NONHSAT027366

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT027366

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5553 nt

Genomic location

chr12-:26097777..26111496

Exon number

4

Exons

26097777..26099068,26105691..26109280,26109572..26109697,26110952..26111496

Genome context

Sequence
000001 ctcggccggg cgcTCGGGTT TCAGCCGCCG CTCCTccgcg ccccgcccgc gcctggcccg ctcgccggcg ccgggAGAGA 000080
000081 CCTCGTAACG GAACTGGGAC GCCAGCGCTG CATTGTGGGA GCTTTTAAAG CGGCGGGGAG CTCGGCGCGA CCCTCGGGCC 000160
000161 CACCGGGCCA CGCTCGCCCG GCCCGCGACG CCCCCCCGCT GTCGCCTGGC CCGCGACGCA CCGAGGCCTG AGGACCCGAA 000240
000241 AGCCGGGCGC GGGGAGATGA CCGGTGGCTC GTGACGGTCC CACGGGCAAA ATCTTCCATC GCCCGGGGCT GAGACTTGTC 000320
000321 AAACTGCCCT CTACGGTCAC CCGGAAAGTA GGAGGCTTTT TCTGCAGAGG GGAAAAAAAT CAAAAAGAGC CGTTCCATCC 000400
000401 CCCCTCCAAG GACTGGGTTT GAATTGCTTT TCATCTGCAG TGGCTGTGAT TCAGCGTCCC TCTTAGCAGC AGGCAATGAC 000480
000481 AGAGGCAGGA GAGGGgaaaa aaaaaaagaa agaaagaaaa aaCACAGCAA ATGAATCAAA CGGACCAGGT AGCAGGCAAG 000560
000561 AGTGTGGTTA TCGTTGGACC AGGATTCAGG ATCTGACTGA GTAGCTGACT CTTAATCCAG TTTGTGTTGA TCACCAGGAG 000640
000641 GATCTGGACC TCAGTATTAC CACATCTAGA GCTATAATCA CATCCCTGTT AAGCCTTCCT GAGATCACAC CAAATGTCCT 000720
000721 TGATGGGAAT TGTAAACAAC CCTTACTTCT GGTTTCTAAT GATATTCCAG GAAAGGAGCC TAACTAGAGT CAGTGAGTAT 000800
000801 TCATGCACTT CAAACCCTGT GACATAATAA GATTTGATTT TTAAGAAAAC AACTTGAGAG GATGGATTCA GAAAAGAGGC 000880
000881 AGATCCAAGG GAGAGTCTAA ACTGGAGAGC AGTGGCAATG AACAGGAGGA GGCCATATCG AGAGATGaat tgatcatctt 000960
000961 atagacctgg aggtcagaaa tctaaaatca aagtgtgggc tgtgttcctt ctggaggatc gaggggagaa tccatttcct 001040
001041 tgcccttttc agcctctaga tgccacctgc attccttggc ttatagtccc tttctctatg tttaaggcca actgcatagc 001120
001121 atcttccccc atttctttgt aacttctgct tcatggtgat ggggacatct ctctctctga TCGTAGGAAT TGATTTAGAT 001200
001201 GCTTTTCTAG CCATATGTAT TATGAACTAA ATGCAGTTGA ATTACTTATG GGAGGAAATG GCAGGTGACC TCATTACTTG 001280
001281 TCAAATCATC GTTAGATAAC TGACTTGACT GTTAAGATTG CTGAAGCAGT GATTTATTAC CTCAGCTAAA TCTGTATCAA 001360
001361 TCTGGTGACC CGTGTAACTG AAACCAAGAT GTTAACACTG TAAGAAAACC TAGCTTATGT TTGCAGCTCC TGAGAATAAA 001440
001441 TCCCTTTATC TTGAAATACC TGGAAATCCC TTTTTAATGT CCAGTGGAGT CATATTGCCA AGTTTGAGAA ATGTGTCTAG 001520
001521 ACCAGTATTT CCCAAACAGC CCACCAGACA ACACCAGCCT GTAAGATGGt gatattgttt ggatgttttt tccctccaaa 001600
001601 tttcgtgttg aaatgtgacc gccatgttgg agttggacct agtggaaggt atttgggtga tggggaatct cttgtgtggc 001680
001681 tatgtacctt ccctgcagta atgagttcat gaaagatctg gatgtttaaa agagtctgtg atcttcctcc tctctctctt 001760
001761 gctcctgttc ttgccaggtg atatgccaac tccacctttg ccttccacca tgtttggaag ctccctgagg cctcaccagg 001840
001841 agcagatgct cgtcccatgc ttcctataag cctgcagaac tgtgagccat aataaactgt gaattataaa ttgcctttat 001920
001921 agcaatgcaa atggaccagt acaGATGGGA TGCTGGGAAG ACAGTTGTTT CCACCTTCAG TAAAGTCCGT GGAACACAGT 002000
002001 TGTGACTATA TTCTAGGCCA GCCAAGATGC TTGTACTCAG AAAGGAGTGG TCTCAGGACC ATAAGAAAGT GAAAAAATAA 002080
002081 AAATAAGAAA ATAAAGAAGG GATTGTCAAT GAATCAGAAT TCATCAAGGT CAAAGTCTTA GGAAATTCCT TCATGAGGAA 002160
002161 GTCTAGGGGG GCTATGGAAA TGAAATTTTT AAACAAATAG GTATGTGGTG CTGGCAGGAA TAAATTATGG ACTTATGAAT 002240
002241 ATAACATAAG ATTCTTTATT ACCTGGTCTC ACCCGTCTTT CCACCTCTGC CCCCCTTCTT GCCCGACTCT GTGTATCACC 002320
002321 CATAATAAAC TACTTACAGC TTCCTAGTGt taaatttacc ctaaagctgc ctccttcaat attttaagtt taacctaaag 002400
002401 gttcttcata catagtgaac tataacccaa tgattaaaca gattgtaacc tactcttgta ccagtcacca agtttcagcc 002480
002481 aatcagaggt ggccaactgt tcaaaccatg ctcaaataag ggaaatgtca tggtgtaact aatccagctg tttctatacc 002560
002561 ttacttctgt tttcttaggt cactttcctt ttttgtccat aaattctctc caaccactca gcagcactgg agtcactcca 002640
002641 aagctatcct ggttcagggg tctgtctgat tcacaagtca ttctttgttc aattgagctc tgctaaattt aatttgtctg 002720
002721 aagtttttct tttaacagat ggtgtcagaa atggacccca aagtagagct cccagtgatc ccccaggagc actgagtgac 002800
002801 cacaaggggt acctgctggg cccgtcctct cgcagtgtcc actgctctct tacagcaact ggagattgtg gctgcattct 002880
002881 ctctcagatt ctgaagctcc atacattgcc gttttcagct gttcaagctt gcttgagcaa atttttgatc ttagctgagt 002960
002961 ttggaagtcg atagacattg gactgggtcc aggatttgat tggatctgat aattaactgg cttggatcca gttagatgcc 003040
003041 tcggttatct gactgggtca gatagaaacc gccagtaaat attttaataa caatactgca ggggtatgaa ctctggcttt 003120
003121 aagaaactca caaggaattt tatgttctat accctttgtt tctttttctt gtgtgcttcg gtcaggaaaa atcattagtc 003200
003201 aagttaatca aggggatctg agagccaaat acaagattca acgtaaaaat ggaatccttg ggctaggcgt ggtggctcag 003280
003281 gcctgtaatc ccaggacttt gggaggctga ggcaggcgga tcacctgacc ttaggagttc gagaccagtc tggccaacat 003360
003361 ggtgaaaccc cgtctccact aaaaatacaa aaattagcca ggcgtggtgg tgggcacctg taatcccagc tactttggag 003440
003441 gctgaggcag gataatcact tgaacccagg aggcagaggt tgcagtgatc tgagattgca ccactgcact ccagcctggg 003520
003521 caaaagagcg agactccatc tcataaataa atacataaat aaataaagaa atccttaatt tctgcggaac tgagtgctct 003600
003601 accttctggc tacacctacg tatacctgta tgaggtatag gccctggaag cagcaaacac ttacagaaat ggtgaaatct 003680
003681 tactaaaggt aatctaaagt tatggtggaa catcccaaat gaacaacact gcactttagg aagtacatat aaaaatgaag 003760
003761 tctcccaatt tagtattatt cagggatggc tgttgaagtt cagaagcttc taaaaagatt ccaataattt tacagattct 003840
003841 tttaaaagat tctttgtaaa aggcaaataa aaagcttaag tgactaatca gaaaaattag gtcttctaac cttttgtcat 003920
003921 tgttactgtc ttgccctgaa agggaaaaga aagctggata aagtatttat agaagataga ggacctgtgg tggctcatgc 004000
004001 ctgtaatcca aggtggaagg attgcttgag gccagaagtt caagaccagt ccaagcaaca tagcaaggcc ccatctctac 004080
004081 aaaaaatgaa aataaaatta gccgagcgtg atggctcatg cctgtagttc tagcttctag agaggctgag gcaggaggat 004160
004161 tgcttgagtc caggagttca agattacagt gagctatggt cacaccactg cactccagcc tgggtgatgg agtgagactg 004240
004241 tctcaataaa aagacaaaaa ggtcaaggaa gcttttcctg atccactaac taaggacaat caaacccttc atgatctaga 004320
004321 atctggagac tgtgtcttct gggaatagta tcagagaaag actgccctta ctgcccacat gtagcaaaac tttgagacgt 004400
004401 tgaattatgg gtccataatc tcacaactca gaggggcacc tctagactct tggaactgta tatctattgg agactttaag 004480
004481 gtaaagctga acagagagac gtttttctcc agaagcagac agcaccatag tcatggacag ctttcccaag atcacagatc 004560
004561 aagacttctc tgccgtcatg agactcataa cctcttaatt ttttcttgct tatgcttctg tgaacaatag aattggaaaa 004640
004641 ggggtggtcc cgcgtgcacc catagggtat acttttattt gtggaggatt ttgctgccaa ccttatacat gggcaaactt 004720
004721 atgccttcat ggatggaaga taaagggcta atatgggtta gaaattttaa tggtaccttt gtttctccat aatcattcag 004800
004801 aaacagaaca ctggtccact cttgttaacc tacatcatag gttgaagaga acattgccag gaggccttca tccttccaga 004880
004881 tgggcaccat ttgttgggtc tttttccgtg gtatgaagaa aatgaagcaa tgattagaaa ttggtccctc ggccgggcac 004960
004961 aatggctcat gcctgtaatc ccatcacttt ggcaggccga ggcgggtgga tcacctgagg tcaggagttt gagaccagcc 005040
005041 tgaccaatgt ggtgaaacgc catctctact aaaaatacaa aaattagctg ggtgtgatgg tgcacacctg taatccagct 005120
005121 actcgggagg ctgagacagg agaattgctt gaacctggga ggcagaggtt gcagtgagcc aagatcaccc cactgcattc 005200
005201 caggttgggc aacagagcaa gactctgtct caaaaaaaaa agaagaaaga aagaaattga tccctcataa taggctgtat 005280
005281 agcagattct actgcaaagg ctatggttgc acaacagact tctttgaatt tgcttgctaa acttttactg gataatactg 005360
005361 ggattacagg tgtgagccac tgtgcccagc cTCTCCTGTT TAACTGTATT CATTCTAATG TTTACTTACT TCTTTAATTT 005440
005441 GTAAAATTGG GTCACTTAGA GTTTTTTTAG CCTATCTTGC CATTTAGCCA CTGTTACTGA TAATTTGGAT GGAAAAGAAA 005520
005521 AATAAATTAT ATCACCTCTC ATCTTCAGTG TAT
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Predicted Small Protein

Name NONHSAT027366_smProtein_4769:4915
Length 49
Molecular weight 5526.2999
Aromaticity 0.104166666667
Instability index 58.68125
Isoelectric point 10.7368774414
Runs 7
Runs residual 0.0197368421053
Runs probability 0.0230903172079
Amino acid sequence MVPLFLHNHSETEHWSTLVNLHHRLKRTLPGGLHPSRWAPFVGSFSVV
Secondary structure LLEEEELLLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLEEEEL
PRMN -
PiMo -