NONHSAT028403
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028403 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
998 nt |
Genomic location |
chr12-:53437975..53440917 |
Exon number |
4 |
Exons |
53437975..53438001,53438849..53439437,53439745..53439845,53440637..53440917 |
Genome context |
|
Sequence |
000001 ccacgttccg ccagctcccc acccctcggc ctcctctcct ccccaccttc tcccgcgAAC CCACACTCAC AAAGAGCCGA 000080
000081 GGGGAGAGAG GGTGCGCAGA CGGCCAGCCG GGCCGCGCCA GGGACATACT GGAGACAGGA AGTGGCTGAG AGGGGGAGAG 000160 000161 AGTTGGAGAG AGACGGCCGC GGAGGACACG GGGACGGGAA AGTCTGAGAG ACGGGGAGAG CCTGACCCGG CGGGACACAG 000240 000241 GCAGAAAGAA ACACGCGAGC CAGACAGACG CAGAAGAAAC GTGCCTGGTA CTGGATAGGA ACTTCATGGA ATGGAGCTAA 000320 000321 TGGGCCGTAG GGCAGGTTTG AGTCGTGCCA CCCTGGAGCA GAAGGTGGAG GGTAGGGATA AGGGGGTGGA GCACCTGATT 000400 000401 CCAATCTTGC CACAGGGAAG AAGAGTCTGT GAAGAAGTGC GTGATGACTG TGTGTCCCCC CCCACCCAGA AATTGGCATT 000480 000481 TGGGAGGGGT GGATATGGTT GGGACTGGGG AGCCTTGATC TTACTGCTCT TGGTTGAGTT GGTGTCCAAT AGACAGTTTC 000560 000561 AGAGGTTAGA GCAGTGGGAG TCACTGGGGA CTGGGGACAG GAGAGGTGGG GGTGGGGGAA GCCAGGCGGG AATGAGTAGG 000640 000641 GAGGCACTGG GAGGAGGGGA GAGGCAAGAG TTAGGGGAAT ACCGAGGAAA GTGGCAGGGA TTGGAGGCTC CTGGAGAAAG 000720 000721 GGCAAGGCTG AAGGTTGTCC CATGTATTTT GGCCAGATTT GATTATGTAA TCGAGAATCA TGAGATAATT AAGTGTGTTC 000800 000801 ATGTCTCTGG AGCCTTCAAC CAGCTCTTTT AACATCTTGC TCTTCCCAGC ATTCCTTAGG GTCTTTGGCT GGGCTCTGGG 000880 000881 ATGGATGCCA TGGGAGTACC TTTACTTAAG CTCTAAAGTT ACCAATGGAG AGACTGGGAC TCAAAGAGGA ACTTGATTGG 000960 000961 ACCCCAGAGA GGAGCAGATG TGTAGCTCTC TCACTTCC |
Predicted Small Protein
Name | NONHSAT028403_smProtein_800:955 |
Length | 52 |
Molecular weight | 5788.5627 |
Aromaticity | 0.176470588235 |
Instability index | 52.9941176471 |
Isoelectric point | 5.98577880859 |
Runs | 6 |
Runs residual | 0.0365948359542 |
Runs probability | 0.100630041807 |
Amino acid sequence | MSLEPSTSSFNILLFPAFLRVFGWALGWMPWEYLYLSSKVTNGETGTQRGT |
Secondary structure | LLLLLLLLLLLEEHHHHHHHHHHHHHLLLLLEEEEEEEEELLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii |