NONHSAT027958
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027958 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1288 nt |
Genomic location |
chr12+:48276432..48295308 |
Exon number |
4 |
Exons |
48276432..48276495,48290390..48290826,48292128..48292563,48294959..48295308 |
Genome context |
|
Sequence |
000001 AAAAACAGAA AGCCAGGGAA GTTGCGGCTG ATGAGGAAAC ACCTACCTGA AGGAGCAGGG GGCAGGCTCC AAACCTTCGG 000080
000081 GGGGCTTTGC TAAAAGACAC CCAACCTCGA ATTAGTTCCA CTCCATTTCC AGTTTCCCAG GCTGTGCACG TGGTTTCAAC 000160 000161 AAAGCCGGTC AGACCTCAAA TGGAGTTCAT TATAATGGAA TTTTACCTGA GGCAGCCCCT CCCCCACTTC TTAACATCAT 000240 000241 GGCACCCAAG ATATGGGTGT GCTTGCCAAA GAGGCTGGGC AGAAGTCACT TCCTGCCCCT GGCAGAAGTC CGGAAATTCA 000320 000321 GAGCCGTTTG GAACAAAGAA CTCTGCCCCG AAGGTGTTTT CCAGCATCTC CCTGGCCAGA TTGGAACTGC CCCATTCACC 000400 000401 CTCGTACCAC CTGCTGCGTT TTTTCCAGCC CTCCTAGACA GGAAGGGGAG GAGGGAAGAC TGAGCTGAAT GACCAGGACA 000480 000481 CTGCAGGAAA GGCAATGCAC AAAAATGAAG CCTGTATCAA GTGTTGAAAA GGATGGAGAA CAATGGAGAC TTTCATCCAC 000560 000561 TGCTGGAAGT GTTTTTTGGG ACAACCACTT TGGAAAGCTG TTTGGCACCC TATAGCAATG CTGAACATAG AATTCCATGG 000640 000641 GAGGCAGCAA TTCCAACCCT AGGTATGTGC CCTACAGAAA TTCTTGTGAG TTTCTCATGA ACCAGAAGAC AAGTATAACA 000720 000721 TGTACACCCC TAGCAGTACT GTCCTATCGT AATAGCTCAA CTGGAAACAA CCCAAATGTC CATCAGTGAG AGGAGGATAT 000800 000801 ACAAATCGTG GTGTATTTTT CCAATGGAAT TCTACACAGC AGTGCAAACT CATGAACTGC AGTGGTGTGC ATCGACATGG 000880 000881 ATGAACCTCA GAAAACTCAT ATTGACTCAA AGAAGAGTGC ATCACAGAGA ACACACAGTG AGAATGACTT CCTTCCTGGC 000960 000961 AGAGTAACTG AGAGTCACTA CATGGTCATC GTGGCGGCTC TGCTCCCTCC ACGCCTATGC CCGATCACCC ACAGGCTGGA 001040 001041 CCTCTGGGGA TCCCACCCTT TGCATCTGGA CCATGAGGAC CCAGGACCCA GAAGGCAGGA CAGTTTCTCT TCTACATGTC 001120 001121 GCCACAGCGG GATGCAGGCA CTGCCATCAA CGCCTGTCAC TTGGATTGAG CAAGAACAGC CTCTCCCCAC CCTGGACCAT 001200 001201 TTCCCCAATA GTCAGACCAG ACCAAAGAGG CAAACTCTAG TGTCTTTGGG AACTGACTCT GTCTCCTGCA ATGCAGCTTC 001280 001281 TCCCTGGC |
Predicted Small Protein
Name | NONHSAT027958_smProtein_179:436 |
Length | 86 |
Molecular weight | 9859.2077 |
Aromaticity | 0.152941176471 |
Instability index | 55.2495294118 |
Isoelectric point | 8.98736572266 |
Runs | 13 |
Runs residual | 0.0163992869875 |
Runs probability | 0.0310831193185 |
Amino acid sequence | MEFIIMEFYLRQPLPHFLTSWHPRYGCACQRGWAEVTSCPWQKSGNSEPFGTKNSAPKVF SSISLARLELPHSPSYHLLRFFQPS |
Secondary structure | LEEEEHHHHHLLLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLLHHHH LEEHHHHLLLLLLLLLLEELLLLLL |
PRMN | - |
PiMo | - |