NONHSAT030400
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT030400 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1752 nt |
Genomic location |
chr12+:104352892..104357920 |
Exon number |
3 |
Exons |
104352892..104352958,104356173..104356953,104357017..104357920 |
Genome context |
|
Sequence |
000001 tctgccatac aaatgaaatc ttaactttct tacttcagaa cgctgactcc attcctttgg agctggtaga aattttacag 000080
000081 ctttgggttt tacatttaag tccatgatcc attttgtttt tttatatggt gtgaggcagg aggtgcgact tgactcccaa 000160 000161 ggtggagctt ggacacagga ccagattgag gaccagctaa aacagggaag aggtggaagc tcttctccat aaaacacacc 000240 000241 aactaatgtg ccctgtcagt ttagctttgc catggcaaca cccagatgct accactcctt tccatggtaa tgacccactg 000320 000321 acccaaaagt tacctccctt tttctagaaa tttctgcaca ctcagcccct tgatttgcat ataattagaa gtgggtataa 000400 000401 atatgactgc agaactgcgt ctgagctgct actctgagca cactgcctat ggggcagcct tgctctgcag gagcagtctt 000480 000481 ggagttgtaa cactgctgcc tgaataaaac tgttttcagc tcactcttga tttatttcct gggtgaagcc aagaacactc 000560 000561 ctgggctaag ggcttgcctg ccctgtgtca tgcatacaac tttgttttgt ttttgcatat agatatctga actacctttg 000640 000641 aagcttagtt gaaaatcagt tcatcacttg tccatgtatg tgtctatttc tggactctat tctgttgcac tgatatatat 000720 000721 ttctctctct tgatgctaat actacacttt tttttttttt ttttgagaca gggaatcatt ctgttgccca ggctagaatg 000800 000801 cagtggcatg atctcagctc actgcaacct ccacctcctg ggttcaagaa tttttgtagt tttttagcag agacggggtt 000880 000881 tcaccatgct ggccaggccg ttctcgaact tctggccttg ggtgatctgc ccgcctcggc ctcccaaagt gctggggtta 000960 000961 caggcatgag ccactgcgcc cggctaacac tgtcttgatt actgtagcct tataataatt cttaagtcag gcagtattag 001040 001041 ctctcccagc tttggctatt ctagatcttt gcatttccat ataaatttta gaatcatttt gtcaatttct acccaaaaac 001120 001121 gcttacctgg attttggtta gcattatatt gaatctttaa acatcttcac aatatttggt cttctgatcc atgaatacaa 001200 001201 catatccgtg tacttattta gttcttaccc aatttctacc agcaatgctt ttcacttttt atgatagaaa tcttgcgtct 001280 001281 tttgtcagct ctatccttaa atatttcata tttttgatgc tattgtgaat ggtatttttt ctaattgttt gttgttagta 001360 001361 cataaattac aattgatctt cctatattga tattttatct tgcaaccttg cgaatctcac ctattagctg tactaggttt 001440 001441 tttgtaggtt ccacaggatt ttctacataA ACCAGCACCA GAGCAATGAA CAAAGACAAA TTGTTTTTTT TTTTATAGAT 001520 001521 GTCATTTATC AATCTTCAGG AAGTTTACAA GGAAGTTCCC AGTTCTGTTT CCAGATTGCT AAAAGCTCTG GTGGGCCAGG 001600 001601 TTCACAAGCA GAAAAAGTTT GTCTTCCAGA CTCAGATGCA GGATGTTGAG AGAGAGACAC TGATGGGATA AAAGCCAGTT 001680 001681 TGCTGCAACT GCTTCACCAT TTTTAGGTTC AGTGTCCTCA CCGACAACTC CTCCCATAAG Cttttttttt tt |
Predicted Small Protein
Name | NONHSAT030400_smProtein_797:997 |
Length | 67 |
Molecular weight | 6935.8107 |
Aromaticity | 0.0757575757576 |
Instability index | 45.4803030303 |
Isoelectric point | 5.97821044922 |
Runs | 7 |
Runs residual | 0.0445472690982 |
Runs probability | 0.0360234183763 |
Amino acid sequence | MQWHDLSSLQPPPPGFKNFCSFLAETGFHHAGQAVLELLALGDLPASASQSAGVTGMSHC ARLTLS |
Secondary structure | LLLLLLLLLLLLLLLLLHHHHHHHHHLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL EELLLL |
PRMN | - |
PiMo | - |