NONHSAT030649
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT030649 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2342 nt |
Genomic location |
chr12+:110661481..110666307 |
Exon number |
2 |
Exons |
110661481..110661551,110664037..110666307 |
Genome context |
|
Sequence |
000001 aacctgggag gtggaggttg cagcgagcca gattgctcca ttgcactcca gcctgggcaa caagagcgaa aaagattgtg 000080
000081 ccactgcact ccagtctggg tgacagagcg agattctgtc tcaaaaaata aaaattaaaa aaattaaaaa agattaaaaT 000160 000161 ACAATAAGGT AATTAAGCAA AACCACAAAA TTTATCAAAT TCGGTTAAAT CCAGAATCTG TTGAACAGTT TTATAGATAT 000240 000241 TTCTTGTCTT TTTCTGTGAA AATACCAACA GGCAATTTCT TTCTTAACCA AAGAAATTAA CAAGATAATA CTTGATTAAT 000320 000321 AGGAGAATGA AATTAAAAGT CCactcattt attttgatgc gaatatttgt tatcttgtgt gcctgacact gtgctaagtg 000400 000401 ctaaaataga aattgaacat gacctagttt ttgctctcaa agacctcaca gtttagaaga ctcaaatatt atgcagcaaa 000480 000481 ataagtgctg tgtgtacaaa gaacagggag ctcagaggaa gcagcaatta gtactgatgg gggattgtgg aaagattaac 000560 000561 agaggagatg gaacttgagc tgatttgtaa ggatgagtta agatgttgat aggcatggga aaagtgaaga cataaaggca 000640 000641 tttaaggata cagcatgtga aggAAAGGAC AAGAAGTCTA GTAGGGCTCG GTAAGTTACA CAGGTGCATG GGAGATGGGG 000720 000721 AAAGAATTCA TATTATGTAT CAAGCTCTTG AGTTCTGTAA TGTGCTGGAC ACTCAGACTG AATGAAAAGG TGCAGTAAAA 000800 000801 ATATAAGTGT GGCCCCTGTT GTTAACACGA CTATATATTA AACAACAGTA AACACATCAA GAAGTAATAA CCAAGTACTA 000880 000881 AATTTTGTGG AGCAATAGAA ATTCAATCAA ATTGGAGCTA TAGGGAAGAG CAGAAGGTCA AAGAAGAGTA gagtcaagga 000960 000961 ggctttatca aagaggtagg aactgatctg ggcctggaag gatgggtaag atgtggacag atgaatggga gaacatggca 001040 001041 gaacagcagg agtgaaACCA GCAAGTATTC ATCACCCACC ACTCCCTTAT CCAGCTCTAT AGCAAGTATA TTGAGCAAGA 001120 001121 AAAGCATGGC TGTCACTTTT AAGCAGCTTA AAGTCCAGTT ATCAAGATAA GCGATGTAAC CAACAAATCA GTGCTGGATT 001200 001201 AGCCAGTAGG CAAACATGCA CTACAGATTT TCTGAAAGTA TATGATATTT CAAAAATCAA AGAAGTTTCC ATTAGAAAAA 001280 001281 gctgggcacg gtggcttaca cctgcaatct cagcactttg ggagaccaag gccgggcaga tcacttgagg tcaggggttt 001360 001361 gagaccaaac tggccaacat ggcaaaaccc ctgtctctac taaaaatata aaaattaccc agagtagtga cgcgcgcctg 001440 001441 taattctagc tactcgggag gctgagacac gagaatcgct tgaacccaga aggcagaggt tgcagtgagc cgagatcgca 001520 001521 ccactacact tcagcttggg tgatggagtg agactctgtc tcaaaaaaaa aaaaaaaaag gaaaagagaa agagagagag 001600 001601 aaaaaaagga aggagggaag gaaggaagga agagggaaag aaagagagaa agaGCAGAAC TCTGTTAGAC TTCCTTATAT 001680 001681 TCGTATTATG GTTTAGTCTT TGTTTCTTCT CATTGCATGT AGTGGGGAGG GGAACTATAA TTTTTTGGAA GTTAGAGTCT 001760 001761 CTAAAAATTT TAGTTCAGCT TCCTGGAATG GGATAAAAAC CACATAGATA GTAGAGTTAA TAATCCCCAC AGAACTCAAA 001840 001841 GTGGGAGAAA ATACAGGCTG GAGCAATCTG GTCAGcctag aggagaaaac attcaagtta aacctcttat ggaagcttga 001920 001921 gtagaaattg gctccaagag ggagcaagag ctccgtggag aaaaggaagc cccaaaaggg aatgccctga ggtatgagcc 002000 002001 agacccagcc ggagggaaca gagaagatga agctggaaag ggagtgagAG ATTGAAGCTG AAGGTTTCTA GTTGGTGGGA 002080 002081 TTATCAGCCA TGGTCTGTTG GTAATAACAA CAGGAGTTCT TCTTAATATC CTTTTGAACT GTTGATGAAA TGAGATTCAC 002160 002161 TGCATTGTAG AGAATGACAA ATTATCATCT TCCACGGAAG ACTGCCATCA TGGACTAAGT TTGGTTTATT TTTTGTGACA 002240 002241 GAGAAGAGCA ATACAGGTGG TAAGCCAGTT AATTTGTTTC ATTGTGTTTT GGGGGTTATT TTTTACACTA ATTGAAAGAT 002320 002321 TCGGCATttt attttatttt at |
Predicted Small Protein
Name | NONHSAT030649_smProtein_1241:1402 |
Length | 54 |
Molecular weight | 6183.1011 |
Aromaticity | 0.11320754717 |
Instability index | 46.6132075472 |
Isoelectric point | 11.0051879883 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0355060943297 |
Amino acid sequence | MIFQKSKKFPLEKAGHGGLHLQSQHFGRPRPGRSLEVRGLRPNWPTWQNPCLY |
Secondary structure | LLEEELLLLLHHHLLLLLEEELLLLLLLLLLLLLEEELLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |