NONHSAT030100
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT030100 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3158 nt |
Genomic location |
chr12+:97917741..97921511 |
Exon number |
2 |
Exons |
97917741..97919858,97920472..97921511 |
Genome context |
|
Sequence |
000001 ctacttggga gactgaagcg ggagaatggc gtgaccccgg gaggcggagc ttgcagtgag ccgagatcgc gccactgcag 000080
000081 tccagcctgg gcaacagagt gagactctgt ctcaaaaaaa aaaaaaaaaa aaaaaaaaaa aTCACATAAC TGTATGGTTG 000160 000161 AATATCCATT GTGTTCTTTA CAAAGTATGT CATTCTTTCT GTAACATCCG TGGTGGAATA TAACCTTAGT ATTACACAAC 000240 000241 Caccatcagc agcagcagca tttgagagct tagcagaaat gtagaatgtc gggctccatc tcggacctac tgaatcaaaa 000320 000321 tctgcatttt agcaagatct ccaggtgata tacaggatca ttaaagttag agaagtcctg GTATACAGGA TAAGTCTTAC 000400 000401 CAATTGCTGT ATAGACCTAT GTTCACTTCA TGGATAACAT TTGCTCTAGA AAAGAAAAAT TAACCAGTAG AGAGGGCCAG 000480 000481 CAACTGTTCA TACCCTAGAG CTGTGATTGG CCACCTAATA GTGTCTAAAA TTATGATGCT GACAATGACA CTGCTGCTGC 000560 000561 TGTGGATAAC ACCCATTATC AGGTGTTTCC AAGTGTTAGC CATTTTGTCT AATATGTCAA CTAATCTGTT TAACTATCAT 000640 000641 CTACCTCCTG AGTTTTATGC TCTTTTACAG ACAAGACAAT TGAGGCAACA GGTTGCCTAG GATCACCACC CCCTTGTAAA 000720 000721 TACAAGCATT CTGATGGCTA GCCTCAGGTA TGCCCAAGGT AGAGTCTGTG ACTGGGAGCT GAACTTTTTA AAAGTAAGAC 000800 000801 AGACTATTTG TTTCAAATAG GAAGAAACTA TGACACTTGA AAGCTTCCTA TGAAGTTGTC AATTGAAATT TGTTTAGATA 000880 000881 ATATTTGTAA TGAGCAATGT GTTCTCCAAT TTGCATATTT GAAAAGATAA GGAAAGCCTT CTGTTTTAAG CTCATATCAC 000960 000961 ATGTTCAGGC TATCAGATCA CAATTTATTG TGTATTATGT GCCATGTGGC ATCTTAAGCC CCATTAGAGG CCCTTAGCCC 001040 001041 TGGGCATTCT ACTGGCATCT AAAGGATGCC TTGAGAGTGA GCTGCTTTTC TGAGGACAAA TATTTGTACA TTTGTAACAT 001120 001121 GGGGAAAGGA CTCCTTACTT GAAATGGCTT TAGAATTGTA GAGAACATAG AAATGCGGTT TGTCTCTTGT GTGCTAAATT 001200 001201 AAATCCTTTT AAAGGAAGAC ATCCTTTGAG AAAGGAGATG CAGGAATACC AACATTTTGA TGTTTATTGG GTGACAAAAA 001280 001281 TCAACTCAAT CAACAAATGG TTTTGAAAAT AACATTGAAA TGTGAATTGG AAGCAAAAGG TAGTGAGGTC ATGTTATGGT 001360 001361 GCAGAAAAAC AATGCTGTGT GTACTGCTGA TCAACTAGGT AGGCATTAGC GGGTGGATCA TGGCCACTAG CATGGGAAAG 001440 001441 GGAAGAGTTT TTATAAATGA ACTAGAATAG ACTGCATATT CAAGTAGGAA TAATGACTCT TTTTAAAAAT TATTACATTT 001520 001521 GTTCCTGGTT TAAAAGGAGA GCTACATATA TAACATAAAT TTATACAACC TCAAAGGATA TACTGTGAAG ATTAGTTTCT 001600 001601 TCTCCTCTTC TGTCCCCAGA CCCAAGTTTC CCTACTGACA CAACCAGTGT GTGCAGCTCC TTGTATATTT TTCAGAAATA 001680 001681 TCCTCCAAAT ACCTCATAAA GAGTTATGAA ATATCTTCAT AAATAAACAG TATATGCAAA AGCCTTGTTA AACAAAAGGG 001760 001761 TAATATACca ggggccccta atcccctggc cacaaaccag agcacaggtc tgtaacctgt taggaaccag gctgcacagc 001840 001841 aggaagtgtg tggcctgcaa gtgagagaag cttcatctgt atttacagcc agtcaaaatc acttgcatta caacctgagc 001920 001921 ttcgcctcct gtcagatcag tggtggcgtt agattctcat agcagtgcga accctgttgt gaactgtgca tgcgagtgat 002000 002001 ctgggttgtg cactccttat gagaatctaa tgcctgatga tctgtcactg tccccatcac cctcagatgg gtccatctag 002080 002081 ttgcaggaaa acaagctcag ggctcccact gattctacGG AAGCTATtta ttactattat tattgttgtt gttattaCTG 002160 002161 ATTtgagtga gaaagctagg ataggaattc acccaagatg cttgtctttg gatcccttgc tcttgtttgc tacactgtac 002240 002241 tgtttctTGG TGATTCTGTT GCTACTTTGG CAATGAGAGT Gcatttattg gatatctacc atgtgctaag cagatgacat 002320 002321 gtgttagtca cagtcttcat aatagcacca tgagAtgttg ttgttgttgt tgttgaacag attcttggta aggtttacta 002400 002401 acttgcccaa agtcccagag ctagtaagca aggagctagg aatggcctgg aagcaggatg tctgactcTT GTGACTCACG 002480 002481 ACAGAGAAGG GAGTTTCAGG TATTGATTCT ACATCTAACA GGCTGGAAGG CAGAAATAAA ACTAATATAC ATATGAGGCT 002560 002561 TAATTAAACG TATTGAAGTG ATAAGAGGGA TAGGAAGGGC TGTCACAAGG ACCAACGGAA GACAGTTGGT GGGGCACAAA 002640 002641 GATAAAAAGC ATCTGTAGCA GAGAGGAGCC GTGTGGATCC AGAATGCACT CTTCTCTATG GAGAATGTTT CCAAATCTAG 002720 002721 ATTGCTTTGT TCTCACCAAC TGCTTCAACC GTTAAAACAT TCCACACCTG TACATTGCAT GTATACCTTC AACAACCCAT 002800 002801 TGTCATTAGA ATGGCAGCAA TGAGAATGGA ACATGTGGTG CTTGCATGTC CTAGAGAAAG AACAGCCTTA GGTGACTGCT 002880 002881 CCGAGTTGGA CTTTGTGGCC ACAGGGAGCA GAAATCAGCA AGTGCCCCAC ATTAGAAAAT AAAAGTAAGA GTGCTAAGAA 002960 002961 AAGTAAGAGT GCTGAGATTC TTCAAGGCAA TGCCAATTTC TCCAGGTCAG CTTCTCCTAT TTTAATCTGT TTCCAGCAGT 003040 003041 TCTGCATCTT TGTAGGTATG CCATAAGCAG CCATAAAAAA GGCAAAATTG TACGATCTAC AGGTCTAGTA AAATTATAAG 003120 003121 TCATGTAGGT CTTATAGAAA TTATAATTTT AACTGAAG |
Predicted Small Protein
Name | NONHSAT030100_smProtein_2036:2275 |
Length | 80 |
Molecular weight | 8921.8923 |
Aromaticity | 0.0632911392405 |
Instability index | 44.5962025316 |
Isoelectric point | 9.03948974609 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0532591414944 |
Amino acid sequence | MICHCPHHPQMGPSSCRKTSSGLPLILRKLFITIIIVVVITDLSEKARIGIHPRCLSLDP LLLFATLYCFLVILLLLWQ |
Secondary structure | LEELLLLLLLLLLLLLLLLLLLLHHHHHHHLLEEEEEEEEELLLLLLLEEELLLLLLLLH HHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLH HHHHHHHHHHHHHHHHHLL |
PiMo | oooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiT TTTTTTTTTTTTTTTTToo |