NONHSAT028707
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028707 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1048 nt |
Genomic location |
chr12+:56228593..56230024 |
Exon number |
2 |
Exons |
56228593..56229525,56229910..56230024 |
Genome context |
|
Sequence |
000001 CCAGGCCCCT CCTTACTCCC TCTCTGCCCT GTGTCCCTCC AGAGTTACTT CCAGAGTCTT CAAGAGTGCC AACTGGGACC 000080
000081 AGGACCCCAG ACCACAGCCC CCCACACCGT CCTGGACCTG GATTCTGACT GTGGTTCCAC TGTACCCCTC ACCTTAATCT 000160 000161 CTGGTTCTAA CCAGACCTGA GCCTAGACTT CCACTTTTTC CCTTACCCCT GTGAGGGCCT GGGAACACTA GGTGGGCAGG 000240 000241 GTTTGAGCCC ACAGGACCTG CACACAAACT TCCCCACCTC TTGGACTTGG GGACAGGATC TGTGCCTCAA CCCAGACCAG 000320 000321 CTTTGTAGGG ATATGTTCCA AGAACAGAGA AGAGTCTTAT GGGGAAGGGG GAGGAAGGGA AGTATGAATA TTTACCTCTG 000400 000401 ACCAATAATA GAGGTGCCCT GGTCCCCAAA GAAATTGACT CCCGAATTCC CTCCAAGCCT TACCCATATA GCttttgttt 000480 000481 gtttgtttgt tttcagacaa ggtcttgttc tgtccagtgc cgtggcgtga ccacagctca tgacaacttt gatttccccg 000560 000561 gcccaagcga gcctctcatt cagcctcctg agtggctggg accacagacg ccacacacag ctaattttta tgtattcgtt 000640 000641 tttatttttt tgcagagaca gggtctccct atgttgccca agctggtctt gaactcctgg gctcaagtga tcctcctgct 000720 000721 tcagcctccc aaagtgctag gattatagcc accgcaccTC GTCTTGAAAT AGCCTTTTAA ATGTTCACCT CAGCTTGCCT 000800 000801 CACAGTGGTA AAAATAAGCA TTTTTTTGTT TTGTAGGATC AGGGAGCTTC CAAGGCATTT GATACCTTTT TGATGGGAAG 000880 000881 AAGGGCTCTG AGGAGCTCCA AGATACCCCA ACCTCCAGGC CCTTCATTAG GGGGGTCTGT TCCTGGTTTC CCAGATGCAT 000960 000961 AAAGGAAGAC ATATCCCTCC CCTGGGCAGC AAGGCTACAA TGGGAGGGAG GGAGAACATG GGAGCATGTG AATAAAATGG 001040 001041 CATTAAAT |
Predicted Small Protein
Name | NONHSAT028707_smProtein_539:691 |
Length | 51 |
Molecular weight | 5844.7469 |
Aromaticity | 0.16 |
Instability index | 47.556 |
Isoelectric point | 8.68353271484 |
Runs | 10 |
Runs residual | 0.0353216374269 |
Runs probability | 0.0333333333334 |
Amino acid sequence | MTTLISPAQASLSFSLLSGWDHRRHTQLIFMYSFLFFCRDRVSLCCPSWS |
Secondary structure | LLEEELHHHHEEEEELLLLLLHHHHHHHHHHHHHHHHHLLLEEEELLLLL |
PRMN | - |
PiMo | - |