NONHSAT029172
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT029172 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3167 nt |
Genomic location |
chr12+:65277174..65371302 |
Exon number |
3 |
Exons |
65277174..65277645,65294357..65294478,65368351..65371302 |
Genome context |
|
Sequence |
000001 AATAAAATCT GGGAGCCCAA GCAGCATATT TGTGGGATTT GTCTGACAGA ACGCAATGGA AACAGAGCGT GGCATTCGCT 000080
000081 CCATCTCCCC CAGGTCACCT GTGGAGAAAG AAACATCATC TCTCAACAGA GGATTGTTCC TCCGTTTGAT GATACGTGCA 000160 000161 TCCTGCCATC TGGAATTCAA TTGACTGTTC TGTCTTGGAG CCAAGGATCT AGAAACTCTC CAATCCTGAA GTCAAAATGG 000240 000241 AATGCATCTC TGCTCTTCCT CTGGGCATCA TCTAATTTTT TTGTTCTTGT TTTCCTTGTG CTGGAATCTA CAACACCCTC 000320 000321 TCCTAGCCCC TCAACCAGCC TTTCTTCTGC AGAGCAACTT AGTTCTAATT AGCAACTACA AACCTATTCA CCTACATCCA 000400 000401 AGAGTTCAGT AGTGTCTTTT AAGTATGTAA CAGGCAATTC TTTTACATTT TATTGAGATG ACTACTTTAA AAAAATTGGT 000480 000481 TGCTACCCAG AACTGTTTAG AACATTGCTT GCTTTAGGTA AGTGAGTGAA GCAAGATGTG ATAACATAGG GCTGGGGGAC 000560 000561 TAGAGTTGGG TAATATGGTA GCACATGATT TTGTTACTTG AGATTGCCTG TAATTGTAGA CATCAGTGAG CAGGGTGATA 000640 000641 TGAACCTCAC AGGGGCTCTT GAAGTTCTGC TTCTTCCCTA TTCCTTAATG CAATACAATA TTTAGGTTCA TCTTTTCAAT 000720 000721 TTTCCTGGAG AAATTAAATA CTGTGCCATA ATAAAAAAAT AAGTAATTTG AAAGTAAAGG AAGGGCATGA ATGGAGAGAA 000800 000801 GGCAGGAAAA CATTCTAGGT TGGAAAAAAT GGCAGAAGTA ATGTTGGGAC ATTGGAGTGA TGGTGGAGGT GGGAATAGAG 000880 000881 TCTAGGATCT CTTCATCCCA TACTATGCAT CTATCTTCAC AAAATTAGTA TGGCCAAATA TTAAATCAGC TCATTTCTGG 000960 000961 TTGGGAAAAG TAGGGTGAAT GTGCCTTTCT AGCTGTCCTT GAGATGTAAA TCTCCTGTAA CATAGCTTCC CTAGTGGTCA 001040 001041 CCTCAAAGGC TTTGTTCTCT CCAGGATAGA TGCTACAGAG TGGGACAGTA CTTGGTGTGT GTGTATCTCA ATTTTTTTTT 001120 001121 TTTTAACATG ACAAATTGAA CTAGGGGCAA GAGAAGGATA GACAGAGGAG CCTATGATGG GGTGGTGGAT ACTAAATATT 001200 001201 TTCCAGGTGT AAGGAGCAGA GGAGGAAAAG GGAGACTGGG TAACCCTTTT TCAGACCATC ATTTAGTCCA TTTTATGTTG 001280 001281 CAAATATTAG CAAACCTACT CCAGCTTTCT TAAACAGTAG GGTTTTCATT ACAACATAGT TAAGAGAGTA GGCTTAGGAG 001360 001361 TAAGATTGCT TGATCCTGAG TAAGTTACTT AATCTTGGTG TCTCAGTTTC TTCATTCCAG TTAAGTAAAT ATATTTAAAT 001440 001441 TAAATTATAT TAGTTAGTAA ATGTAAAGCA CACAGAAAAG TGTTTGGCTT CTGGTGAGCT TTCAATAAGT GTTAACTATT 001520 001521 ATTTGTTATT ATTATTTTAA CAAAACCAAC CTCCAAAACC TATGAAGTCA GTTTACAGAA AGCCACCAGG AAAAGGGAAA 001600 001601 TAAGAAGATT CTTCACTTTG CTGTCATTTG ATACACTTAG CATTTTAAAT GACTATATGT ACAATATTAA CCATGCCTTT 001680 001681 CCACAAAACT ATGTGTGTGC ATATGAATTA CAGGGCTTTC ATTTGAAACT GAACTATCTG TGTTTGTAGT CACTTTAATC 001760 001761 ATACAACAAA CCTACAAAAT ATTTAAGCAT AAATTATCAT GATGACTAAA TATGGGAAAG CTTCTGTTAC CAAAACCTGC 001840 001841 ACCCAAATTG ACTGCACAGG ATGGGTGATT GGATGGTGGT GTAAAGAATG CTCATGAGGA CTAGGCTGCT GCTAATTAGA 001920 001921 TCTTCTATGC TATTTAAATG TTCTCCAAAC TTCAGGGAGT GCCCTGAAGG CAGTTGGACA TTAGCCTTGT GGTTTTTGAG 002000 002001 GGTAACCTAC AGTTTGTCAG CACAGGGGTG GAGGTGAGCA CCATGGGACT TTTCCCAGGC TGCTGGTTAA CATACTGTGG 002080 002081 TTTCAATCCT TTAAGCCAAT AAATGGAGGA GAGAGAAAGA AGGCAGACTG AAATTAGAGG AAAAGAGACA AAGAAAGGAA 002160 002161 AAGTGGAAGT AAGAATAATA TTCATGAAAT GTCTTCTTTG GGCCAGATAT TTTTTTAGGA ACTTTCACAT ATTGTGCTTA 002240 002241 CATCAACTCT GTGGGAAATG TATGATTATA CTATCCTCAT TTGTAACAGA CATTGTTGGG TGCCTATATA ACATATAACA 002320 002321 GCTATTTTTC TTCATTTTTT TCTTGCTGAT GGCGCCTTTT TTTTTTTAGT GTTTACTTCC CATACAAAAC TTATGTCTCC 002400 002401 ATGTCTCCAT CCTTCAGCAA TAGGGGTAAT TCTGAAAGGT CATTGTTTTG CAATTGCCCT TGAAAGGAAA TTCTTGGACA 002480 002481 TAACAACAGA TAAGATTCTA GCCAATGAAA GGTGATGAGA AGGTTGCTGA GAAGTTTCTG AGAAAGGTTT CTTTATTCTT 002560 002561 TAACAAATAC CCTGGAAAGA GACAGGCCTT CTGCTGCTGT TCATGGTTGT ACCTGCACAG GATGCCTGAA AAGGAGTAAC 002640 002641 CGTGGGGTCA GAAGAGGAGC CAGCGTGAGG ACAAAGCAGA TACACTGAAG TACCACCTGT CACTGAATTT TTGTGCAAGA 002720 002721 GTATAAACAT TCTCATTGTT TAATCTTTCT GTGGGAGACG CTTTACTATG TGTAGCAAAG TCATTCTAAC TGACATACCA 002800 002801 TTTTCCATTG TATGAGAAAA CTGATGTACA GAAAGGTTAA GAAACTTGCC TGCATTTGCA TGCATAATGA GGAGTGGAGA 002880 002881 GAACAGGTTG TGCCTTCTAA TATACAGGCA AGATATGTCT CTTTTAAACA GCACATACAG ACACACTCCA AAATGACAAT 002960 002961 TTCCATCATT TTTTAAAAAT TAAATGAGAC AAAGACTCTA AAACTATTTA AATAACATGT ACATTACTGT CTTGGGATTT 003040 003041 ATTTTTGTTT CAGCTCTATT GAGATATAGT TGACAAATAA AATGGTATGA ATTTAAGGTG TACAATGTGA TGATTTGATG 003120 003121 TATGTATATA TTGTGAAAAG ACCAAAATAA AGTCAGTTAA CATATCT |
Predicted Small Protein
Name | NONHSAT029172_smProtein_2102:2317 |
Length | 72 |
Molecular weight | 8557.2278 |
Aromaticity | 0.112676056338 |
Instability index | 52.9169014085 |
Isoelectric point | 9.36334228516 |
Runs | 12 |
Runs residual | 0.0204595997035 |
Runs probability | 0.0555555555555 |
Amino acid sequence | MEERERRQTEIRGKETKKGKVEVRIIFMKCLLWARYFFRNFHILCLHQLCGKCMIILSSF VTDIVGCLYNI |
Secondary structure | LLHHHHHHHHHLLEELLLLLEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHLLLEEEELLL LHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHH HLLLLLLLLLL |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTT Toooooooooo |