NONHSAT027935
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027935 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2979 nt |
Genomic location |
chr12+:48113034..48136077 |
Exon number |
4 |
Exons |
48113034..48113055,48113388..48113482,48132698..48132794,48133326..48136077 |
Genome context |
|
Sequence |
000001 GCCTTCCTGT GTTTTCTGAA TGTTCCCCCG CACTTTGCCT GCCACCATGT AAGATGTGTC TTTGCGCCTC CTTTGCCTTC 000080
000081 CACCATGATT GTGCGGCCTC CCCAGCCATG TGGAACGGCC CTGAAGGCAG CCCGTATTTG TCTGGATGTC TTCATTCTTC 000160 000161 CAGTCTAAGA ACTCCTAATT CATCTCTGCA CTCCCTGAGG CATCAGCACT TGAGAGTAAA CTCCTTTGAA TCCCTTGAGC 000240 000241 CCCACGAGGT GGATTTTCTC TCAAGAGCTC CCAGGCTATG CTGATGAAGT ACCTCTTCTC TGCTTCTCTC CAGAATAGTC 000320 000321 AAAACCCTCA AAATCCTCAA AAGTTCCTGG AGGTGGGAGG TTCCACCCCC AACTCTATCC TCGCCTCTTC TACTGGTCTA 000400 000401 GCCCGCAAGC CCCTCGGAGT TCCTGAGGGG CAGACAGGCC CTGGTGCACA CGGGCGCTCC ATGCCAGGCC CTTGGGCTCT 000480 000481 GGAGCCCCTG ACACTGCCCT GGCACCTCAG ACCCCAGGAC TGGACACCCA CATGCTCCAG CCCAGTCTTC ACACAGGATC 000560 000561 TCCTGCCCCC ATGCACACAC TGAGGGCCAG AATGCACCGT GCAACCCCTA TCCTAGTGCT GAACACCCCT TCCTCAGCCA 000640 000641 GCTCCCCAAA CTCACAGGCT GGAGCTAGGC CCTGGGCCGA GGTTGGGAAC CCTGAAAGTG ACAAAGGACG AGTAGAGGGG 000720 000721 CTGCAGGGAA GCCAAGAGTG AGGGTGTCTG GAGGGCAGGG CCGAGCCCAG CTGATCCTAG CAGAGCCAGG CCGGGCAGGG 000800 000801 TGGAGCACTC ACCAGCAGCC TCTCGAGGGC GGAGTACAGC TTCCGGACTT TGTGAGGCAG CCGCTGTGAA AAGGAGGCAG 000880 000881 ATGAGCGGCT GCTCTGGGGG AGGCCCAGCC CCATCCAGCA CTCCCAGGAG GGCCTGAGGC CTGACCTCAG GAGGGGGCCC 000960 000961 TCCAGACCAC ACTTACCTCC CAGGTGTGGG CTAGGCGGCT GATGGCCGAG TTGCTGAGGC CAAACATGAC GGCAAAGAAG 001040 001041 GAATTGAGAT TCTTCTGCTC CTTGAGGCTG TGAGCAGAAG ACCCAGAGAC CCTCAGGGTA AGGGAAGCAG CCACCCCTAC 001120 001121 AGTGCCCCCA GACAACAGCC AGGCCAGCCT CTGCAGAGAT CCAAGCTGGA TGGGGTGGGA AGGCAGAGAC TCCAGGGGAC 001200 001201 CCAGGGAACA AATAGGGTGG CAGATTTGGC AACATACTAA GCAAAGAGGG GGGCTTAGGA AAAGGTAGCC GGGGGACTCT 001280 001281 GGCCACGCCC TACCCACTGG ACAGGGACTC ACTGGGCCGC CAGCTTAATG AACTTCCTGA GCAGCTGGGC CCGGGGGCCG 001360 001361 GGCACGGGGC AGAGACACAG CTCGGTGGCC ACCCAGTACT GCAGCTCATT GAAGCGGCGC ATGAAGCGCT CCAGGTTGGC 001440 001441 GGTGGTGACA TCCCGCAGAT GCTGGGGGCC CAGCACATAG TGGATCAGCT CCACCTGGGT GGGGTCAGCA GGAGAGGTCA 001520 001521 GTGAGTGCTG AGCCGAGCCG GGCGCCCCGC CGCCTGCTCT CCTCCCCCAG CTCTGCCTCC CACACCTGGT GGATACTGTT 001600 001601 GAAGAGGCTC CAGTCGTGGT CCGTCAGCTG GCCTGCCAGG TCCTTGGCAC TCACCAGGTC CAGCCCCTCA GCAGAGCCCA 001680 001681 CAGTGGGCCC CAGCTGGTCA GGGTGTGGGA TCTGCGGGTG GGAGAGTGCT CAGGGGGCTG CCTGAGGAAT CCAGGGAAAG 001760 001761 GCACAGGGTA GGGGGAGAGG GTTGGGGCAA GGACTCTATG CTCGTGTTAG GAGGAGGGTT AGGAGGGCAG GAGTGGGGAG 001840 001841 TAGAGGGTCT CTAGGGGCTA TAGCAGCTGG AGGATAGGGC TCCCCAGTGC TGAGACCCCT CCTTTTGGGC TCCTGTCTCC 001920 001921 TGGGGAACCC CTAACTAGGG CAGGTCCTCC TCTTTCTCCT TGGGAGCTCC CAACCAGTGC TACCAGCCCC TGCCCTGCAC 002000 002001 TATCTTGGGA ATTCCCCCAT CAGCTGAGGC CCACTCCTTT GTGTGCTGAG GACCCAGCAG CAGCCAGAGC CAGGCCCCTC 002080 002081 CTCCCTCTTC TCCCTGGGAC CCTCCCCAGA ATCCACCACT GCCACACTCA AAATAGATCT CCTCCCTGGG CCCTGGCACC 002160 002161 CTGCCTGGTC CCTACCAGCT CATGCACTTC CTGTGGGTTG ACAACAAAGA GACGCTCATT GAGCCCCAGA GATGTGGCCA 002240 002241 CACCACGGGC ATCTGGCTGC AGGCCAATGG CATCTGCAAA GACAGCAGAG GCGGACTGGG TGGGGGAAGG GAGGGAGGCC 002320 002321 GGGGACCAGC TGGATGCCAG GGTGGAGGTG CTGTTTGGGA GGCTGAGAGG TTGTTTCTCC TAGTAGCGGG GTTGAAGTCC 002400 002401 TGGGTGGTGC TCAGAATACA CAGGTGCATG TGCCCACGCA GCCACGCAGC CCAGGGAAGC ACATCCAAGA GGATGAGAAA 002480 002481 AGATTCTCAG TGAGTCAGGA AGAACCTGGG CAGGGTCTGA GCCTCCCTCA GCCTCACTTT CTTCCCTGGT AAAATGGAGA 002560 002561 CAATAAGACT TGCCCCAACT ATTTCATAAG TCAAATAAAA TAATGTATAT AAATAGTAGC TATAAGTACA TGCTATGTAT 002640 002641 AAAAGCCCTT TGAAAATTGG GAAGTGTCTT ATATAAGCCT TGGTGTTGAT TTTCATCAGC TCCTCATGGA CTGGGACTGT 002720 002721 GCTTGAGTCC CCAGTCCCTA GAGCAGTGGC CTCCAAAGTA AGGTACATCA GATCATCCAT GTGCCTGGGG AAAATATGAG 002800 002801 CTCTTCTACT TACGTTTACT TTTTCTACCT GCTTTGCATT TCTACTCCAT CAATTTCTAT TTTATCTATT TTTATTATAT 002880 002881 TAATGTAGTA ATATATGTGT ATTACTTACA AACAAATATT CACACAGTGG GGTGTGGGTT TTAATTAAAT GTTGGTTATT 002960 002961 GAAAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT027935_smProtein_53:283 |
Length | 77 |
Molecular weight | 8435.4308 |
Aromaticity | 0.0789473684211 |
Instability index | 54.8815789474 |
Isoelectric point | 6.62738037109 |
Runs | 9 |
Runs residual | 0.0229885057471 |
Runs probability | 0.0443286423678 |
Amino acid sequence | MCLCASFAFHHDCAASPAMWNGPEGSPYLSGCLHSSSLRTPNSSLHSLRHQHLRVNSFES LEPHEVDFLSRAPRLC |
Secondary structure | LEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLEELLLLLL LLLLHHHHHHLLLLLL |
PRMN | - |
PiMo | - |