NONHSAT029960
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT029960 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2639 nt |
Genomic location |
chr12-:93970040..93980606 |
Exon number |
5 |
Exons |
93970040..93970521,93972456..93972863,93976842..93977534,93979518..93980064,93980097..93980606 |
Genome context |
|
Sequence |
000001 GATGCTCAGT AAATATTTAT TGAATGAGTG AGTGAATGAA TGATTGAAAA AATGAATAAC TAAATGAAGG AAATAAATAT 000080
000081 AAAGACAGAG AAGTTAAAGA TAATGCAAAG TTTCAATCTG GGTTAGAGTA GAAAAACTGA AATGAAAAAA AACTGAACGA 000160 000161 AGGAAAAAAC TGAATTGTGT TCAGTAGAGT TGTAAATTAA GTACATTTTT CATGAATGTA GTAGAGCATA ACTGTCCATT 000240 000241 AAAACCCAGC ATTTATTCTG GTATTTTCGT TATACAGAAA TTTGCTACAG AAAAAGGCCT CATCCTAGAA AGAGGTTGCA 000320 000321 TTCTAAAGCA GGGTTTGCAA ACCAGTTGTC TGGAATTTAC AATAGAATTT TCCTCAGAAG TAAATTAAAA TTGGTGATTA 000400 000401 GGTACCCAAT TTATCACACA AAAGTCCATT TACTCTCTAA TGTGCCTGAA AAGCTTCAAG TCTGATTAAA AACTGGTAGA 000480 000481 AAATAATACC ATTTAATATT ATTGAAATAT TGAATGTGAA CATAATTTAT TTATCTTGAA TATTGACACT GGAGAAAAGA 000560 000561 CAGATTTAAT TTTAGCAAGT GAGAAAACCC AAGAGATGTT TGTGAAGATC AGAAGAACTT CCGGTCATTC AGAAACTTTT 000640 000641 TGAGGTTAGT AGCCCTAACT CTTTAATATG GTCAGTCCTC TGTACCCGTG GGTTTCCCAT CCACGGATCC AACCAACCAC 000720 000721 AGAACGAAAA TATTTGGGGG AGGGAAAAAA AAGCAATAAA AAATAACAAT ACAATACTAA TAAATAATAC AAACCTTTAA 000800 000801 AATATAGTAT AACAACTATT TACATAGTAT TTACATGTAT CAGGTATTAT TAAGTAATTT AGAGATGATT TAAGGTATAT 000880 000881 GTGAGGGTGT ATGCCGGTTA TATGCAAATA CTATACCGTT TCATATAAGA GATTTAAGCA TCTTCAGATT TTGGTATCCT 000960 000961 TGGCAGGGCT TTTGAGGGGG CAGGGGCGGG AGTCCTGGGA TCAATCCCTG AAGATACTGA GGGATGAATT ATGTATATTT 001040 001041 CACTTCAAGG CTTGAGACAG TCTTCTGGAA GCCCAAGAGT TGGTCTGTTA TAGAATGGTT GCCTGTCACG CCTTGGACGT 001120 001121 AATAAAACCC ATGGCCTGCC CAACGCAGCT TCAAACTGGA TATCTGGGGG ACTTTCAGCC ATTACCCAGG CTCAATGATG 001200 001201 CACCTCTGCT TGAGACATCT GATTACCCCA ACCCTCCTCC TTGACTATCA AGACCAGAGA TGTGCCCCAC TTTAAGAGAG 001280 001281 ATCCAGGAAA ACCCAAATGT GCAAGATGGA TAGATTAGGG CCGGATCATT CATGCACCAA GATTCTTTTA ATTTTACCAA 001360 001361 AGAATCTAAG AATTTCCTTA GTATATTATA GCTTTTTTGT TTCCTTTACT TTTTTCTTAA TTGCCTGACA GATGAAAATA 001440 001441 AAGCTCAATG GCACTCTTAT CTATTGAGGA TCAATTGGAA ATAAGAATAA TCTACGTAAA TGGGAAAAAT GACTTGCAAA 001520 001521 AACACACCCT ATGCCCATCA TCTTCTGGGA ACACATCTGT TTGTTAGCTG GGAAGCAGAG CGAAGACAGC CTTCCAGATC 001600 001601 CCTTGATAAT GAAAATTCAT CCAAAGGGTT ATGATGATGA TGATGATGGC TGGCATACAC CAGATTCCTG TTTCTCCATG 001680 001681 ACAACCAACA TCTAAAACCC AACTCAAAAC TCTTCGATCA TAGGGTAATG TTCAAAGATC CATAGCTAAA TCAAACAGCA 001760 001761 TGGATGGGAG GTTTTGGATT TTAAAACAGC AAACAGATTA GAAATGTTAA GGAGTTAAAA TCAACAAAAA ACTAATGTGG 001840 001841 ATCAAGACAT CATGAAATCC AGCAGAGGCA GATTTTTCAG AATCGGGTAG AGGAGGCCAA GAACTGTAAT TATCCCACAG 001920 001921 GGTATTCCAC AGGCCTGGCT TCTGAATCCC AGCGGAAGAA ATATATGATG TTAAGAGAAC TGTAGGACTT GCAGGAAAGC 002000 002001 AAAGAAGAGT CTCGGCAATT TTATCAAAGG GTAGGAGCGT GCAACTTTTA CAAATAGTAA TCCTAAGACT AAAATATCTG 002080 002081 CGTTTGAATC CTGACTCTGT CATTGATTGG CTGGGTTGTG TGCCTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGCGATCC 002160 002161 AGTAAGCAGG TTTTATTACA ATTTATAACT GAATTTTCTC ATTCACACAG GGTCCACCTT TATGGTGACA CACCACAGGA 002240 002241 TTGTAGCTAT GCAGGAAAAT TTTAAAGCCA TAAAATAAAT AATGTCTGGA CTCTAGAAAA GATGGTACAT TTATAACAGT 002320 002321 TATGCAGACT AACATAGCAA AAAATAAGTG GCCACAAAAC TTTGTATTTT TCTTTAGTAT TATGCCTACT CAACTTGTAA 002400 002401 AAGACTGGCC ATGTCATAAT GTTTGTAGTT TCTAAACCAT GTTTTTGGAA ACACAGAGGA CATCAGTGTT ATGCCTATTC 002480 002481 AAATTATAAA AGACCCGGCC ACTTGACAAT GCCTGTAGTT TCTAAACCAT GCTTTCCAAA TTGCAAAGGG GGCAGGTACA 002560 002561 GCCCATAACT TTACAGAATG GCAAGTAATG TTCTACCTTT TGTTGAATAA TTGGCTTATT TCACTTGACG TAAGTTTTT |
Predicted Small Protein
Name | NONHSAT029960_smProtein_890:1054 |
Length | 55 |
Molecular weight | 6400.5435 |
Aromaticity | 0.12962962963 |
Instability index | 48.0722222222 |
Isoelectric point | 9.62420654297 |
Runs | 8 |
Runs residual | 0.0145438121048 |
Runs probability | 0.0198396926338 |
Amino acid sequence | MPVICKYYTVSYKRFKHLQILVSLAGLLRGQGRESWDQSLKILRDELCIFHFKA |
Secondary structure | LLEEEEEEEELHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHEEEL |
PRMN | - |
PiMo | - |