NONHSAT028175

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT028175

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1151 nt

Genomic location

chr12-:50526862..50528489

Exon number

2

Exons

50526862..50527851,50528329..50528489

Genome context

Sequence
000001 CTAGGATTCT GAACACGACC CTCTTTGAGA GTTGGGAGAT AATCGGGCCT TATGCTTCAT GGTGGCTCCT CAATGGCCTG 000080
000081 CTGCTGACCC TACAGCTTCT GCATGTCATC TGGTCCTACC TAATTGCACG GATTGCTTTG AAAGCCTTGA TCAGGGGAAA 000160
000161 Gatggaatct cgctctgttg cccaggctgg agtgcaatgt cacgatcttg gctcaccaca acctccacct cctgggttca 000240
000241 agcgattctc ctgcctcagc ctccctagta gctgggatta caggcgcatg ccaccaggcc tggctaattt ttgtattctt 000320
000321 agtagaaacg gggtttcact atgttggcca ggctggtctc taactcccga ccttgtgatc tgcccacctt ggcctcccga 000400
000401 agtgctggga ttacaggcgt gagccaccgc acctggccTG CCTGTTTTAC CTTTTAAGAT GTGACTTAGA CGCAAGAGGA 000480
000481 AAGTTCTACC TTCTTCCTGT CCCTTAGGAA TGGCTTTTGT TAAAGGATGA TAGGGTTAAG AGTTTTTTAA GAGATGGCCT 000560
000561 CAACCATTTC CTACCCCTTA CCTACCTGCT Tcagtggatt tcatattttt ctttttgaca tggggccctt ttcaaaggaa 000640
000641 atcatatgca gaaccatata aactgtataa aagcagaTTG TTAAGTTGCC TAGAAGTGGT GTGTGGTAGT TCACAAGCCA 000720
000721 CCACAAGGTG ACCATGCTGT GATATTCAAG ATATGGTTTA TATAAGGAAC TAAATACCCA CCTCACCCCA CTAGTGTATG 000800
000801 AGGCAAGTGT CCTAAGTGAA TGGGTATGTA GTGTTTCAAA TACCCATCTT ATGCCAAGAG CGAAAGAAAG GTGCCACTTA 000880
000881 ATGATAAACT CATAATTGAA CTTTGCAAGT TTTGAAGCAG TCAGACTGTA GTCAAAGGGC TAGGGATTTC AGCCTAAAGG 000960
000961 AATACAGAAT CCCAAGTGGG AGGGGCTCTG CTTGAGCAGG TACTGATACT AGGACCAAGT GATGGAATGT GGCCTAGATA 001040
001041 TTGATGATCT CCTGCATCAT TATTCCTTAT AGCTGCCATT GGCTCAGAAC TTGCTCAGTG TGCCTGTGCA TCTTGCTGTA 001120
001121 GCTACTGGAC ATCTCTGTTC TCTCCTGCTT T
[back to top]

Predicted Small Protein

Name NONHSAT028175_smProtein_161:421
Length 87
Molecular weight 9404.8149
Aromaticity 0.093023255814
Instability index 83.4534883721
Isoelectric point 7.63079833984
Runs 15
Runs residual 0.034796945505
Runs probability 0.037196019549
Amino acid sequence MESRSVAQAGVQCHDLGSPQPPPPGFKRFSCLSLPSSWDYRRMPPGLANFCILSRNGVSL
CWPGWSLTPDLVICPPWPPEVLGLQA
Secondary structure LLLHHHHHLLEEELLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLEEEEEELLLEEE
EELLLLLLLLEEEELLLLHHHLLLLL
PRMN -
PiMo -