTTTGAG GGAAAATGAT 002880 002881 TCTAATCGTT TTAAAGCTAA AGCTGAGGAA TTGGGCTATC TAAATGTAGC TTTAGGATTG CCATCGGTTG CACGAGCTTG 002960 002961 CTTTCTGTTT GTGAAGGAGA ACTTGCCTGT TGAAGAAATG CGGCACACAA GCTGTAATAT AACAGGAAAG GAAGGCTTTT 003040 003041 TGTGCCAAGA AATCACTCAC GTGAGCTGGG ATCCTTTTAA CAAATCTGGT GGCAAGCTCT TTCTGAAAGC TTGAATGAAG 003120 003121 AAGGAGATAA TCTAAAATTG TGTTCATGGC AACCACCCTC AGCCTTTCAT ATGGAGTTTG CTTTAAATTT TGTTCATATA 003200 003201 AAATTTTTTC GATAACTCTA AGTAGTTCAA TTAGGCAGGA ACATCTGAGT TACTTACTTT TGAACTTACT GTGTTTTGTT 003280 003281 TGAAAATCAT GTAATTTGGG AGGACTCTGG AACTGTTGTG TAAGATTTCA CTGCATGAAA TACAAGTTGA GCAGTTTTAG 003360 003361 TCACACTAAA AATGAAACTG GGTGACAGAT CATTCCCACT GTACTTTCTT ACCTTCAAAA GATTTTCTGT GAAACTTAGA 003440 003441 GGCACTTGCT CTCTTATCAT ATGCTGTGTT AGAGCGGTGT GGTTGGCCAG TAATTGAGTA ACAATGCCAG ATTGGCATTT 003520 003521 TTCATCAGGA GGTGCAGTCT TGTTTTATTT ATCATCATAT TTCCTCATTA AGTTTAATTT TCTTTTTCTT TTCTTTCTTT 003600 003601 TTTTGAGATG GAGTTTCACT CTTGTTGCCC AGGCTGGTGT GCAATGGCGC GATCTTGGCT CACCGCAACC TCCGCTTCCC 003680 003681 GGGTTCAAGC GATTCTTCTG CCTCAGCTTC CTGAGTAGCT GGGATTAAAG ACACCCGCCA CCACGCCCAG CTAATTTTGT 003760 003761 ATTTTAAGTA GAGACGGGGT TTCACCATAT TGACCAGGCT GGTCTCAAAC TCCCGACCTC AGGTGATCTG CCCACCTCGG 003840 003841 CCTCCCAAAG TGCTGAGATT ACAGGCGTGA GCCACCGTGC CCAGCCAAGT TTAATTTTTA CACCAATGAT TCATTTCTGC 003920 003921 TTTTACAGGT GATTACTTTA TCTCACTAGA AAAAAAATCT AAACAAAAAG TGTCCAAAAC TTACAATAAG CCTTAATCTC 004000 004001 GAATAATTAC CATGACATGT GTTACTTGTG TGCTTATTGC TGTACAGCCT TCTTTGGCTT CTGACAAGAG CAACTGCTGA 004080 004081 GCAGAAGCAC TTCAGCCTCG TCTGGCATTT GATGAATTTG ATTAATGTGT GCTATGGTAA GTCTATTCCC CTGTATAATT 004160 004161 TTATGGGAGA GGCCATGTGC AAGTCTGAAT TTAAAAAAAA GAAAAGAAAA AGCCTTGTGC AGAATTATTA CCTACTCAAT 004240 004241 ACATTATATA TATGCCAGAG ATGGCTAAAG CAGCTATATG TCAAGGTCTG CAAAAACATG AAGAAGCTGG CATGGAAATT 004320 004321 AACACGTTGG TGGTCTGCAA TGTGTTCAAA GTTGGTGTTT TTAATGACAC TTAAAAATAG TTAAAATATG TAATGGCTGA 004400 004401 TTTCTGACCA GACTAAACTC TCAGCCTGTC TAATGTTAGG CAGCTTGATC TAATCAATCT CATCCTTTTC TTTTCCTCAG 004480 004481 TCCAATCTTG CAATTGCTAT GTCAGTTTCA GTTCACAATA ATACCAGTGC AGACATGGCT CCTTAAGATT TTCTCCTTTT 004560 004561 CCCTCACGCG GGTCGGAAAA GAAAGTATGC TGGATAGCAA TGGAGAGCTA ATGAGGCAGT AAAGGAATTA TGGGACCAAG 004640 004641 ATTCAGGAAA AGGAAATTCA AAGAGCTGAA CCCAACATTG CAACTAGAAA TAAAAAAATA ACCGAAATTA AGAACTTAAT 004720 004721 CGATGGATTT AGTAACAAAT TAATTATAGC TGAAGAGGAA ATTAGTAAAT TATAAGGTAA GTCAGAAACA ATTACCCAGA 004800 004801 ATTATGTACA GAAGGAATAA AAGATGGAAA AATGTGTATG AACAAAACTG GCAGCTTTTC CACGAAGCGC TGCTGTGCTG 004880 004881 GAGGCCTGTC TTAGTTCCTA ATCACAGCTT CCCTCAGGAA CCTGGGGGGC AACAGGAGAG AGGATGGCAG AGCAGCAAAA 004960 004961 ATGGTGGCCT GCCTGCATCC TCTAGGAGCC GTGGCCCAGG GAAGTGGAGA GTTGCCCCCC ACCTAAGAGT TAGGCGGGGC 005040 005041 TGGCTGCGCT AGGGTCCCAG GCCAGTGGGT CTTGTCCAGT GAGGTGCAGT GGTGCGAGGC TCAAACTCCT GGGCTCACAC 005120 005121 AATTCTCCTG CCTCGGCCTA AGTGCTGGGA TTACAGGCAT TAGCCACTGC GCACTCTACC TTTTTTTTTT TTTTTCTTAT 005200 005201 TTTTTCTTCC AAACAGGATT TTGAGAGCCA AAAGAAAGGA ACTGAAAGAA TCTAGGCACA TTATACTATA GCTATATAAT 005280 005281 TAGCAAGAAA CTTGAGGAAC ATATCTCTCT TTGTCACAGT TCCAGAAGAA TTCCCAGGAA TTTAGCTTTC CCTTTACTCT 005360 005361 AATCTCAGAA GGAGCTATAC CCTCTTTGAA GCTCCATAGA GAGAAATAGG AACAAACTTA CCCAAAACAC ACGGTGGGTA 005440 005441 TGAGTGCTGA TTTTTATCCC CATGGAGAAA GGGAATTTTA CAGCAATGAG CATAGGGTCT CTGGTGAAAG GTCATATCCA 005520 005521 TACATATCTT TATAGAAAAA AAAAAAGAAG GCTTGGAAAT AGTGAGAACA AAGCCCAGAG CCCAGGGCTT GGTGGGAAAG 005600 005601 CAGGCCCTGG CTCCCCTTCC TGCATGTGAG TTTTGACTTC TTCCTGTGCT GGTCAGGGCT GCAAATGGCT GATAATATCA 005680 005681 CTGAAGCCTG GACTATCTTC AAAGCCCGAC TGGCACAAAA TGACATATTA ATGTAGTATC TCATTTCCTT TGCATTCTGG 005760 005761 GGACAAGTGG GATTGGCTCG ATGCCCAGGG ATATCCTGTG AACTCATGGA ATAGGACTGG GCTAAGCCTG GCTAGCACCT 005840 005841 GACAGATCCT GTCTATGGAA CTAGGGACAT TTTTTCTCAC TGCTTGAATT GGTTGGAACA TAAAACTAAG ATGGCATTTG 005920 005921 ATCTGTCTTG CAAAGATTTG GTTCAGAAAA ATCTTACAAA TATGCTTTTG ACCGGTAGGT TTCATATTAA AGGGCATGGC 006000 006001 CAGCGAGACT GCTGCTAAGC TGGGGGATCC CTAAGTTCCA GAAGAGATTT GTTGAGGGGC AACAACATTG ACATTGTCTA 006080 006081 TTCTGGTTCT TCCCAGATGG TTCAGTCTTA TTTCACTGGA GATAAGTCAG TCTTTCTCCT GGTGGTGGAG GTGTGGGGGT 006160 006161 TGTGTGACTG CTAAACGTTC TGGTCAAGGA GGTAGGGACA AAGAGAAAAC CAACGTATGC ACTGTCAGCC AATTCCAGCG 006240 006241 TCCAGCCCTG TCTCTTTCTC TCACCCTCCA TGGTAATCAG TGTTTCTGAG TTTGTAGACC TTCTGGGGGC TCTGCTGGGC 006320 006321 AGACCTTCCA TCCTTATCCT TAGCCCTCTG ATGTGGTTTG TCTCTGTGTT CCCACCCAAA TCTCATCTTG AATTGTAATC 006400 006401 CTCGTGTGTC AGGGGAGGGA CCTAGTGGGA GGTGATTGGA TAATGGGGGC GGTCTTCCCC ATGCTGTTCT CATGATGGTG 006480 006481 AGTTCTCACC AGATCTGATG GTTTAAAAAT GTGTGTCAGT TTCCTCCCTC TCTGTCTCTC TTGCTGCCTT GTGAAGAAGG 006560 006561 TGCTTGCTTC TCCTTTGTCT TCCATAATGA TTGTAAATTT CCTGAGGCTT CCCTAGTTAT GCAGAACTGT GAGTCAATTA 006640 006641 AACCTCTTTT CTTAAAAAAT TATGCAGCCT CAGGTAGTTC TTTATAGCAG TGTAAAAACA GACTAATACA GAAAATTGGT 006720 006721 ACGAGGAATG GGATACTGCT ATAAAGACAC CTGAAAATGT GGAAGCAACT TTGGAACTGG GTAACGGACA GATGTTGGAA 006800 006801 GAGTTCGAAG GCCTCAGAAG AGGACAGGAA GATGTAGGAA AGTTTGGAAC TTCCTAGAAA CTTCTAACCT CCAAATTTTG 006880 006881 TTGAGATTCT CTGCTGATGT GTTTCCTTTG TTTCCTGTTC TCTCTATCAC TTAGAGTTTG TTGTATTTAA TACCTTTGCT 006960 006961 ATCATTTTAT TGTGGTTTTG GTTGGGAGAG GAAATAAAAT GGCCAATCCA CTACCTCGAA AATAAATTAG TACATTTATT 007040 007041 TGCCTATCTT CATCTCCTAA CTAGTCTGTG AGCTCCTTAA GGGTAGGGAA GGTTATTATT CATTTTTATA TACCCAAAGT 007120 007121 ACATCAGTCA CAGCCCAGCC AGAAAAATAG AAACCACAAG AAAGATTTCA CCAGAGGGAA TTTACTAGAG GAATTAGTTT 007200 007201 ACACATGTAT TAGAGGATAG AAAGGACAAA AGGGAGCACT GGGCTCACCT GGAGATATTA CTGAGGAAGC TGCTACCAAC 007280 007281 CTAGCCCTGG GGGAACCAAA CAGGGGAAAC TGGGATTGTC AAAAGCTCTA GAACCTCAGA GTAGGGGACC TATGTAGTGG 007360 007361 GAGCTCAGGC CACTGAGGGG TGTTTATGAC CAGGTTGTAG TTGGACCTCT AGGGCCCAGT GTTGATGTCG TAGGGATCTC 007440 007441 TGAGGGCCAG TGATGAGGCT AGATGTGAGT TGCCAAAAAT GTTCAAGCAG AAGCCAGCTG TTGCAGCTGG GGCTAAGTGC 007520 007521 CACTGACAGG AACACTAAGC AAAAAGTTAT TTTCATTTCC TGAGCTGGGA AATTTACCTT TTCCAGCAAG ACAGAAGATT 007600 007601 GATGAGAAAG AGATTATACA TCTATTCAGA ATTATCTGGC ACAGTGCTAT AAGTATTTGA AGATGATGGT GATAGGAAGA 007680 007681 ATAAGAAAAT AAAATAGCTG TTTTATTGTG ATGTGAATAA AAATATTGCC ATCAAAGCTT ACTCAATAAT GCTTTGAGTT 007760 007761 TAGATACATT ATAAAAAGTC AAAAAACCAG GAAAAGCATT TTACGGTATA AATACCTCAT AGAATTAATA AAGGAAGCCC 007840 007841 TGTATAATTT AAAAACAAAA TCAAAAGGAA TCCCTGAACT TCAGTTTACA GACAGGCTAT AACAGATTGC ATGATGTGTA 007920 007921 CACGTCTGTA TGATTGGGTA GGATAGACTT CGCACAGAAT CTCCTGGCCA AGGGGGGCTG AGCCCTGGTG GGGCTCACTT 008000 008001 AGCCAGGAGG ACGGAGGGCC GTTTTCCAAT TTGTTTTCTT AGAGGAAATA ACTTTTTATA ATCCAACCCT GTCAAAGGGG 008080 008081 GCGCTTTTCC TAATTCATTA AAAGTCTTGC ACTAAGTTGG TAGTATAAAT ATTAATAAAG ACCAAGAAGA GTCCTTGGAT 008160 008161 AGCTGTAGTA GAACATTGGT CTAGAAATAC GTAGGCGCAA TTTTAAGTCC TTCCTGCGTC ACTAACCATG AATGTGGTCT 008240 008241 TAGCGTCTCT TAGTCTCATT TCCTCATTTG CAAAATTAGT TGGATTACCT CACAATGTTT TTTTTTTTTT TTTGAGACAA 008320 008321 GGTCTTGCTC TTTTACCCAG CCTGGAGTGC AGTGGCACTA TCATAGCTCA CTGCAGCCTC AAACTCCTGG GCTCAAGTTA 008400 008401 TCCTTGCATC TCAGCATCTC CAGTAGCTGG GACTACATGC ATGCACCACC TTGCCCAGCT AATTTTTTAA AAATTTTCTT 008480 008481 CCCTAGAGAC TAAGGGAGGA GAGTGGACAG CTAGCTGAAC TGAGGATTGA GAGGCTCTCT GGGCTACCTT GGAACTCTTA 008560 008561 GTCTTCCCTT CCTGAATGTG TCTTACCTGA ACTTTGAATT TCTTTAAATT TTACTGCAGA ACATATTGTT TGCGTTTCAC 008640 008641 ATTTGTTTCC ATGTTGCCAT ATAATTGCTC CCTAGCTCTG TTGAAAACAT ATTTTTGTTT TGGACGTGCA CGCATGCACT 008720 008721 TGTCTCAAAC CAAACAACTA ACGCAGGAGT GGAGATAGAG ATGATCTCTT GGACTTCGGT GTCTAGTGCA GTAGTAGTTA 008800 008801 GAGGTCAGAG TTCAGAATAA ATGACTTTTG TGTCCTGTCT GGGAATAGAA TTTGACAACG TAGTGAGTAA TTTAGGAAGT 008880 008881 GGCAAAGTTG TGTTTCTGTC TCTAAGTCCA GTATTCACTT TCATACCCAA GAAGCTGTCT GTTTTGTTTT GTTCACAGGA 008960 008961 AGGAAATAAA AGGATCAGGG C |
Predicted Small Protein
Name | NONHSAT027206_smProtein_3503:3727 |
Length | 75 |
Molecular weight | 8727.0744 |
Aromaticity | 0.27027027027 |
Instability index | 57.8068918919 |
Isoelectric point | 9.10028076172 |
Runs | 10 |
Runs residual | 0.00751483190508 |
Runs probability | 0.0224783607137 |
Amino acid sequence | MPDWHFSSGGAVLFYLSSYFLIKFNFLFLFFLFLRWSFTLVAQAGVQWRDLGSPQPPLPG FKRFFCLSFLSSWD |
Secondary structure | LLLLEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLEEELLLLLLLLLLL LLEEEEHHHHHLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiii |