NONHSAT029887

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT029887

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2274 nt

Genomic location

chr12+:92815307..92824778

Exon number

2

Exons

92815307..92815611,92822810..92824778

Genome context

Sequence
000001 ATTTGAATTG GTGAACTTAG TAAAGCAGAC GGCTCTCACC AATAAGGGCA GGCATCATCC AATCTGTCGA AAGCTTGAAT 000080
000081 AAAACAAAAA GAGGAAGGGA AAATTTGCTT CTTTTCTTCT TGATCTAGTA TATCATCTTC TCCTGCCCTT GGATGTGAGT 000160
000161 GGGCCTTCAG ACTTAAACCA GGAGTTACAC CTTTGGCTTC CCTGGTTCTC AGTTCTTTGG ACTTGGACTG AATTACACTG 000240
000241 CCAGGTTTCC TGGTTCTCCA GCTTGCAGAT GGCAGATCAT GGGACTTCTT GGCCTCCATA ATTGTTTTCA TATCTCCAGG 000320
000321 CCTTTCATTG GGTCAGGTTG GCATTTCGCT GCCCTTTATG TGTGTGACAA GTGAAAATAA GGAAAGAAAA AAACTCAAGT 000400
000401 GAAGAAAATC AGAATCTGCG CAGCAGTTCC TGGGCGTTTC AGCTGCTTCC CACATCACCT GCCTCATCAA GCCCCAGCAT 000480
000481 CCATCTCCTT GCTCATCTTA CACCCTGTGT GCATGACAGG CCCACCATTC ATTTATCAGA GCAAAGGCTC TCCCACTATT 000560
000561 CTGGTTCACC CCCCTACTTA GCCAGATATA CAAGAATATC TGCACGGATG ACCTGCCTCA CCTGGGAGCT CAGAGGAGCT 000640
000641 CAGATTCCAT TACTATCGCA CCAAGGACAG ATCTCCCAGC AAGAATGACA GAAAAGACTA ACTGCCCCCA AAATCTCCCT 000720
000721 TCCAAAACAC AGTTCTCTTA ATTCTCCCAA GAAACCAGAA TGTGACTGCT CACCTCTCTA AGGACCTGAA AACAACTGGC 000800
000801 CATTTCAGCT ATTTAAATCA ACTTTAAAAA ATCCAACCGC CAAAATATTA AACCATTTTG GTTGGAATGA TAACATAACT 000880
000881 AACCTGCTGA CAGCTGCTTC TGCTAGGTGC AAAAATGGAA AAAAAAATAC TTCTAATCAG GTCAAATCAC TCTACCTTTG 000960
000961 GGATTCTAAA TTTACTCATA TTCTCAAAGA AATATATTCA GTCATAGTGG GGAAAATAGG ATTATTCCTT TAGCTCGATA 001040
001041 AGCAACCAGA AGTTCTTCCT TCAAATCTTG ACATTTAATC AATCAGAAAT TGATTTTTGG AAAACTGTTT CCTATGAAGC 001120
001121 TATCTCTGCC TGAAGGATTT TTCTTTTACA ATCCAGACTA TAGAAGGAAA TTCACAACCT GGACTTTCAC CTCCATTGGT 001200
001201 CAGAGTTTTA CTGACCAATT CCCACCTCTG CCTTACACCT AACGGAAGTT TATGCCTGTT TTCTCTTCAC ATACCCCAAC 001280
001281 AGTTACAAAT GGTTGTTATT ATTAAGCATC TTTTATTTTG TGGCCTCTGA TTACATGGTC CCCTAAATTT TGACCTAATC 001360
001361 ACAAAAGATT GGTAAAATTT CTTAACATAT TAATAATATT TTGTTTATGT GTCAATATCT TAGCATGTAT CAATTAAGAC 001440
001441 AGAGGTCTTA ACGTTCTCTT TTTGAAAGAG AATATTAGGA TTCAGAGATA TTAAGAGATT CTCCCAGGAT CACAGTTAGG 001520
001521 TAACAGAGCT GGATTTTAGT CCAGGTCTGT CTACAGCTCT AACGTATATA CACCCTTTGT ATAACATGTC ACGAATTCAG 001600
001601 CATAAAGGGA TCTTCAGTGA TCTAAGTCAG GGGTCAGCAA CCTTTTCTAA AAAGGACCAA ATAGTAATAT TTCAGGCTTT 001680
001681 GTGGACCCTA TGGTCTCTAT CATAACTGTT CAAATCACCA TGTAGTGTAA AAGGAGCCAT AAGCAAAATA TAAACTAACG 001760
001761 AATGTGGCTG TTTTATGGGA TTTTTTTTTA ACTCTTTATT TACAAAAGCA GGTGGCAGAT CAGAACTCAC TTATGGGCCA 001840
001841 TAGTTCTCTG ACCCCTGACC TGAGAAAATC TTATATTTAT GGACAACATT TAGACTGTGA CTTGCCAAGT AAGAACAAGA 001920
001921 AGCTCTGTCA ACTGAAGGTC AAGGCTGGAG TTCTGAAAGC AAAGAGCTGT CTGGTGTTAA TGATAAGTGA AATAGTTAAA 002000
002001 GTTAGAAGAT CCCAGTTATA AGAAGCACAA AGAATAATGA CCATAGACTC CTGAACAAGA ATGTCTGGAC TTCTGGCTTA 002080
002081 GGCACTCTTG TTGTATGGTC CAGGCCAAGT TACCTAATCT CTCCAGGCCT CCATTTTCTT ATCATTAAAT GAAGATAATA 002160
002161 AAAGTATTTT CCTCAGAGAG CTGTAAGAAT AAACTGAGCT AACCCATGTC AAGCACATAG AATAGGGCCC AGCCTATATT 002240
002241 AATTTATCAA TAAATGCCAG CTACATATTA GTTC
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Predicted Small Protein

Name NONHSAT029887_smProtein_1832:2020
Length 63
Molecular weight 6970.3241
Aromaticity 0.0322580645161
Instability index 50.2532258065
Isoelectric point 9.82000732422
Runs 12
Runs residual 0.0399078341014
Runs probability 0.0492256962846
Amino acid sequence MGHSSLTPDLRKSYIYGQHLDCDLPSKNKKLCQLKVKAGVLKAKSCLVLMISEIVKVRRS
QL
Secondary structure LLLLLLLLLHHHHHEELLLLLLLLLLLLHHHHHEEELLLEEELLLEEEEHHHHHHHHHHH
LL
PRMN -
PiMo -