NONHSAT027940
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027940 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
783 nt |
Genomic location |
chr12-:48140640..48142695 |
Exon number |
4 |
Exons |
48140640..48140682,48141327..48141409,48141495..48141692,48142237..48142695 |
Genome context |
|
Sequence |
000001 TGCGGCTGGA AGAACATGGC AAAGTGGTGC TGGTGCTGGA GAGAGCCTCT CAGGGCGCCG GCCCTTCCCG ACCCCCAACC 000080
000081 CCAGGCAGGA ACCGGTAATA CACCTGCCAT GCTCCCTCTC CACACTGTCC CTCCTTTCAT TTCCCAATCT TTGCTCCCTT 000160 000161 CCCCTGTGTC ATATCCCTGC CCTCTGGCCA CTTGTGGATG GAGAGGTATT GAGGGACCAG GATGTGCCTG CTGAGCCAGT 000240 000241 CTCCTCCCTG CCCTAAGGTG GGACAGGGCT ggctaatgga gaaaaatgat gtaattgatt attgatgtct gcccaggtgt 000320 000321 gggagtgggg agtagtggca ccagtgccaa agattggcca tttctgCTAG GTATACAGTG ATGTCTGGCA CCCCAGAGAA 000400 000401 GATCCTAGAG CTTCTGTTGG AGGCCATGGG ACCAGATTCC AGTGCTCATG ACCCAACAGG TGGGTGGCCC TGCTTGGATG 000480 000481 TTGTGGTTCC CTTGACTGGT GCCCACCTTC CATGTGGAGC CTGCGGGTGG CAGCGAGCAG GAGCGCAGCA CCTACGTCTG 000560 000561 CAACAAGAGG CAGCAGATCT TGCGGCTGGT CAGCCAGTGG GTGGCCCTGT ATGGCTCCAT GCTCCACACT GACCCTGTGG 000640 000641 CCACCAGCTT CCTCCAGAAA CTCTCAGACC TGGTGGGCAG GGACACCCGA CTCAGCAACC TGCTGAGGGA GCAGTGGCCA 000720 000721 GAGAGGCGGC GATGCCACAG GTTGGAGAAT GGCTGTGGGA ATGCATCTCC TCAGATGAAG GTG |
Predicted Small Protein
Name | NONHSAT027940_smProtein_380:631 |
Length | 84 |
Molecular weight | 8593.7053 |
Aromaticity | 0.0361445783133 |
Instability index | 50.1120481928 |
Isoelectric point | 5.25042724609 |
Runs | 9 |
Runs residual | 0.031593038822 |
Runs probability | 0.048528921078 |
Amino acid sequence | MSGTPEKILELLLEAMGPDSSAHDPTGGWPCLDVVVPLTGAHLPCGACGWQRAGAQHLRL QQEAADLAAGQPVGGPVWLHAPH |
Secondary structure | LLLLHHHHHHHHHHHLLLLLLLLLLLLLLEEEEEEEELLLLLLLLLLLHHHHHHHHHHHH HHHHHHHHLLLLLLLLEEELLLL |
PRMN | - |
PiMo | - |