NONHSAT029887
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT029887 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2274 nt |
Genomic location |
chr12+:92815307..92824778 |
Exon number |
2 |
Exons |
92815307..92815611,92822810..92824778 |
Genome context |
|
Sequence |
000001 ATTTGAATTG GTGAACTTAG TAAAGCAGAC GGCTCTCACC AATAAGGGCA GGCATCATCC AATCTGTCGA AAGCTTGAAT 000080
000081 AAAACAAAAA GAGGAAGGGA AAATTTGCTT CTTTTCTTCT TGATCTAGTA TATCATCTTC TCCTGCCCTT GGATGTGAGT 000160 000161 GGGCCTTCAG ACTTAAACCA GGAGTTACAC CTTTGGCTTC CCTGGTTCTC AGTTCTTTGG ACTTGGACTG AATTACACTG 000240 000241 CCAGGTTTCC TGGTTCTCCA GCTTGCAGAT GGCAGATCAT GGGACTTCTT GGCCTCCATA ATTGTTTTCA TATCTCCAGG 000320 000321 CCTTTCATTG GGTCAGGTTG GCATTTCGCT GCCCTTTATG TGTGTGACAA GTGAAAATAA GGAAAGAAAA AAACTCAAGT 000400 000401 GAAGAAAATC AGAATCTGCG CAGCAGTTCC TGGGCGTTTC AGCTGCTTCC CACATCACCT GCCTCATCAA GCCCCAGCAT 000480 000481 CCATCTCCTT GCTCATCTTA CACCCTGTGT GCATGACAGG CCCACCATTC ATTTATCAGA GCAAAGGCTC TCCCACTATT 000560 000561 CTGGTTCACC CCCCTACTTA GCCAGATATA CAAGAATATC TGCACGGATG ACCTGCCTCA CCTGGGAGCT CAGAGGAGCT 000640 000641 CAGATTCCAT TACTATCGCA CCAAGGACAG ATCTCCCAGC AAGAATGACA GAAAAGACTA ACTGCCCCCA AAATCTCCCT 000720 000721 TCCAAAACAC AGTTCTCTTA ATTCTCCCAA GAAACCAGAA TGTGACTGCT CACCTCTCTA AGGACCTGAA AACAACTGGC 000800 000801 CATTTCAGCT ATTTAAATCA ACTTTAAAAA ATCCAACCGC CAAAATATTA AACCATTTTG GTTGGAATGA TAACATAACT 000880 000881 AACCTGCTGA CAGCTGCTTC TGCTAGGTGC AAAAATGGAA AAAAAAATAC TTCTAATCAG GTCAAATCAC TCTACCTTTG 000960 000961 GGATTCTAAA TTTACTCATA TTCTCAAAGA AATATATTCA GTCATAGTGG GGAAAATAGG ATTATTCCTT TAGCTCGATA 001040 001041 AGCAACCAGA AGTTCTTCCT TCAAATCTTG ACATTTAATC AATCAGAAAT TGATTTTTGG AAAACTGTTT CCTATGAAGC 001120 001121 TATCTCTGCC TGAAGGATTT TTCTTTTACA ATCCAGACTA TAGAAGGAAA TTCACAACCT GGACTTTCAC CTCCATTGGT 001200 001201 CAGAGTTTTA CTGACCAATT CCCACCTCTG CCTTACACCT AACGGAAGTT TATGCCTGTT TTCTCTTCAC ATACCCCAAC 001280 001281 AGTTACAAAT GGTTGTTATT ATTAAGCATC TTTTATTTTG TGGCCTCTGA TTACATGGTC CCCTAAATTT TGACCTAATC 001360 001361 ACAAAAGATT GGTAAAATTT CTTAACATAT TAATAATATT TTGTTTATGT GTCAATATCT TAGCATGTAT CAATTAAGAC 001440 001441 AGAGGTCTTA ACGTTCTCTT TTTGAAAGAG AATATTAGGA TTCAGAGATA TTAAGAGATT CTCCCAGGAT CACAGTTAGG 001520 001521 TAACAGAGCT GGATTTTAGT CCAGGTCTGT CTACAGCTCT AACGTATATA CACCCTTTGT ATAACATGTC ACGAATTCAG 001600 001601 CATAAAGGGA TCTTCAGTGA TCTAAGTCAG GGGTCAGCAA CCTTTTCTAA AAAGGACCAA ATAGTAATAT TTCAGGCTTT 001680 001681 GTGGACCCTA TGGTCTCTAT CATAACTGTT CAAATCACCA TGTAGTGTAA AAGGAGCCAT AAGCAAAATA TAAACTAACG 001760 001761 AATGTGGCTG TTTTATGGGA TTTTTTTTTA ACTCTTTATT TACAAAAGCA GGTGGCAGAT CAGAACTCAC TTATGGGCCA 001840 001841 TAGTTCTCTG ACCCCTGACC TGAGAAAATC TTATATTTAT GGACAACATT TAGACTGTGA CTTGCCAAGT AAGAACAAGA 001920 001921 AGCTCTGTCA ACTGAAGGTC AAGGCTGGAG TTCTGAAAGC AAAGAGCTGT CTGGTGTTAA TGATAAGTGA AATAGTTAAA 002000 002001 GTTAGAAGAT CCCAGTTATA AGAAGCACAA AGAATAATGA CCATAGACTC CTGAACAAGA ATGTCTGGAC TTCTGGCTTA 002080 002081 GGCACTCTTG TTGTATGGTC CAGGCCAAGT TACCTAATCT CTCCAGGCCT CCATTTTCTT ATCATTAAAT GAAGATAATA 002160 002161 AAAGTATTTT CCTCAGAGAG CTGTAAGAAT AAACTGAGCT AACCCATGTC AAGCACATAG AATAGGGCCC AGCCTATATT 002240 002241 AATTTATCAA TAAATGCCAG CTACATATTA GTTC |
Predicted Small Protein
Name | NONHSAT029887_smProtein_1832:2020 |
Length | 63 |
Molecular weight | 6970.3241 |
Aromaticity | 0.0322580645161 |
Instability index | 50.2532258065 |
Isoelectric point | 9.82000732422 |
Runs | 12 |
Runs residual | 0.0399078341014 |
Runs probability | 0.0492256962846 |
Amino acid sequence | MGHSSLTPDLRKSYIYGQHLDCDLPSKNKKLCQLKVKAGVLKAKSCLVLMISEIVKVRRS QL |
Secondary structure | LLLLLLLLLHHHHHEELLLLLLLLLLLLHHHHHEEELLLEEELLLEEEEHHHHHHHHHHH LL |
PRMN | - |
PiMo | - |