NONHSAT030092
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT030092 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5428 nt |
Genomic location |
chr12+:97858900..97958747 |
Exon number |
16 |
Exons |
97858900..97859505,97882688..97883176,97886239..97886386,97886955..97887065,97887653..97887780,97888473..97888659,97889709..97889834,97900781..97900992,97912490..97912728,97913470..97914206,97916967..97917758,97917993..97918206,97924432..97924637,97954315..97954476,97954575..97954825,97957927..97958747 |
Genome context |
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Sequence |
000001 CGGCAGGCTC TCTCCAAATG CCTGGATTCT GCTGGGGGAG TAAGAAGTCA GGAGTAGTTT GTCTGATGGT ATTGGGATCT 000080
000081 GCTTTGCAAT TGCCAAGCGC TAAGGCACAA GCTGGCAGAT GTGCTGCGGC TCTGCTACGG GCGGCTCTGT CGCCTTCAGT 000160 000161 CGCAGGCTGG TTCTTTGGGG GAAAGTTGTA TCCAATATTG GTGACTCCCG GGAATAGTCT GTTTGTGTGC TACTTAATGG 000240 000241 TCTCTAGGCT TCCTTGTCTT GTAGAACCTT GTTAGAAAGG AGCCTTGGTG ATTAAGAGGC TATGGAGTAC ACAGCCTTGC 000320 000321 TTAGCAGATG AGCCCTTATC CATTTCCCGT TTCCTTAAAA ACGGCTAATT GATGGATGCT GCAGAAAACA TGCACTCTGC 000400 000401 TAATAAGATG CTGATGACAA AATAGGTATC AGGAAAGGCA TTTACTGCTT ATGAGCACCA TCAGCTTTCT TTCGAGTGAG 000480 000481 ATTGTGGCTT TGTAGTAAAG TTTTTTTTTA AGTAATATGC TAATAGTTTT ATTCTAAATC GGCCAGCGCT GAATATCTTC 000560 000561 AGGAAAATGG GTTCCATGAG AAGTGACATC CTCCTCGAAT CAAAAGAAGA GTTGGGACTT AAACATAAGC CTATAAGCAC 000640 000641 TCAGATTATT GAGAAGTATG CATAAAAAAT GGACAAGCTG AAGATATGGA CAATTTTACT GATGTTTAAT TGCACAATTG 000720 000721 TTAAAATTGC ATCACTGCCA TCGAGGTCAA TTTGACTTAA GTAACTCTGT TTAGAAATAT GAATTATGAT ATAAAAACAA 000800 000801 TTAAGCAAGC AATACTTTTA TGTTATTTAA AACCTTGCTG TATAGGAAAA GCTACTTTTA GGCCAGGCAC AATGGCTCAC 000880 000881 ACCTGTAATC CCGGCACTTT GGGAAGCTGA GGTGGGAAGA TCGCTTGAGC TCAGGAGTTT GAGAGCAGCC TGGGCAACAT 000960 000961 AGCGAGACCT CATCTCTACT AAAAATACAA AAAATTAGTC AGGCATGGTG TCGTGCACCT GTAGTCCCAG CTGCTTGGGA 001040 001041 GGCTGAGGCA GGAGGATCAC TTGAGCCCAG GAGATTAAGG CTGCAGTGAG CTGTGATTCT CAGGATGATG GAGTGAGTGA 001120 001121 TGGAATAGGT TGCCAACTGT AGTTACTCCA CTCAGCACAG AATGGCTGCG GGGAAATATA ATCAGACATG CCCAAAGAAG 001200 001201 TCTGCTTAGG GTGAAACAAA TACCTTTGAG GTTTAAATCA GGTAAAGGAA GGAGAGACTG TTTCTACAGG TGTCATACAA 001280 001281 AAATCAATAC TGAGCCAAGG ATTATTGGAT CCCATAGAAC CACGGAGACT TGGTAGTGAA ATTCTTCCAA AGGTCATTCC 001360 001361 ATCCGTGCAG GCAGATGGTG TTCCTAGGTT TGGAAATATA AATCCCATGG GAAGTCAGCT GAAGACCATT TTATGCATCA 001440 001441 CTCATCCTGT TAGAGCCCTG TGCTGTTCTG TCTCTCTATA AGACTGGCTG AAACCACCAC GGTTGTTTAC AATTTATGCT 001520 001521 CTAACTTTGG ATCACCTAGT TAATACTCTA ACTCCGATTA TTACCAAAGA CAATGTTCTA TAAAAGATAT TGTCTATTAG 001600 001601 AAGGATGCTT CTGCATTATT AATAAAATCA CAGGGAAAAT GCAACATTTT GGATGTCACA TCTGATAAGT TGGCAGTTAA 001680 001681 AGAACAGAAA CAGCAATAAG ACTGCGTGGC TACATTTTCC CAGTGCCACC AACTGGGATT TAAGCTGACT AACATTTTGA 001760 001761 AAGCCCAGCC CATTTCATTC ACAGCAGGAT GGCAGGAAGA TAACACCTGC AAAAGTATGC CACAGTTATG TTGGGAATTT 001840 001841 CAATATGATG GAGCTCTGAG TGTACATGTA TGTGAGGAAA AGGAGGTAAA CAAGGAGTTA GAAAGATGTG ATGAGACCAG 001920 001921 GTGGTGATGG ACTGAATATA AAGCAAAGAC ATCTGGATTT TTAATTCTGT AGGGAATAGC TGACCAAGGT ATATGATTAC 002000 002001 ATGTCTGACC AATTCCCTCC TCTCTACTTC TGTCTTTACC TTATCAAGTC CTAAGTCAAA TCCAACCTTT TGCATTTTTT 002080 002081 AGAAAAAAGG TCTCGTTCTG TTTGTTGTCC AGGCTGGAGT GCAGTGGTGC AATCATGGCT CACTGCATTC TCAAACTCTG 002160 002161 GGCTCAAGGA TCCTCCTGCC TCAGCTTCCA GAGTAGCTGA GACTACAGGC ACCTGCCACC ATGTTCAGCT AATTAAAAAA 002240 002241 AAAAAAAACT TTTTTGTGAG GTCATTAGAA TAAATACAAC ATTTCTCACA GGCACAGAAT CCTAAGTGCC TGTGCTATCT 002320 002321 TCTTACTATA GTTATAGAAC CAGCTTATAT AATTTGGTTT TGCTTTAAGT ATAATGTGGC AATGTGTTCA TAAAAATTGA 002400 002401 AATACACTTC ATGCTACTAA AAATGATAAT TTTCTGAGAA TGGAAAACAA GACTAGCATG TATTTACCAA TGTTATTCAA 002480 002481 GATTGTCTCA AGAAAAGCAT TATTCATTTG GAAAAAATAA TTGATCACGA GGTAGGCACA CTGAAATACT GTTTTAAGGA 002560 002561 ACAGGAAATT TTGCACTATC TACTTCTCTT ATTTTGAAAG TTCAAGCGCT TGGTAAAGTC ACCTTGGAAA AATGGAGGTG 002640 002641 ATTTATTAAT TTATTGTTTG TCTGGACTGA CAGTGTCTTG ACAAATAAAA AGATATCCAT CAGACATATC TATTTCTTTC 002720 002721 TCTTAAAGCT AACAATTTAG TACAATAGTG GAACGTCTTT GGCCATCCTG GTCTCCTGTA GGTTTGGCTG TGGAGGAGCA 002800 002801 GGTGCGAGCT TCCAAAGTGT CTTTACAAGT GTCGCAGTGG GGCTTCCCTC CCATGCCTCT GCAGGAGACA GCTCATCTGT 002880 002881 TTAATCCGTA TGTTTTAGTC AACCTTTCTT ATTATGCAGA CAGGGCTCTG AGCCTCAGCT GGATTTTTGA CTCTCTGAAT 002960 002961 GAATTGATGG GGCTCTTTGA TCTAAGAAGA GTGAATATAA ACTATGACTG TATACTTGTG TTATGACAAG AAAGGAAATA 003040 003041 ATAATTATCG CTCTTTTAAA ATATCTGAAG ATTAAAACCT TTGCCTTTCA TTTAAAAACA GCTTTGTAAA TGTGACCATT 003120 003121 GTTTTTATTG CTAATAATAT GTGGGGAATA GGGAGAGATT AGTCAAGGGG GACGAAGTTA TAGTTAGATA GGAGGAATAA 003200 003201 GTTCAAGTGT TCTGTTTGGT TAACAACCTT GTGTTGTATA TTTCAAAATA GCTAGAAGAG AGGATTTTGA ATGTTCTCAC 003280 003281 CTCAAAGAAA TGACAGAGGT ATGAGGTGAT GGATATGCTA AATACTAATT TGATTATTAT ACAATGTATA CATGTATTAA 003360 003361 AACATCACAC TGTACTCCAT GATAGTTATT ACATGTGAAT TAAAACAACA ATTAAAAAGA ATGATACAAT TTTTTTTTCT 003440 003441 TGCCTCTGTA TCCACCAGAA GTTAGCATAG GGAGGAAATT CTAATTGTGC TACTATCGCA CAGCTTGCAT CTTATCTCAT 003520 003521 GACTGAGAAA TATTTAAGTG CTGTTCAGCA AGGTAAGCAT GAGAAAGAGA AGATAAGAAT TCACATAACT GGCCGGGCGC 003600 003601 AGTGGCTCAT GCCTGCAATC CCAGCACTTT GGGAGGTCGA GGCGGGCGGA TCACGAGGTC AGGAGATCCA GACCATCCTG 003680 003681 GTTAACACGG TGAAACCCCA TCTCTACTAA AAATACAAAA ATTAGCCGGG CATGGTGGTG CGTGCCTGTA GTCCCACTAC 003760 003761 TTGGGAGACT GAAGCAGCAG CATTTGAGAG CTTAGCAGAA ATGTAGAATG TCGGGCTCCA TCTCGGACCT ACTGAATCAA 003840 003841 AATCTGCATT TTAGCAAGAT CTCCAGGTGA TATACAGGAT CATTAAAGTT AGAGAAGTCC TGGTATACAG GATAAGTCTT 003920 003921 ACCAATTGCT GTATAGACCT ATGTTCACTT CATGGATAAC ATTTGCTCTA GAAAAGAAAA ATTAACCAGT GGGTGACTGA 004000 004001 TCGTACCCGC CAGCTGGCTA ATGTCATAAT TAACAAAGTT GCTACTACAT CTGCAAAGTT TAATCGAAAA ATTTGCCAGT 004080 004081 GATATGATGG CCTTGTCACA GAGATCACAA GGGACACGGA GTTGACTTTT GCTCAAGGTG GAACGACAGA GCTGTGTAGG 004160 004161 CAAGATGAGA AATTGCGAAC TTGTTCGGCC AAAGGAGGCT AATAATGAAG GGGCCGGGAA GGAGGCCAGT GCTACCAGGG 004240 004241 TTATCTCACA ACCTCAGATG CTGGATAAGT CGACGGAGGC AGAATCGCTT TGGGATGACA TTCAGAAAGC CTGGAGTGAT 004320 004321 TACTTGCAAG AGAAAAGCCT ACCTATTCTT TCCAAGGTGC AGGAATATTC CCCTGACCTG CTCATCCAGT GGTCCAGTAA 004400 004401 TGAATTACTG GAGACCTGCC TTAGACAAAG AATGCACTCG GAGCCCCAAC ACACCTAAAG CCATGCTTTG AAGGATCTGC 004480 004481 CAAGCTCACT TTTAATCATG AGAAAGAAAT TACCCACACG GAGTCAGCAG AAAATGAGAA AGTAGAGCTC GTGCTGTGAA 004560 004561 TAATTCCAGC AAGTGCCAAG GGGCTAGTTG AGGAATGGCT TCATGAGGAA CATGCTCTAG GGGAACTATT AATAGCCCAC 004640 004641 CAGTCGGGTA GGCAGCATTC AATCCTTCTA TGCCTTCTTT CGCCACCTGT TGAGGTCTTT CTTCTGAAAC AAAGAAGAAA 004720 004721 TAGACAAATC AGACTTGCCC TCTTGGAAAT GTGGTCCAGA TTTCTCTACT CCCAAGCTCC AAAAAAGGTA TACATTGGAT 004800 004801 GGGCTAGATC AACTCCTCCT GAGAGCCATA AATCCGCCAA GAGTTGTTTT CCATGTAAGG GTGTGGTACA ATGGGGAACA 004880 004881 CCTGATGTTG GAGGAAAGCA GGAGGACTTT AGAGTGGAGT TGCATTCTAA TCTCTCTGCC GCTTCAACTA TGTGACCTGG 004960 004961 GGCAAATGAT ATAAACTCTA TGAGCCTCTT TCCTTATCTT TAAAATGAAG AGAAGTAATA CCTACCTTGT AGGGCTGTTG 005040 005041 TGAGGATTAA ATGAAGTAAT GCATACAGTG CCTAACAAAG TATTTAACAT CATATTTTTT AAAAGCTCAT GAAATATTAG 005120 005121 TTTTTCTTCC TTCCCCTCTT TCTATTTTCT CTCCTGTTCC CTTTTCTCTC CCTCCTCTGC CCTCTCCTTC CTTCAGATGT 005200 005201 TAGTCTAAAA CAGCACCTTG GATCTAAGCA GCACCTTTGA GAAAGAAAAG ACTGCTTCAA GAATGTCTAG TTGCACCTCC 005280 005281 TTTCCGTATG TGGCCTAAAT GCCTAGGTTG GATCAATAGT TTAATTTTTT TATTGAACTG TTTAATATTG ACTATGGACT 005360 005361 TACATTCACT TTTACTGTTT TCTGTATATT TACTTTTGCT TGAAGTGTTT TAATATTGAC TATTTACC |
Predicted Small Protein
Name | NONHSAT030092_smProtein_17:274 |
Length | 86 |
Molecular weight | 8877.6672 |
Aromaticity | 0.0941176470588 |
Instability index | 46.8670588235 |
Isoelectric point | 9.30084228516 |
Runs | 14 |
Runs residual | 0.0281639928699 |
Runs probability | 0.0427991016227 |
Amino acid sequence | MPGFCWGSKKSGVVCLMVLGSALQLPSAKAQAGRCAAALLRAALSPSVAGWFFGGKLYPI LVTPGNSLFVCYLMVSRLPCLVEPC |
Secondary structure | LLLEEELLLLLLEEEEEEHHHHHLLHHHHHHHHHHHHHHHHHHLLLLLLEEELLLLEEEE EELLLLLEEEEEEEELLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHH HHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTT TTTTTTTTTTTTTTToooooooooo |