NONHSAT028339
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028339 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
828 nt |
Genomic location |
chr12-:52599384..52604608 |
Exon number |
2 |
Exons |
52599384..52599963,52604361..52604608 |
Genome context |
|
Sequence |
000001 AGAAGATGAT GCATGTGAGC CCTGCCCTTG GGAAGCTTCC AGGTTGGGAA ATGAGGAATG AGCCTGACAC CCAGGGCCCA 000080
000081 GAGAGACCCA GGACAGAGGC AGGTCAGGAG GCAGACACGC GCTGCTGGGT AATGACGACA GCACCagtaa tcacggctac 000160 000161 tccttgttaa gtacttacta agtgcaagac tccaagctaa gcaattaata gaccttttct tgtttaatcc ttaccacaat 000240 000241 tccataggAT GTTCTCACAG AGCTACACAT GCCACAGTCA TCACTAGTTG CGAGAGTCTC CAGTGTTCAT TAAGCCTATT 000320 000321 TTGCTGGAAG TTTAGTCCCT GGAGGATTAG TCCCTGCCCT TAAGGAGTGC CAAAGAAGAC TTTGGAATCT AAGTCACATC 000400 000401 TCCCCTGCTG CAATTTTTTC CTCTTGATAA TCAAGGAATC TCACTGATAA AACTCTCAAT GAGGAGCAGC TCTCCCCATG 000480 000481 AGCAAGTTCT TGCCTTCATT GCCAGGGAGG CCCCAGCTAA GGTTATACTG GGAAAGGAAT CTCTGGGGAG TACCTGGAAG 000560 000561 AGGTCAGCTT CTCCTCAAAG GAAGCCTCTC CAGCTGGTGT ACTGCAAAGC CTTCCAAGAC CAAGTTCCCT CTTCCTGGCC 000640 000641 TCTGGAACCA GCCTGTGTGC CAGCGCTGTG TCCCCAGTAA CACACATGAG TCTCTCCCTC AGAAGCCACA GAAGGATGCA 000720 000721 gagagagacc aacccaggat tgattctcag cacttactaa ttgtgtggac ataactgctc tggacctcag ctttgctatc 000800 000801 tataaaatga gcaccctttt tatagata |
Predicted Small Protein
Name | NONHSAT028339_smProtein_458:679 |
Length | 74 |
Molecular weight | 8047.2784 |
Aromaticity | 0.0684931506849 |
Instability index | 85.798630137 |
Isoelectric point | 9.30035400391 |
Runs | 8 |
Runs residual | 0.0345558992488 |
Runs probability | 0.039844992051 |
Amino acid sequence | MRSSSPHEQVLAFIAREAPAKVILGKESLGSTWKRSASPQRKPLQLVYCKAFQDQVPSSW PLEPACVPALCPQ |
Secondary structure | LLLLLHHHHHHHHHHHHLLLLEEELLLLLLLLLLLLLLLLLLLLEEEEHHHHHLLLLLLL LLLLLLLLLLLLL |
PRMN | - |
PiMo | - |