NONHSAT027240
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027240 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
558 nt |
Genomic location |
chr12+:21220285..21228718 |
Exon number |
2 |
Exons |
21220285..21220317,21228194..21228718 |
Genome context |
|
Sequence |
000001 TCGGCTTCCA TTCAATGATT ATGCGATCGC TAGGTGCTCC TGAGTTTTTG AAATCTGCAA ATTTCTCACC CATTTTGTCA 000080
000081 GCACTAGATT GCTTCAGATA CATTGGCCTC AGACACCATT CCCTTGTCAT TCTAATATTT CTTACTGTCA GAAATTGAGA 000160 000161 ATGATTAAAA ATAAGCAGAA TCAGTAAAGT GCCATATATA AATCACTGTC ATGTTTTGTG ACAAAATCTG AAAAGTATGA 000240 000241 GTCACAAAAA AGAACAAGAA CAAACTAAAA TCTTGTATGC TTCAGTTCTA ACATCTGAAG GATAGCTCTC TACTACGATG 000320 000321 TCCTTCAAAA TTTTGACCAA ATTACCTATG CTTAAAACTA GGAGTTAATC TCAGAATGTA TACTTCTCCT ATAAACAatg 000400 000401 tatgtattcc tggaatgctg taccttccgt gaaaccatgc actacagata aaaattgact tagggacaga ccactgaaat 000480 000481 gtatgcaccg ttgtgataag accactaaca gaaacaaAAT TTAGCAGCGA ACCTGACCTG TACAGCCTAG GCTGCTTT |
Predicted Small Protein
Name | NONHSAT027240_smProtein_14:157 |
Length | 48 |
Molecular weight | 5362.3868 |
Aromaticity | 0.106382978723 |
Instability index | 45.2787234043 |
Isoelectric point | 10.0366821289 |
Runs | 9 |
Runs residual | 0.0252127659574 |
Runs probability | 0.0489214704901 |
Amino acid sequence | MIMRSLGAPEFLKSANFSPILSALDCFRYIGLRHHSLVILIFLTVRN |
Secondary structure | LLLLLLLLHHHHHHLLLLHHHLHHHHHHHHLLLLLLLEEEEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiii |