NONHSAT030092

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT030092

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5428 nt

Genomic location

chr12+:97858900..97958747

Exon number

16

Exons

97858900..97859505,97882688..97883176,97886239..97886386,97886955..97887065,97887653..97887780,97888473..97888659,97889709..97889834,97900781..97900992,97912490..97912728,97913470..97914206,97916967..97917758,97917993..97918206,97924432..97924637,97954315..97954476,97954575..97954825,97957927..97958747

Genome context

Sequence
000001 CGGCAGGCTC TCTCCAAATG CCTGGATTCT GCTGGGGGAG TAAGAAGTCA GGAGTAGTTT GTCTGATGGT ATTGGGATCT 000080
000081 GCTTTGCAAT TGCCAAGCGC TAAGGCACAA GCTGGCAGAT GTGCTGCGGC TCTGCTACGG GCGGCTCTGT CGCCTTCAGT 000160
000161 CGCAGGCTGG TTCTTTGGGG GAAAGTTGTA TCCAATATTG GTGACTCCCG GGAATAGTCT GTTTGTGTGC TACTTAATGG 000240
000241 TCTCTAGGCT TCCTTGTCTT GTAGAACCTT GTTAGAAAGG AGCCTTGGTG ATTAAGAGGC TATGGAGTAC ACAGCCTTGC 000320
000321 TTAGCAGATG AGCCCTTATC CATTTCCCGT TTCCTTAAAA ACGGCTAATT GATGGATGCT GCAGAAAACA TGCACTCTGC 000400
000401 TAATAAGATG CTGATGACAA AATAGGTATC AGGAAAGGCA TTTACTGCTT ATGAGCACCA TCAGCTTTCT TTCGAGTGAG 000480
000481 ATTGTGGCTT TGTAGTAAAG TTTTTTTTTA AGTAATATGC TAATAGTTTT ATTCTAAATC GGCCAGCGCT GAATATCTTC 000560
000561 AGGAAAATGG GTTCCATGAG AAGTGACATC CTCCTCGAAT CAAAAGAAGA GTTGGGACTT AAACATAAGC CTATAAGCAC 000640
000641 TCAGATTATT GAGAAGTATG CATAAAAAAT GGACAAGCTG AAGATATGGA CAATTTTACT GATGTTTAAT TGCACAATTG 000720
000721 TTAAAATTGC ATCACTGCCA TCGAGGTCAA TTTGACTTAA GTAACTCTGT TTAGAAATAT GAATTATGAT ATAAAAACAA 000800
000801 TTAAGCAAGC AATACTTTTA TGTTATTTAA AACCTTGCTG TATAGGAAAA GCTACTTTTA GGCCAGGCAC AATGGCTCAC 000880
000881 ACCTGTAATC CCGGCACTTT GGGAAGCTGA GGTGGGAAGA TCGCTTGAGC TCAGGAGTTT GAGAGCAGCC TGGGCAACAT 000960
000961 AGCGAGACCT CATCTCTACT AAAAATACAA AAAATTAGTC AGGCATGGTG TCGTGCACCT GTAGTCCCAG CTGCTTGGGA 001040
001041 GGCTGAGGCA GGAGGATCAC TTGAGCCCAG GAGATTAAGG CTGCAGTGAG CTGTGATTCT CAGGATGATG GAGTGAGTGA 001120
001121 TGGAATAGGT TGCCAACTGT AGTTACTCCA CTCAGCACAG AATGGCTGCG GGGAAATATA ATCAGACATG CCCAAAGAAG 001200
001201 TCTGCTTAGG GTGAAACAAA TACCTTTGAG GTTTAAATCA GGTAAAGGAA GGAGAGACTG TTTCTACAGG TGTCATACAA 001280
001281 AAATCAATAC TGAGCCAAGG ATTATTGGAT CCCATAGAAC CACGGAGACT TGGTAGTGAA ATTCTTCCAA AGGTCATTCC 001360
001361 ATCCGTGCAG GCAGATGGTG TTCCTAGGTT TGGAAATATA AATCCCATGG GAAGTCAGCT GAAGACCATT TTATGCATCA 001440
001441 CTCATCCTGT TAGAGCCCTG TGCTGTTCTG TCTCTCTATA AGACTGGCTG AAACCACCAC GGTTGTTTAC AATTTATGCT 001520
001521 CTAACTTTGG ATCACCTAGT TAATACTCTA ACTCCGATTA TTACCAAAGA CAATGTTCTA TAAAAGATAT TGTCTATTAG 001600
001601 AAGGATGCTT CTGCATTATT AATAAAATCA CAGGGAAAAT GCAACATTTT GGATGTCACA TCTGATAAGT TGGCAGTTAA 001680
001681 AGAACAGAAA CAGCAATAAG ACTGCGTGGC TACATTTTCC CAGTGCCACC AACTGGGATT TAAGCTGACT AACATTTTGA 001760
001761 AAGCCCAGCC CATTTCATTC ACAGCAGGAT GGCAGGAAGA TAACACCTGC AAAAGTATGC CACAGTTATG TTGGGAATTT 001840
001841 CAATATGATG GAGCTCTGAG TGTACATGTA TGTGAGGAAA AGGAGGTAAA CAAGGAGTTA GAAAGATGTG ATGAGACCAG 001920
001921 GTGGTGATGG ACTGAATATA AAGCAAAGAC ATCTGGATTT TTAATTCTGT AGGGAATAGC TGACCAAGGT ATATGATTAC 002000
002001 ATGTCTGACC AATTCCCTCC TCTCTACTTC TGTCTTTACC TTATCAAGTC CTAAGTCAAA TCCAACCTTT TGCATTTTTT 002080
002081 AGAAAAAAGG TCTCGTTCTG TTTGTTGTCC AGGCTGGAGT GCAGTGGTGC AATCATGGCT CACTGCATTC TCAAACTCTG 002160
002161 GGCTCAAGGA TCCTCCTGCC TCAGCTTCCA GAGTAGCTGA GACTACAGGC ACCTGCCACC ATGTTCAGCT AATTAAAAAA 002240
002241 AAAAAAAACT TTTTTGTGAG GTCATTAGAA TAAATACAAC ATTTCTCACA GGCACAGAAT CCTAAGTGCC TGTGCTATCT 002320
002321 TCTTACTATA GTTATAGAAC CAGCTTATAT AATTTGGTTT TGCTTTAAGT ATAATGTGGC AATGTGTTCA TAAAAATTGA 002400
002401 AATACACTTC ATGCTACTAA AAATGATAAT TTTCTGAGAA TGGAAAACAA GACTAGCATG TATTTACCAA TGTTATTCAA 002480
002481 GATTGTCTCA AGAAAAGCAT TATTCATTTG GAAAAAATAA TTGATCACGA GGTAGGCACA CTGAAATACT GTTTTAAGGA 002560
002561 ACAGGAAATT TTGCACTATC TACTTCTCTT ATTTTGAAAG TTCAAGCGCT TGGTAAAGTC ACCTTGGAAA AATGGAGGTG 002640
002641 ATTTATTAAT TTATTGTTTG TCTGGACTGA CAGTGTCTTG ACAAATAAAA AGATATCCAT CAGACATATC TATTTCTTTC 002720
002721 TCTTAAAGCT AACAATTTAG TACAATAGTG GAACGTCTTT GGCCATCCTG GTCTCCTGTA GGTTTGGCTG TGGAGGAGCA 002800
002801 GGTGCGAGCT TCCAAAGTGT CTTTACAAGT GTCGCAGTGG GGCTTCCCTC CCATGCCTCT GCAGGAGACA GCTCATCTGT 002880
002881 TTAATCCGTA TGTTTTAGTC AACCTTTCTT ATTATGCAGA CAGGGCTCTG AGCCTCAGCT GGATTTTTGA CTCTCTGAAT 002960
002961 GAATTGATGG GGCTCTTTGA TCTAAGAAGA GTGAATATAA ACTATGACTG TATACTTGTG TTATGACAAG AAAGGAAATA 003040
003041 ATAATTATCG CTCTTTTAAA ATATCTGAAG ATTAAAACCT TTGCCTTTCA TTTAAAAACA GCTTTGTAAA TGTGACCATT 003120
003121 GTTTTTATTG CTAATAATAT GTGGGGAATA GGGAGAGATT AGTCAAGGGG GACGAAGTTA TAGTTAGATA GGAGGAATAA 003200
003201 GTTCAAGTGT TCTGTTTGGT TAACAACCTT GTGTTGTATA TTTCAAAATA GCTAGAAGAG AGGATTTTGA ATGTTCTCAC 003280
003281 CTCAAAGAAA TGACAGAGGT ATGAGGTGAT GGATATGCTA AATACTAATT TGATTATTAT ACAATGTATA CATGTATTAA 003360
003361 AACATCACAC TGTACTCCAT GATAGTTATT ACATGTGAAT TAAAACAACA ATTAAAAAGA ATGATACAAT TTTTTTTTCT 003440
003441 TGCCTCTGTA TCCACCAGAA GTTAGCATAG GGAGGAAATT CTAATTGTGC TACTATCGCA CAGCTTGCAT CTTATCTCAT 003520
003521 GACTGAGAAA TATTTAAGTG CTGTTCAGCA AGGTAAGCAT GAGAAAGAGA AGATAAGAAT TCACATAACT GGCCGGGCGC 003600
003601 AGTGGCTCAT GCCTGCAATC CCAGCACTTT GGGAGGTCGA GGCGGGCGGA TCACGAGGTC AGGAGATCCA GACCATCCTG 003680
003681 GTTAACACGG TGAAACCCCA TCTCTACTAA AAATACAAAA ATTAGCCGGG CATGGTGGTG CGTGCCTGTA GTCCCACTAC 003760
003761 TTGGGAGACT GAAGCAGCAG CATTTGAGAG CTTAGCAGAA ATGTAGAATG TCGGGCTCCA TCTCGGACCT ACTGAATCAA 003840
003841 AATCTGCATT TTAGCAAGAT CTCCAGGTGA TATACAGGAT CATTAAAGTT AGAGAAGTCC TGGTATACAG GATAAGTCTT 003920
003921 ACCAATTGCT GTATAGACCT ATGTTCACTT CATGGATAAC ATTTGCTCTA GAAAAGAAAA ATTAACCAGT GGGTGACTGA 004000
004001 TCGTACCCGC CAGCTGGCTA ATGTCATAAT TAACAAAGTT GCTACTACAT CTGCAAAGTT TAATCGAAAA ATTTGCCAGT 004080
004081 GATATGATGG CCTTGTCACA GAGATCACAA GGGACACGGA GTTGACTTTT GCTCAAGGTG GAACGACAGA GCTGTGTAGG 004160
004161 CAAGATGAGA AATTGCGAAC TTGTTCGGCC AAAGGAGGCT AATAATGAAG GGGCCGGGAA GGAGGCCAGT GCTACCAGGG 004240
004241 TTATCTCACA ACCTCAGATG CTGGATAAGT CGACGGAGGC AGAATCGCTT TGGGATGACA TTCAGAAAGC CTGGAGTGAT 004320
004321 TACTTGCAAG AGAAAAGCCT ACCTATTCTT TCCAAGGTGC AGGAATATTC CCCTGACCTG CTCATCCAGT GGTCCAGTAA 004400
004401 TGAATTACTG GAGACCTGCC TTAGACAAAG AATGCACTCG GAGCCCCAAC ACACCTAAAG CCATGCTTTG AAGGATCTGC 004480
004481 CAAGCTCACT TTTAATCATG AGAAAGAAAT TACCCACACG GAGTCAGCAG AAAATGAGAA AGTAGAGCTC GTGCTGTGAA 004560
004561 TAATTCCAGC AAGTGCCAAG GGGCTAGTTG AGGAATGGCT TCATGAGGAA CATGCTCTAG GGGAACTATT AATAGCCCAC 004640
004641 CAGTCGGGTA GGCAGCATTC AATCCTTCTA TGCCTTCTTT CGCCACCTGT TGAGGTCTTT CTTCTGAAAC AAAGAAGAAA 004720
004721 TAGACAAATC AGACTTGCCC TCTTGGAAAT GTGGTCCAGA TTTCTCTACT CCCAAGCTCC AAAAAAGGTA TACATTGGAT 004800
004801 GGGCTAGATC AACTCCTCCT GAGAGCCATA AATCCGCCAA GAGTTGTTTT CCATGTAAGG GTGTGGTACA ATGGGGAACA 004880
004881 CCTGATGTTG GAGGAAAGCA GGAGGACTTT AGAGTGGAGT TGCATTCTAA TCTCTCTGCC GCTTCAACTA TGTGACCTGG 004960
004961 GGCAAATGAT ATAAACTCTA TGAGCCTCTT TCCTTATCTT TAAAATGAAG AGAAGTAATA CCTACCTTGT AGGGCTGTTG 005040
005041 TGAGGATTAA ATGAAGTAAT GCATACAGTG CCTAACAAAG TATTTAACAT CATATTTTTT AAAAGCTCAT GAAATATTAG 005120
005121 TTTTTCTTCC TTCCCCTCTT TCTATTTTCT CTCCTGTTCC CTTTTCTCTC CCTCCTCTGC CCTCTCCTTC CTTCAGATGT 005200
005201 TAGTCTAAAA CAGCACCTTG GATCTAAGCA GCACCTTTGA GAAAGAAAAG ACTGCTTCAA GAATGTCTAG TTGCACCTCC 005280
005281 TTTCCGTATG TGGCCTAAAT GCCTAGGTTG GATCAATAGT TTAATTTTTT TATTGAACTG TTTAATATTG ACTATGGACT 005360
005361 TACATTCACT TTTACTGTTT TCTGTATATT TACTTTTGCT TGAAGTGTTT TAATATTGAC TATTTACC
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Predicted Small Protein

Name NONHSAT030092_smProtein_17:274
Length 86
Molecular weight 8877.6672
Aromaticity 0.0941176470588
Instability index 46.8670588235
Isoelectric point 9.30084228516
Runs 14
Runs residual 0.0281639928699
Runs probability 0.0427991016227
Amino acid sequence MPGFCWGSKKSGVVCLMVLGSALQLPSAKAQAGRCAAALLRAALSPSVAGWFFGGKLYPI
LVTPGNSLFVCYLMVSRLPCLVEPC
Secondary structure LLLEEELLLLLLEEEEEEHHHHHLLHHHHHHHHHHHHHHHHHHLLLLLLEEELLLLEEEE
EELLLLLEEEEEEEELLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHH
HHHHHHHHHHHHHHHLLLLLLLLLL
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