NONHSAT029679
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT029679 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1297 nt |
Genomic location |
chr12+:81156933..81164496 |
Exon number |
3 |
Exons |
81156933..81157007,81160529..81160599,81163383..81164496 |
Genome context |
|
Sequence |
000001 GCGGAACATG TGTTAAGAGG AAGAGAGGAG CAAGCATATA TATATGGCAC TCCAGGAAGA TGAAGGTGGG ATTATAGAAG 000080
000081 TGCTGTTAGT ACCAGGGACA CTGGACAAGA AAGATAAGCA AGCCACTGCT GTCTGATTCC TACATAGCAG GTTAAAGTGT 000160 000161 TGGATTCATA ATTCTCACTT CAGGAAGACT GAAAACCAGA CTTTATTCTG TTAGATCCCA AGATATCAAG GAAGAGGAAA 000240 000241 AGGGAAGAGC CCCAGGCACT ATTAAACCAC AGCTACAATC ACTGCCATTT GAAACTTCCC ACCAAACAAC TTTACTATTC 000320 000321 TGATTTAATT TCAACTCCCA GGGAGAGTTA GTATTAAGAG GAAGTACCTA TCATCCATGA TAATCCACCA GCTCTGGGGG 000400 000401 TTTAGAAGGG AAAGGATGGA GGTCTCAGTG CTTGAGGCTA GGCTGACAGC TGAGCAGGGC TCCAGCTCAC CTTAATCTCA 000480 000481 CTCCTGTGGA TGCCTGCACT AGGGGCCTGA GCATTCTCCC AGATCTCTGC ATAGGAGGCT GCCCTTAGGC ATTATTAAGG 000560 000561 TGTGAAAGCA GCAAGAAAGA GCAGAATTAA ACTGCTTTTC TCTAATGTAT CCTTTTACAG CCCAGTGTAT TTTGCCCTAG 000640 000641 GCTAGCCTTT TCTTCTCCTT TCACCCTCCA CATGCCAGTC CGAGACAGCC TTTCTTCTCA CAGGAATTAT TGTATTATTT 000720 000721 CTTAAATTCT TTTTTTCTTC TCCATGGCTT TTCTAGAGGA AACCTAACAG TGTGGGTTTA TCAACCATTT TGACAAGACT 000800 000801 CTGAATTCCA CTGAACAGAT TTTTGAATAA AAATTATGAA CAAAGAAAGT GTAGTAAATC TGCTAATAGA AAAACTGACT 000880 000881 ATGCCTTGTG GGAAAATTTT TGTGTGTGTG ACATTCCATC GTGTACCTGC CAGAGAAGAA AACAATTGGG CCTGTTACTC 000960 000961 AAATTGTTCA ATTTTTAAGC GGGTCCATTG TTATGATTGG ACTTTATTCC AATATAAGCA CTTGCAAAAG GATGACATAA 001040 001041 AGTGAGAATA TAATAGAATG ATTATATGTA ATGAGTTTAC TGAAGAACTT CTACATCTTG GAGTACAAAC AATGTTTTGG 001120 001121 ATTTTTTTGT TTGTTTGTTT TTCTCCCATC ATTTTCGGCA GTGTTTTCTT GCATTTCTCC TTGCAAGCCT TTTAAACAAT 001200 001201 ATCATCTACA ATTTTCTGCT TGCTTATGAT TATCAAAATT AAACCCAATT CTATTTATTT AAAAAAAAAA AAAAAAAAAA 001280 001281 AAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT029679_smProtein_1070:1228 |
Length | 53 |
Molecular weight | 6133.313 |
Aromaticity | 0.25 |
Instability index | 72.9905769231 |
Isoelectric point | 8.70538330078 |
Runs | 12 |
Runs residual | 0.0803998261625 |
Runs probability | 0.0719616675501 |
Amino acid sequence | MSLLKNFYILEYKQCFGFFCLFVFLPSFSAVFSCISPCKPFKQYHLQFSACL |
Secondary structure | LLHHHHHEEHHHHHHLLEEEEEEELLLLLLEEEEELLLLLHHHHHEELLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooooooooooooooo |