NONHSAT027733

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT027733

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4587 nt

Genomic location

chr12+:40916287..40928605

Exon number

15

Exons

40916287..40917247,40917391..40917444,40918318..40919423,40920075..40920128,40920898..40921589,40921859..40921912,40922059..40922109,40922979..40923032,40924075..40924122,40924260..40924313,40924859..40926084,40926827..40926880,40927035..40927085,40927958..40928011,40928513..40928605

Genome context

Sequence
000001 AACTTTATAT CTGGAAGTTC TAACACAGAT AGCTTAACAA GAAATACCTC TTATTTTAAT GTCAGATGTC ATGATTTTTT 000080
000081 TAAGGCTTCT CTGATAAAAT ATCTTCTTCC AGTATTCTAA ATTCCCAGCC TTTTTCATTC TCCTCTTTCT TCCATCAGAG 000160
000161 GCCACCACTT CCACAGAAGG GACTGGTACT TCTGGAACTG GATTCAAAAC TGGTGAGAAG AAACAGCCCA TGATTTGGCA 000240
000241 TCATAAGTAT TAGGTCTCTC AAGCTTTTCT AGAGAGAGTT TGTGTTTGTG TTATTTAGGG ACATTGCAAG TGATTCAAAA 000320
000321 TAGATTTGCT AGTGGAGGTA CGTTTTGTTT TGAAAATCCA CTAATTCTAA AGTGGATCAT TACTGCTTCA TTTCTGAGGA 000400
000401 TACGATGCAC TTCTCCATTT ATGTTCCAAC TCTCGCTAGC AGTTTAGGTG GAATTCAGAA AGTTTCAGTG CATGTGTGTG 000480
000481 AAACAGAAGA GCTCTGTGGA ACCAGGACAC ATACATTTAA CGTGTACATT TGAACAAAAA TGCTGGCTCA GTATTTTCTC 000560
000561 CTACATGTGA AGTTCAATAC ATTCAAACTC TTTTTCCTCC TCTTTCTATC TCACAGCAGG CATCACTGCA GCACCAGGGA 000640
000641 AGCAAGCAGC TGAGCATTGG GAAAATGCAT CTAGTTTCTC TCTTATCAAA TTTTCAGTTG TGCTTGTACT TGGAAACATT 000720
000721 GTATCTCCTT TTGTTATGAA TTGCTGAAAG CAGACAAATA CATCAAATTT TCCACTTGCC TCGTGCTCAG AGAAAGAGGA 000800
000801 TTCTGTTATG GCAAATAAAT ACAGAAATAT AGCATATACC TTTTAGATTC GGGTCCTCAT TTGACTTACT CGTTCACTGT 000880
000881 GATCACCTCA GTTTCTTTGT GTTTCAGGCA CCTCAGAGGT AGCTCCTGCC ACAACGGTTG CCCCAGGAAG TTTCAGCACA 000960
000961 GCAGCCACAA CTTCTCCTGG AGCAAGTGGA ATGACTGGGG TTACAACAAC TACAAAGACC ACAACTTCCC TAGGAGGAAG 001040
001041 TGGCACCACT GGAGCAAAAA TAAAATTAGG TAAAGACTTT GGAGTATTTG TATTTATTGT TGTTCTTTGA TCGATTTCTT 001120
001121 AGAGAAAAAT TTTTAATGAG CTTTTTATTT GAAAATAAAT TTAAATTACA GAAAATTATC ATAGATAATG CAGAGAATCT 001200
001201 TTTTAATGTG GAATGTGGGT TTAAATTTCC TTTGAGGCTG TAATATTTCA AGAAAACAGA GTTTGTTCTT GGATTTGGAC 001280
001281 TTGTAAACTC TTGAGACCAA AATTTCTAAA GTCTTTCCCT TCTGAGAGAC TAACCTCAGG GTTCTAGGTC TCTGGAGAGG 001360
001361 AGACTTGCAA TAATAGCTCT GGTTTTGAAA AGGTTTTCCC TTTGAAAAGG GCATAGTCTG TATGCCATTA GTGTACTGAT 001440
001441 TTCTACAATG TAGAAATCAC CAAGATGTCA TATTTTAGTT TAGAGATAAA AATTCAAAAT TGTCTTTCTT CCTTCTTGTT 001520
001521 CTTTCTTGTT TTCTCCTCTT CTTTCTTCTC CCTTTCTCTT TTGATTTTCA GTAGGAACCA CCACTACAGC ACCAGAAAGT 001600
001601 AGGACAGGTA AACTTGGGGA AAGCCTTTCA TATGACCTTC AACTTTGAAC AAATCTTGGT AATAATATTC GGGGCAGGAA 001680
001681 TATTAGCCAC TGCGTTACCC TTGGCTTTGC AAAAGCACAC AATAAACCGG AAGCCTGTTA GTCCTCATGT CAGTTATAAT 001760
001761 TTCAGGAAGT GTGCTTTCTT GCTTCAAAGT CACAAATAGA CATACTGTTG GCCACATTTT TCCAAGGGTC ATGAAAGAGT 001840
001841 TCCCATATCC ATCTTTCTCT TTTCTTTTCT ACCTTGGCAC AGCTGGAGTG CCCTCTGGTA CAAGAGTCAC CCCTGGGAGC 001920
001921 TCCAACTCAG GTAAAGCACC AGGCTGGGAG GAACCACTGC TTGGAAAGTG CTCCTCAGTG AGGTGTCTGC CTGGGTGACC 002000
002001 CTACCGTACT CTTCTCAGAT TCTTCTAATC TTTGCCCTCA CTGCCATTCT TTTTCCCTGT TTTGCAGAGG CCACAACTTC 002080
002081 TGTAGAAGAA AGCAGAATAA CAAGAGCCGA AGTAATCACA GAGGCCACAA CTTTCTCAGG AGGCAGCGGG GCCACCTGAG 002160
002161 CAGGATTACC CAGAGGTACC ACTGGAGAAT TTTCTGGAAC GAACTTTATA TCTGGAAGTT CTAACACAGG TAGCTTAACA 002240
002241 AGAAGTAAAT TTTTATTTAA TGTCAGCTGT CATATTTCTT TTATGGCTTC TATGGTAAAG TAATATCCCA ATATCTTCTT 002320
002321 CCAGTATTCT AAATTCCCAG CCTTTTTCAT TCTCCTCTTT CTTCCATCAG AGGCCACCAC TTCCACAGAA GGGACAGGTA 002400
002401 CTTCTGGAAC TGGATTCAAA ATTGGTGAGA AGAAGCAACC CATGATGTGG CATCATAATT ATTAGGTCTC TCAAGCTTTT 002480
002481 CTTGAGAGAG TTTGTGTTTA TTTTATTTAG GGACAATGCA AGTGATTCAA AATAGATTTG CTGGTGGAGA TACTTTTTTT 002560
002561 TAAATCTACT AATTTTAAAA TGGAGCATTA CTGTTCCATT TCCGAGGATG GGATGGAATT TCTCCATTTG TGTTACAACT 002640
002641 ATTGCTAGCA GTTTAGGTGG AATTCAGAAA GTTTTCAGTG TGTGTATGTG AAACAGAAAA GAGCCCCATG GACCCAGGAC 002720
002721 ACATGCATTT ATAAGTGTAT ATGTGAACAA AAATGCCGGC TCAGTATTTT CTTTCTTATG TCTCAAGTTT TAATACATTT 002800
002801 AAACCCTTTT TTCCCTCTTC TTTCTACCTC ACAGCAGGCA TCACTTCTGC CCCAGGGAAA CAAGCAGGCA CCTCTGGGGT 002880
002881 ATCTCTTGCC ACAACAGTTG CCCCTGGAAG CTTCAGCACA GCCACAACTT CTTCTGGAGC AAGTGGAATA ACTAGGGCTG 002960
002961 GCCCCAACTC AGAGACCACA ACTTCCCTAG GAGGAAGTGG TACCACTGGA GCAGAAATAA AATCAGCTGC AGTGCCCTCT 003040
003041 GGTACAACAG TTGCCCCTGG GAGCTCCAAC TCAGAAGCCA CAACTTCTGT AGGAGAAAAT GGAAAAACAA GAGGTGAAAT 003120
003121 AATCACAGAT ACTACTGAGG GCACCTCTGG CAAAGTTCTG GAACCTGGAA GTGCCCACAC AGGTCAGGAA TTCTGAACAT 003200
003201 GGCCCCTTAA GCAATATCAG CTTTGGGAAA CCCAGAATGT CCTGTCCAGT CTTTATACCT CCAATTCCTC CCTCTCTCAG 003280
003281 AGGCCACAAC TTTCCCAGGA GGCAGTGGGA CTACCCGAGC AGGACCACCA GGAGGTGAGC TTGTCAGGCT GAGGCCTGGG 003360
003361 GCTCTCATCA TCTCTCTATC TGGGTGGCTG CAGTGAACAG TAATGAACAG TAATGCAGTG AAAGTCTTTT GAGGGAGGGT 003440
003441 CCTGCATTTT CTCTGTGGCC ACAGTGTGTC ATATCAACCT GGTCAGTTAT TCTGCTTGTG AATTCATGAC CTCAGATGTC 003520
003521 TCAGCCAGGC TGCCTTCAGT GTCCTGGCTT ATGGAAACGA TTTTTTTCTG ATATGAAGTA TGAGCGTATA TTGCATATAT 003600
003601 TCCAACTTTC CAGGACTTCC AACTCTCCTT ACCCAGTTTT CCTTTCCACC CACAGTTTGA GACATTTTCT ATCATTTTTC 003680
003681 TCCTTTACTT ACACATGATA TTTCTCCCCT CCTACAAAAC TTAGTGAAAA CAACTGATTA TTAAAATCCT CCAAGTTGTA 003760
003761 TCAAAGAGTC CTACTTATAA ATATAGAAGT GTGCTTTGTT TCTCCCGTAG GCACCTCTGT CACACCAGGG GGCTATGCTC 003840
003841 CTGGAAGGGA AATAGGTCAG GGTGATTTAA GCCTTATTCG TCCCTTCCCT CATAGAGAAA GGGAAACCCA GTAGCAACAC 003920
003921 ACACGGCCCA GGTTGGCCTG GAAAATCAAG TACTTGGAGA CTGTTCATTT TCCATTCTCT ACAGGGATAC AGTGTCCTCA 004000
004001 GGAAAGGGCT TCCAGTACTT TAGGGCCACA CATGGATGCT TCCAAGCTTA ACTGGGGAGA TAATGATCTA TTGCTCCATT 004080
004081 TCCCTTTTTT GGCATTTTAG GTACCACTGG AGAATTGTCT AGAATGACCA TTATACCTGG AAGTTCTAAC ACAGGTAGCT 004160
004161 TAACAGGAAG GGAATGCATC TTATTTAATG TCAGATGTCA TGATATCTCT TTTAGGGATG CTATTATAAA GTAATACCCC 004240
004241 AATATCCTCT GTAGTATTCC AATTCCCAGA TGTCACTATT CTCCTACTTT TTTTCCTCAG AGGCCACAAC TTCCACAAAA 004320
004321 GGGACTGGTA CTTCTGGAAC TGGCTTCAAA ACTGGCACCT CTTGGGTGGC GCCTGGCACA ACAGTTTCCC CTGGAAGTTT 004400
004401 CAGCACAGCC ACAATTTCCC CTGGAGCAAG TAGAACGACT GGGGCTGCAC CTGCCGCAGA AACCACAACT TCCCTAGAAG 004480
004481 GAGGTGGCAC CACTGGAGCA GAAATAAAAT CAGGAGCCAC CTCCGGAGTA CCGGGAAGTA AGACAGGTAA ACTTGGGGAA 004560
004561 AGCCTTTCAA ATGACCTTCA ACATTGG
[back to top]

Predicted Small Protein

Name NONHSAT027733_smProtein_3515:3697
Length 61
Molecular weight 7183.234
Aromaticity 0.2
Instability index 71.9066666667
Isoelectric point 9.58880615234
Runs 9
Runs residual 0.000265957446809
Runs probability 0.0495593632848
Amino acid sequence MSQPGCLQCPGLWKRFFSDMKYERILHIFQLSRTSNSPYPVFLSTHSLRHFLSFFSFTYT
Secondary structure LLLLLLLLLLLHHHHHHHHHHHHHHHHHHEEELLLLLLLEEEELLLLHHHHHHEEEEEEL
PRMN -
PiMo -