NONHSAT027733
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027733 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4587 nt |
Genomic location |
chr12+:40916287..40928605 |
Exon number |
15 |
Exons |
40916287..40917247,40917391..40917444,40918318..40919423,40920075..40920128,40920898..40921589,40921859..40921912,40922059..40922109,40922979..40923032,40924075..40924122,40924260..40924313,40924859..40926084,40926827..40926880,40927035..40927085,40927958..40928011,40928513..40928605 |
Genome context |
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Sequence |
000001 AACTTTATAT CTGGAAGTTC TAACACAGAT AGCTTAACAA GAAATACCTC TTATTTTAAT GTCAGATGTC ATGATTTTTT 000080
000081 TAAGGCTTCT CTGATAAAAT ATCTTCTTCC AGTATTCTAA ATTCCCAGCC TTTTTCATTC TCCTCTTTCT TCCATCAGAG 000160 000161 GCCACCACTT CCACAGAAGG GACTGGTACT TCTGGAACTG GATTCAAAAC TGGTGAGAAG AAACAGCCCA TGATTTGGCA 000240 000241 TCATAAGTAT TAGGTCTCTC AAGCTTTTCT AGAGAGAGTT TGTGTTTGTG TTATTTAGGG ACATTGCAAG TGATTCAAAA 000320 000321 TAGATTTGCT AGTGGAGGTA CGTTTTGTTT TGAAAATCCA CTAATTCTAA AGTGGATCAT TACTGCTTCA TTTCTGAGGA 000400 000401 TACGATGCAC TTCTCCATTT ATGTTCCAAC TCTCGCTAGC AGTTTAGGTG GAATTCAGAA AGTTTCAGTG CATGTGTGTG 000480 000481 AAACAGAAGA GCTCTGTGGA ACCAGGACAC ATACATTTAA CGTGTACATT TGAACAAAAA TGCTGGCTCA GTATTTTCTC 000560 000561 CTACATGTGA AGTTCAATAC ATTCAAACTC TTTTTCCTCC TCTTTCTATC TCACAGCAGG CATCACTGCA GCACCAGGGA 000640 000641 AGCAAGCAGC TGAGCATTGG GAAAATGCAT CTAGTTTCTC TCTTATCAAA TTTTCAGTTG TGCTTGTACT TGGAAACATT 000720 000721 GTATCTCCTT TTGTTATGAA TTGCTGAAAG CAGACAAATA CATCAAATTT TCCACTTGCC TCGTGCTCAG AGAAAGAGGA 000800 000801 TTCTGTTATG GCAAATAAAT ACAGAAATAT AGCATATACC TTTTAGATTC GGGTCCTCAT TTGACTTACT CGTTCACTGT 000880 000881 GATCACCTCA GTTTCTTTGT GTTTCAGGCA CCTCAGAGGT AGCTCCTGCC ACAACGGTTG CCCCAGGAAG TTTCAGCACA 000960 000961 GCAGCCACAA CTTCTCCTGG AGCAAGTGGA ATGACTGGGG TTACAACAAC TACAAAGACC ACAACTTCCC TAGGAGGAAG 001040 001041 TGGCACCACT GGAGCAAAAA TAAAATTAGG TAAAGACTTT GGAGTATTTG TATTTATTGT TGTTCTTTGA TCGATTTCTT 001120 001121 AGAGAAAAAT TTTTAATGAG CTTTTTATTT GAAAATAAAT TTAAATTACA GAAAATTATC ATAGATAATG CAGAGAATCT 001200 001201 TTTTAATGTG GAATGTGGGT TTAAATTTCC TTTGAGGCTG TAATATTTCA AGAAAACAGA GTTTGTTCTT GGATTTGGAC 001280 001281 TTGTAAACTC TTGAGACCAA AATTTCTAAA GTCTTTCCCT TCTGAGAGAC TAACCTCAGG GTTCTAGGTC TCTGGAGAGG 001360 001361 AGACTTGCAA TAATAGCTCT GGTTTTGAAA AGGTTTTCCC TTTGAAAAGG GCATAGTCTG TATGCCATTA GTGTACTGAT 001440 001441 TTCTACAATG TAGAAATCAC CAAGATGTCA TATTTTAGTT TAGAGATAAA AATTCAAAAT TGTCTTTCTT CCTTCTTGTT 001520 001521 CTTTCTTGTT TTCTCCTCTT CTTTCTTCTC CCTTTCTCTT TTGATTTTCA GTAGGAACCA CCACTACAGC ACCAGAAAGT 001600 001601 AGGACAGGTA AACTTGGGGA AAGCCTTTCA TATGACCTTC AACTTTGAAC AAATCTTGGT AATAATATTC GGGGCAGGAA 001680 001681 TATTAGCCAC TGCGTTACCC TTGGCTTTGC AAAAGCACAC AATAAACCGG AAGCCTGTTA GTCCTCATGT CAGTTATAAT 001760 001761 TTCAGGAAGT GTGCTTTCTT GCTTCAAAGT CACAAATAGA CATACTGTTG GCCACATTTT TCCAAGGGTC ATGAAAGAGT 001840 001841 TCCCATATCC ATCTTTCTCT TTTCTTTTCT ACCTTGGCAC AGCTGGAGTG CCCTCTGGTA CAAGAGTCAC CCCTGGGAGC 001920 001921 TCCAACTCAG GTAAAGCACC AGGCTGGGAG GAACCACTGC TTGGAAAGTG CTCCTCAGTG AGGTGTCTGC CTGGGTGACC 002000 002001 CTACCGTACT CTTCTCAGAT TCTTCTAATC TTTGCCCTCA CTGCCATTCT TTTTCCCTGT TTTGCAGAGG CCACAACTTC 002080 002081 TGTAGAAGAA AGCAGAATAA CAAGAGCCGA AGTAATCACA GAGGCCACAA CTTTCTCAGG AGGCAGCGGG GCCACCTGAG 002160 002161 CAGGATTACC CAGAGGTACC ACTGGAGAAT TTTCTGGAAC GAACTTTATA TCTGGAAGTT CTAACACAGG TAGCTTAACA 002240 002241 AGAAGTAAAT TTTTATTTAA TGTCAGCTGT CATATTTCTT TTATGGCTTC TATGGTAAAG TAATATCCCA ATATCTTCTT 002320 002321 CCAGTATTCT AAATTCCCAG CCTTTTTCAT TCTCCTCTTT CTTCCATCAG AGGCCACCAC TTCCACAGAA GGGACAGGTA 002400 002401 CTTCTGGAAC TGGATTCAAA ATTGGTGAGA AGAAGCAACC CATGATGTGG CATCATAATT ATTAGGTCTC TCAAGCTTTT 002480 002481 CTTGAGAGAG TTTGTGTTTA TTTTATTTAG GGACAATGCA AGTGATTCAA AATAGATTTG CTGGTGGAGA TACTTTTTTT 002560 002561 TAAATCTACT AATTTTAAAA TGGAGCATTA CTGTTCCATT TCCGAGGATG GGATGGAATT TCTCCATTTG TGTTACAACT 002640 002641 ATTGCTAGCA GTTTAGGTGG AATTCAGAAA GTTTTCAGTG TGTGTATGTG AAACAGAAAA GAGCCCCATG GACCCAGGAC 002720 002721 ACATGCATTT ATAAGTGTAT ATGTGAACAA AAATGCCGGC TCAGTATTTT CTTTCTTATG TCTCAAGTTT TAATACATTT 002800 002801 AAACCCTTTT TTCCCTCTTC TTTCTACCTC ACAGCAGGCA TCACTTCTGC CCCAGGGAAA CAAGCAGGCA CCTCTGGGGT 002880 002881 ATCTCTTGCC ACAACAGTTG CCCCTGGAAG CTTCAGCACA GCCACAACTT CTTCTGGAGC AAGTGGAATA ACTAGGGCTG 002960 002961 GCCCCAACTC AGAGACCACA ACTTCCCTAG GAGGAAGTGG TACCACTGGA GCAGAAATAA AATCAGCTGC AGTGCCCTCT 003040 003041 GGTACAACAG TTGCCCCTGG GAGCTCCAAC TCAGAAGCCA CAACTTCTGT AGGAGAAAAT GGAAAAACAA GAGGTGAAAT 003120 003121 AATCACAGAT ACTACTGAGG GCACCTCTGG CAAAGTTCTG GAACCTGGAA GTGCCCACAC AGGTCAGGAA TTCTGAACAT 003200 003201 GGCCCCTTAA GCAATATCAG CTTTGGGAAA CCCAGAATGT CCTGTCCAGT CTTTATACCT CCAATTCCTC CCTCTCTCAG 003280 003281 AGGCCACAAC TTTCCCAGGA GGCAGTGGGA CTACCCGAGC AGGACCACCA GGAGGTGAGC TTGTCAGGCT GAGGCCTGGG 003360 003361 GCTCTCATCA TCTCTCTATC TGGGTGGCTG CAGTGAACAG TAATGAACAG TAATGCAGTG AAAGTCTTTT GAGGGAGGGT 003440 003441 CCTGCATTTT CTCTGTGGCC ACAGTGTGTC ATATCAACCT GGTCAGTTAT TCTGCTTGTG AATTCATGAC CTCAGATGTC 003520 003521 TCAGCCAGGC TGCCTTCAGT GTCCTGGCTT ATGGAAACGA TTTTTTTCTG ATATGAAGTA TGAGCGTATA TTGCATATAT 003600 003601 TCCAACTTTC CAGGACTTCC AACTCTCCTT ACCCAGTTTT CCTTTCCACC CACAGTTTGA GACATTTTCT ATCATTTTTC 003680 003681 TCCTTTACTT ACACATGATA TTTCTCCCCT CCTACAAAAC TTAGTGAAAA CAACTGATTA TTAAAATCCT CCAAGTTGTA 003760 003761 TCAAAGAGTC CTACTTATAA ATATAGAAGT GTGCTTTGTT TCTCCCGTAG GCACCTCTGT CACACCAGGG GGCTATGCTC 003840 003841 CTGGAAGGGA AATAGGTCAG GGTGATTTAA GCCTTATTCG TCCCTTCCCT CATAGAGAAA GGGAAACCCA GTAGCAACAC 003920 003921 ACACGGCCCA GGTTGGCCTG GAAAATCAAG TACTTGGAGA CTGTTCATTT TCCATTCTCT ACAGGGATAC AGTGTCCTCA 004000 004001 GGAAAGGGCT TCCAGTACTT TAGGGCCACA CATGGATGCT TCCAAGCTTA ACTGGGGAGA TAATGATCTA TTGCTCCATT 004080 004081 TCCCTTTTTT GGCATTTTAG GTACCACTGG AGAATTGTCT AGAATGACCA TTATACCTGG AAGTTCTAAC ACAGGTAGCT 004160 004161 TAACAGGAAG GGAATGCATC TTATTTAATG TCAGATGTCA TGATATCTCT TTTAGGGATG CTATTATAAA GTAATACCCC 004240 004241 AATATCCTCT GTAGTATTCC AATTCCCAGA TGTCACTATT CTCCTACTTT TTTTCCTCAG AGGCCACAAC TTCCACAAAA 004320 004321 GGGACTGGTA CTTCTGGAAC TGGCTTCAAA ACTGGCACCT CTTGGGTGGC GCCTGGCACA ACAGTTTCCC CTGGAAGTTT 004400 004401 CAGCACAGCC ACAATTTCCC CTGGAGCAAG TAGAACGACT GGGGCTGCAC CTGCCGCAGA AACCACAACT TCCCTAGAAG 004480 004481 GAGGTGGCAC CACTGGAGCA GAAATAAAAT CAGGAGCCAC CTCCGGAGTA CCGGGAAGTA AGACAGGTAA ACTTGGGGAA 004560 004561 AGCCTTTCAA ATGACCTTCA ACATTGG |
Predicted Small Protein
Name | NONHSAT027733_smProtein_3515:3697 |
Length | 61 |
Molecular weight | 7183.234 |
Aromaticity | 0.2 |
Instability index | 71.9066666667 |
Isoelectric point | 9.58880615234 |
Runs | 9 |
Runs residual | 0.000265957446809 |
Runs probability | 0.0495593632848 |
Amino acid sequence | MSQPGCLQCPGLWKRFFSDMKYERILHIFQLSRTSNSPYPVFLSTHSLRHFLSFFSFTYT |
Secondary structure | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHEEELLLLLLLEEEELLLLHHHHHHEEEEEEL |
PRMN | - |
PiMo | - |