NONHSAT028190
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028190 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1732 nt |
Genomic location |
chr12+:50677451..50679182 |
Exon number |
1 |
Exons |
50677451..50679182 |
Genome context |
|
Sequence |
000001 CGCTGGCGAC GGGACAGGGT TTTTGCTGCC CGGGGCCTAG TCTACCTCGG CACGCTTTTC TCTGAAGGAG ACACGCACTT 000080
000081 GCACGACGTG GGCCTCTGTG CAGCTCTACT TTGTCCTTAA CTCCTCTGAC TCAACGTTAT CGCAGTTTGA CTCTGGAGCC 000160 000161 ACTCAGGTTT TTCCTAAGCT CAACTCTAGC CAGCTAGGTT CCTGGTGCTT TGGGGGTAAG TTGTGTGCAG GGAGGGTGTT 000240 000241 TTACAGGAGG CTGTGTGGTG TAGTGGAAAA AGCTGAATTA AGTACATTAA TCCTGAAAAC GGTTTGACAA GGGCAGATGA 000320 000321 CGTCCAAGTT CTCCAACAGC TGTTTTTACT CCTCCATTCA GAATAGGAGC TGTGCTAATG GTTTGGAGAC CGTCAATTGG 000400 000401 CCTAGCACTT GGCCATCCTG CCCCCAAATT CTTGTCCCAG TTCCGTGCCA GCTGCATGAT GCCTTTTGAT AGTATCCTTC 000480 000481 TTTCCTGTAC CTCAAGCATA GTAGGGTTTC AGACCACAAG TTTTCTGAAG CTTTTCGGAA TTCATGCAGC TTGATGCGTT 000560 000561 ATTAGTAGGG GCTGCTCGTG GGAAAACGCT TGTAATTACA CTTCCTCAAG AAGTTAATGA AAATGTGTGA GAAGAGAGAT 000640 000641 TTCCAACAGG TGATGAATAT GCCAGCCAGT TATTCCCTTC TTCCTTCAAA TATCCAGCCT AGACTGATTT CTGGATAGGT 000720 000721 ATtgtagaaa taaaaatttc agacaaaaca aacttagatt ttgaatcgga caacagtcag aaccaaaaga ggctcagaca 000800 000801 cccctgctct agctgcccag gcatcaaact ttataggctg aacacgaaag taaagaaatt tgattggcta cagctaagcg 000880 000881 tttgccttat ttgggtatgg tcacatggga ggtccctaat tatataacca cttggctggt tgtctgtttg tgattggttg 000960 000961 aaactcCATT CAAAATCAGG TACAAGGggc cgggcgcggt ggctcacacc tgtaatccca gcactttggg aggctgaggc 001040 001041 aggcggatcc cctgaggtta ggagttcgag accagcctag ccaacatggc gaagcaccgt ctccactaaa aatacaaaaa 001120 001121 ttagccggac gtggtggtaa gtgcctgtaa tcccagctac tcgggaggct gaggcacgag aatgacttga acccgggaag 001200 001201 tggagattgc agtgagcaga gatctcgcca ctgcactcca gcctggatga gagaacgaga ctccatctca aaaaaacaaa 001280 001281 acaaacaaaa GGTGCAAGGA ATACCTCTAA ATTTTGGGTT GCTTTCTGGG TACAAAAACA ACTCCAAACT AATGGCCTGC 001360 001361 TACTTATTTT GCATTAACAG TATCAAGTAT CAAGACTCCA GCAAAAGTGG CAGACAGCAT GGGAATGCTA AAGAGCATAC 001440 001441 AATATCAATA CAGGATAGTA CTCCAGAAAA TACGTTACCC TGCATGTGGC GTTCCCTCAA TAGATGTCTC CCCTCCCCCC 001520 001521 AATTTTTTTT AGCTCTGTGC TTTAGTGGAT ACAAAAATTA CTTGCTTTCC CAAAGCCTCC TTTTGAAGAT AGAGCTAGCA 001600 001601 TTAGgttgat tgctaaattt tcagggattt tatgagccag gtcataagca caaccattat tagaaatcaa attatataag 001680 001681 ctacaattaa attatcttaa aaataaaagt aataggccag gcatgttgag tc |
Predicted Small Protein
Name | NONHSAT028190_smProtein_377:553 |
Length | 59 |
Molecular weight | 6316.4634 |
Aromaticity | 0.120689655172 |
Instability index | 64.4155172414 |
Isoelectric point | 9.49847412109 |
Runs | 9 |
Runs residual | 0.0014209928003 |
Runs probability | 0.0716500814541 |
Amino acid sequence | MVWRPSIGLALGHPAPKFLSQFRASCMMPFDSILLSCTSSIVGFQTTSFLKLFGIHAA |
Secondary structure | LLEELLLLLLLLLLLHHHHHHHHHHHLLLLLLEELLLLLLLLLHHHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooooooo |