NONHSAT027366
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027366 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5553 nt |
Genomic location |
chr12-:26097777..26111496 |
Exon number |
4 |
Exons |
26097777..26099068,26105691..26109280,26109572..26109697,26110952..26111496 |
Genome context |
|
Sequence |
000001 ctcggccggg cgcTCGGGTT TCAGCCGCCG CTCCTccgcg ccccgcccgc gcctggcccg ctcgccggcg ccgggAGAGA 000080
000081 CCTCGTAACG GAACTGGGAC GCCAGCGCTG CATTGTGGGA GCTTTTAAAG CGGCGGGGAG CTCGGCGCGA CCCTCGGGCC 000160 000161 CACCGGGCCA CGCTCGCCCG GCCCGCGACG CCCCCCCGCT GTCGCCTGGC CCGCGACGCA CCGAGGCCTG AGGACCCGAA 000240 000241 AGCCGGGCGC GGGGAGATGA CCGGTGGCTC GTGACGGTCC CACGGGCAAA ATCTTCCATC GCCCGGGGCT GAGACTTGTC 000320 000321 AAACTGCCCT CTACGGTCAC CCGGAAAGTA GGAGGCTTTT TCTGCAGAGG GGAAAAAAAT CAAAAAGAGC CGTTCCATCC 000400 000401 CCCCTCCAAG GACTGGGTTT GAATTGCTTT TCATCTGCAG TGGCTGTGAT TCAGCGTCCC TCTTAGCAGC AGGCAATGAC 000480 000481 AGAGGCAGGA GAGGGgaaaa aaaaaaagaa agaaagaaaa aaCACAGCAA ATGAATCAAA CGGACCAGGT AGCAGGCAAG 000560 000561 AGTGTGGTTA TCGTTGGACC AGGATTCAGG ATCTGACTGA GTAGCTGACT CTTAATCCAG TTTGTGTTGA TCACCAGGAG 000640 000641 GATCTGGACC TCAGTATTAC CACATCTAGA GCTATAATCA CATCCCTGTT AAGCCTTCCT GAGATCACAC CAAATGTCCT 000720 000721 TGATGGGAAT TGTAAACAAC CCTTACTTCT GGTTTCTAAT GATATTCCAG GAAAGGAGCC TAACTAGAGT CAGTGAGTAT 000800 000801 TCATGCACTT CAAACCCTGT GACATAATAA GATTTGATTT TTAAGAAAAC AACTTGAGAG GATGGATTCA GAAAAGAGGC 000880 000881 AGATCCAAGG GAGAGTCTAA ACTGGAGAGC AGTGGCAATG AACAGGAGGA GGCCATATCG AGAGATGaat tgatcatctt 000960 000961 atagacctgg aggtcagaaa tctaaaatca aagtgtgggc tgtgttcctt ctggaggatc gaggggagaa tccatttcct 001040 001041 tgcccttttc agcctctaga tgccacctgc attccttggc ttatagtccc tttctctatg tttaaggcca actgcatagc 001120 001121 atcttccccc atttctttgt aacttctgct tcatggtgat ggggacatct ctctctctga TCGTAGGAAT TGATTTAGAT 001200 001201 GCTTTTCTAG CCATATGTAT TATGAACTAA ATGCAGTTGA ATTACTTATG GGAGGAAATG GCAGGTGACC TCATTACTTG 001280 001281 TCAAATCATC GTTAGATAAC TGACTTGACT GTTAAGATTG CTGAAGCAGT GATTTATTAC CTCAGCTAAA TCTGTATCAA 001360 001361 TCTGGTGACC CGTGTAACTG AAACCAAGAT GTTAACACTG TAAGAAAACC TAGCTTATGT TTGCAGCTCC TGAGAATAAA 001440 001441 TCCCTTTATC TTGAAATACC TGGAAATCCC TTTTTAATGT CCAGTGGAGT CATATTGCCA AGTTTGAGAA ATGTGTCTAG 001520 001521 ACCAGTATTT CCCAAACAGC CCACCAGACA ACACCAGCCT GTAAGATGGt gatattgttt ggatgttttt tccctccaaa 001600 001601 tttcgtgttg aaatgtgacc gccatgttgg agttggacct agtggaaggt atttgggtga tggggaatct cttgtgtggc 001680 001681 tatgtacctt ccctgcagta atgagttcat gaaagatctg gatgtttaaa agagtctgtg atcttcctcc tctctctctt 001760 001761 gctcctgttc ttgccaggtg atatgccaac tccacctttg ccttccacca tgtttggaag ctccctgagg cctcaccagg 001840 001841 agcagatgct cgtcccatgc ttcctataag cctgcagaac tgtgagccat aataaactgt gaattataaa ttgcctttat 001920 001921 agcaatgcaa atggaccagt acaGATGGGA TGCTGGGAAG ACAGTTGTTT CCACCTTCAG TAAAGTCCGT GGAACACAGT 002000 002001 TGTGACTATA TTCTAGGCCA GCCAAGATGC TTGTACTCAG AAAGGAGTGG TCTCAGGACC ATAAGAAAGT GAAAAAATAA 002080 002081 AAATAAGAAA ATAAAGAAGG GATTGTCAAT GAATCAGAAT TCATCAAGGT CAAAGTCTTA GGAAATTCCT TCATGAGGAA 002160 002161 GTCTAGGGGG GCTATGGAAA TGAAATTTTT AAACAAATAG GTATGTGGTG CTGGCAGGAA TAAATTATGG ACTTATGAAT 002240 002241 ATAACATAAG ATTCTTTATT ACCTGGTCTC ACCCGTCTTT CCACCTCTGC CCCCCTTCTT GCCCGACTCT GTGTATCACC 002320 002321 CATAATAAAC TACTTACAGC TTCCTAGTGt taaatttacc ctaaagctgc ctccttcaat attttaagtt taacctaaag 002400 002401 gttcttcata catagtgaac tataacccaa tgattaaaca gattgtaacc tactcttgta ccagtcacca agtttcagcc 002480 002481 aatcagaggt ggccaactgt tcaaaccatg ctcaaataag ggaaatgtca tggtgtaact aatccagctg tttctatacc 002560 002561 ttacttctgt tttcttaggt cactttcctt ttttgtccat aaattctctc caaccactca gcagcactgg agtcactcca 002640 002641 aagctatcct ggttcagggg tctgtctgat tcacaagtca ttctttgttc aattgagctc tgctaaattt aatttgtctg 002720 002721 aagtttttct tttaacagat ggtgtcagaa atggacccca aagtagagct cccagtgatc ccccaggagc actgagtgac 002800 002801 cacaaggggt acctgctggg cccgtcctct cgcagtgtcc actgctctct tacagcaact ggagattgtg gctgcattct 002880 002881 ctctcagatt ctgaagctcc atacattgcc gttttcagct gttcaagctt gcttgagcaa atttttgatc ttagctgagt 002960 002961 ttggaagtcg atagacattg gactgggtcc aggatttgat tggatctgat aattaactgg cttggatcca gttagatgcc 003040 003041 tcggttatct gactgggtca gatagaaacc gccagtaaat attttaataa caatactgca ggggtatgaa ctctggcttt 003120 003121 aagaaactca caaggaattt tatgttctat accctttgtt tctttttctt gtgtgcttcg gtcaggaaaa atcattagtc 003200 003201 aagttaatca aggggatctg agagccaaat acaagattca acgtaaaaat ggaatccttg ggctaggcgt ggtggctcag 003280 003281 gcctgtaatc ccaggacttt gggaggctga ggcaggcgga tcacctgacc ttaggagttc gagaccagtc tggccaacat 003360 003361 ggtgaaaccc cgtctccact aaaaatacaa aaattagcca ggcgtggtgg tgggcacctg taatcccagc tactttggag 003440 003441 gctgaggcag gataatcact tgaacccagg aggcagaggt tgcagtgatc tgagattgca ccactgcact ccagcctggg 003520 003521 caaaagagcg agactccatc tcataaataa atacataaat aaataaagaa atccttaatt tctgcggaac tgagtgctct 003600 003601 accttctggc tacacctacg tatacctgta tgaggtatag gccctggaag cagcaaacac ttacagaaat ggtgaaatct 003680 003681 tactaaaggt aatctaaagt tatggtggaa catcccaaat gaacaacact gcactttagg aagtacatat aaaaatgaag 003760 003761 tctcccaatt tagtattatt cagggatggc tgttgaagtt cagaagcttc taaaaagatt ccaataattt tacagattct 003840 003841 tttaaaagat tctttgtaaa aggcaaataa aaagcttaag tgactaatca gaaaaattag gtcttctaac cttttgtcat 003920 003921 tgttactgtc ttgccctgaa agggaaaaga aagctggata aagtatttat agaagataga ggacctgtgg tggctcatgc 004000 004001 ctgtaatcca aggtggaagg attgcttgag gccagaagtt caagaccagt ccaagcaaca tagcaaggcc ccatctctac 004080 004081 aaaaaatgaa aataaaatta gccgagcgtg atggctcatg cctgtagttc tagcttctag agaggctgag gcaggaggat 004160 004161 tgcttgagtc caggagttca agattacagt gagctatggt cacaccactg cactccagcc tgggtgatgg agtgagactg 004240 004241 tctcaataaa aagacaaaaa ggtcaaggaa gcttttcctg atccactaac taaggacaat caaacccttc atgatctaga 004320 004321 atctggagac tgtgtcttct gggaatagta tcagagaaag actgccctta ctgcccacat gtagcaaaac tttgagacgt 004400 004401 tgaattatgg gtccataatc tcacaactca gaggggcacc tctagactct tggaactgta tatctattgg agactttaag 004480 004481 gtaaagctga acagagagac gtttttctcc agaagcagac agcaccatag tcatggacag ctttcccaag atcacagatc 004560 004561 aagacttctc tgccgtcatg agactcataa cctcttaatt ttttcttgct tatgcttctg tgaacaatag aattggaaaa 004640 004641 ggggtggtcc cgcgtgcacc catagggtat acttttattt gtggaggatt ttgctgccaa ccttatacat gggcaaactt 004720 004721 atgccttcat ggatggaaga taaagggcta atatgggtta gaaattttaa tggtaccttt gtttctccat aatcattcag 004800 004801 aaacagaaca ctggtccact cttgttaacc tacatcatag gttgaagaga acattgccag gaggccttca tccttccaga 004880 004881 tgggcaccat ttgttgggtc tttttccgtg gtatgaagaa aatgaagcaa tgattagaaa ttggtccctc ggccgggcac 004960 004961 aatggctcat gcctgtaatc ccatcacttt ggcaggccga ggcgggtgga tcacctgagg tcaggagttt gagaccagcc 005040 005041 tgaccaatgt ggtgaaacgc catctctact aaaaatacaa aaattagctg ggtgtgatgg tgcacacctg taatccagct 005120 005121 actcgggagg ctgagacagg agaattgctt gaacctggga ggcagaggtt gcagtgagcc aagatcaccc cactgcattc 005200 005201 caggttgggc aacagagcaa gactctgtct caaaaaaaaa agaagaaaga aagaaattga tccctcataa taggctgtat 005280 005281 agcagattct actgcaaagg ctatggttgc acaacagact tctttgaatt tgcttgctaa acttttactg gataatactg 005360 005361 ggattacagg tgtgagccac tgtgcccagc cTCTCCTGTT TAACTGTATT CATTCTAATG TTTACTTACT TCTTTAATTT 005440 005441 GTAAAATTGG GTCACTTAGA GTTTTTTTAG CCTATCTTGC CATTTAGCCA CTGTTACTGA TAATTTGGAT GGAAAAGAAA 005520 005521 AATAAATTAT ATCACCTCTC ATCTTCAGTG TAT |
Predicted Small Protein
Name | NONHSAT027366_smProtein_4769:4915 |
Length | 49 |
Molecular weight | 5526.2999 |
Aromaticity | 0.104166666667 |
Instability index | 58.68125 |
Isoelectric point | 10.7368774414 |
Runs | 7 |
Runs residual | 0.0197368421053 |
Runs probability | 0.0230903172079 |
Amino acid sequence | MVPLFLHNHSETEHWSTLVNLHHRLKRTLPGGLHPSRWAPFVGSFSVV |
Secondary structure | LLEEEELLLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLEEEEL |
PRMN | - |
PiMo | - |