NONHSAT030961
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT030961 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2090 nt |
Genomic location |
chr12-:117147979..117150681 |
Exon number |
2 |
Exons |
117147979..117149093,117149738..117150681 |
Genome context |
|
Sequence |
000001 CTCTACTAGC CCAGCGCTGC CTCAAGGAAT GGCATTATTC CTTTGCCACT GTGTCCTCAC CGCACTCTTG GACTCCGCCG 000080
000081 AATGCAGACA CCCTCCTGTC TGCAGAAGGA TCTGGAGGGG TAGAACGCTT CCCCTCTACG ACGGATTGAC TCCCCAGCAC 000160 000161 CTCACCAGCA GTTCTTTGAA TGGAGTGGCT TTGGAGGTGG GAGTTGAGGA AGAAATGTGA GCCTGTCATT ACAGGTTCTG 000240 000241 TTTAGAAAAC TAGTCATTCT ACTAAAAAGG TATCACATAA GTAAGTAGGA GCAATAAAAA CAAAGAAGAT AGTGGGACTC 000320 000321 CGAGAAGCTT TCCCCGCCTC TGGCCTGTTA GTCTATCGTT CGTTGGGCAA GGCTCTTCCA GTGTGTGACC TTTTGCGTGT 000400 000401 TATCACAGCA TGAGTGCAGT TTTGTGTACA GGCATCCCTA TATTCAGCAT GTATCTGCAA CATGCCTTAC CTCGTCTGCT 000480 000481 GTCACAGAGC AAAGTGGAGC AAGTGGTCGC CGTTGGTCTG CACCTGAGCT GGGAGCCGAG TGGTGACGTG CATATGGGCC 000560 000561 GACTGCGTCT CCACAGAACC TACTCAGTGA TCTTCCTGTG TACGACTCGG TCCCTGATGT TGGAGTTGAA CCGTAGGACT 000640 000641 GTCTGTAAAA TGAAAGTGCA GACTTTAATG TAGTAAAGAG AATGACTTGC CAGTTACAAC CAATGAGCAA AGCAGTTAAT 000720 000721 TATTCAAATA TTTTACCAAG AGTCCAGGTT TATTTTTTCT CAGGACTACA CATTCTGTGA GACCAGAGGG ACCAAGACAT 000800 000801 ATCACTACCA GAAATGTGTT TTCATCAGCA CTGCCAGAGG TTTTCATAGG GTAGTTTACT CTTGGAATTT TTAAATTCAT 000880 000881 ACTTTTTTTT ATGCAACGTG GGGTAGGTAA GCTTCTGATC ACTGTGCACC CAGATTATCC CAAAGTGCTG GGATTGCAGG 000960 000961 AGTGAGCCAC CGCGCCCGGC CACATCTCAC TATTCTTAAG GAAGAGAGAG AGCGAGAGAG AGTGTTGTCC TGTCCTGTGG 001040 001041 GGATTGGGGC ATTGTATTAA GTTGTACTGG GGGATGTCAA GATAGAAATG TTGAGTAAGT TACTACCTGA ATAAATATTT 001120 001121 GACCAGTTGA TGCTAATTTG AATAGTAAAT GTGATGACAT TATATATTCT CAGGGATGTT TCCATACATT GGCTCTGTGT 001200 001201 GTGCGTGCGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTAACAAA AGCAGTATGA AGTATGTGAG CAATATCCTA 001280 001281 ATTTTATTGA CAAGAGCACT GACCTTAATG ACCTTGAGTA AATTACCCTC TCCGGCTTTG GTTTCCTCAT TTGTCAATTA 001360 001361 AGGGTGATGG CTAGCGTATC TTGCAGATCC AAATTCCAAT TTTTGTAACA AGCCAAAAGT CCCCCTGGCT GTTAAAGCAA 001440 001441 GACCAGAGCC CTCGTATCCC AGCGGCTGGG TCCCAGGCTT TTGATTTTCA CAGGACAAAT GTAGCCTAGC CATCTGGAGC 001520 001521 CCGTTTTTCT CCAAACCAGG GCTTCCTCCT TCTCTCTTGC AGATTTCAAC TGGGGCTCAC CATTTTCTGC CTCTTCCTCC 001600 001601 TCCAGTTTTA AAGAGACACC ATATCCTTCT CTGCTGGGAC CAACTTCCCA TGTACTGCTG CCCTGCACCT GTGAAAACAG 001680 001681 CTGCTGTGTT TTCTGTCATA AAAATAGCTG CCTTTTGGCA GAGAAGCACA CAACGGTACT ACGTTTCTGA GCCTTAATGC 001760 001761 AGTGCTCAAT TATTTAGGTG TGCTTCACCT GAGATACACA GAGCATCTTG GAACTCCTAC TAAGCAGGGC TTCTACAGGC 001840 001841 ATTGCTCAGC TCAGTAAAAG GTTTTCCTTT CTCTGCTTTT GTGATTACCA GGCAGAAACC TTAAAATGTA TGAACTTACA 001920 001921 AAGAAATTAA ATTGTGCCAA ATTAGATTCC CAGCCCCTAG AGATAACCAC TAATTAAAGT TCCGCTGGAG CGTTTTGCCT 002000 002001 GTATTTTGTA TATAAACGTG GATTTTGTAT TTGTATGTAA ATAAAGGTAG GACCCTGCTG TCCATATTAT TTTAAAAAAA 002080 002081 AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT030961_smProtein_1175:1360 |
Length | 62 |
Molecular weight | 6538.0552 |
Aromaticity | 0.0655737704918 |
Instability index | 51.306557377 |
Isoelectric point | 8.72320556641 |
Runs | 9 |
Runs residual | 0.00527605049934 |
Runs probability | 0.0226108461402 |
Amino acid sequence | MFPYIGSVCACVCVCVCVCVCVCNKSSMKYVSNILILLTRALTLMTLSKLPSPALVSSFV N |
Secondary structure | LLLEELEEEEEEEEEEEEEEEEELLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLEEELL L |
PRMN | LLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL L |
PiMo | TTTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTTTooooooooooooooo o |