NONHSAT031752
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT031752 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1952 nt |
Genomic location |
chr12+:126630052..126656211 |
Exon number |
6 |
Exons |
126630052..126630146,126637659..126637802,126637888..126638004,126650383..126651877,126655861..126655885,126656136..126656211 |
Genome context |
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Sequence |
000001 TCCAGGAGCT GAGAATCTGC TTAAATTGAC TTAGcagggc tcaggaaatg gcattctgaa gtccaaatct aacacaccac 000080
000081 ctagttttgt aagagCCTTA AGGAGTTCCT AACTTCTGGG TGAGAGTCAG AGAAGTGGGA TCATCACCCC CATCCTGTAC 000160 000161 ATGGGAGGTA AGAAAGGGGA CAGGAAGGTC TTCAGCCAAG TTTGCAATTC TTGAAAGAAT CCTGTCTGAG ACTGTGAGGc 000240 000241 ggtttcagga gcccataaat ttctctttgg tctgagcctt ttctgtgtgg gcttctgtca cttgcaacca gaagagACAT 000320 000321 CTGTTGAACT CAAAGGATGA GAAAAGGGTA TCTGGGacag atggggaagc tgaggcccag agaagttaag taagttgtct 000400 000401 aagttcacaa agttaCCAGA AGATTGTGGA GTGGTCTTCC AGGGAGAGTT ATCTTGTATC AGGAAGGAGA GATGATTACT 000480 000481 TAGGAAAGCC CAAGAAACAA CAGGTATTTG AAAGCTATAG CAGTTCATCT GGGGTTGATC TGGGAGCATA CAGCAAAAAA 000560 000561 AGAGCTAAAA TGCAAGGCAC CAACGTAGAA AAGCCCACCT GGTCTCTCTT CTTAGGGTGG CTCCTCTCTG TCTCTCTGCC 000640 000641 TCTGCCTCTT GTCCTAGCCC AGCATGGCCG CAGGTCCCAG GTTCTGTGAC ATCACAGTGC AGTGCCCACA GCTCACTGTT 000720 000721 GGTTCCTGCC ATTGAGATTA TCTGATTGGC CACTGGCCAG CCAATGGTGG ATCAGACTTT GGAGCAGGTG ATCCTTGGAC 000800 000801 GCCCACAGTA CATCACCTTC ATGAGCGCAT CAGTGAACAC CAGTCTAAGG AAGACATCTC TGAACGTAAT TTTGGAGATT 000880 000881 TTGATGAGTT CCATTGAAAC AAGGAGGAAT GTGATGTCCA GTATCAGTTC TGCAGACCCA AGGACAAAGA AAATTCTGTG 000960 000961 ATAAACTCAT CCAGTGTGAC TGTAATGTGG GTATCTATTT GATACCTCCA AGTAACTGTT TATTCTTGTG CCAGTTGAGT 001040 001041 AGATGGTACG GGCCAGTTGG TGTTGATTAG TGAACCACGG ACAAAGGGCA TATGTCACAT GAGTTGCTCC TGGATAAAGT 001120 001121 CACCCAGTCA CTTCCTGATG AATATCCTGC ATAAACTCCA AAGACAAAAG AGAGTTAAGG TTGTTTTTCT CACCTTAGAC 001200 001201 CAGGCAGTGA TAGAAGAACT GGGGGAAGAG ATAATTGTAT TTATCTTGGT GAGGGTGACA AATCATGGCA AATGAGCAAA 001280 001281 ATGAAAAAGG TTTGCAGATT TCAACAAACT TCTAAAAGAT CAGCTTACAG TCATGTATAC ATCTCTTCCT TTGTTTCTAG 001360 001361 TTTATTTGCA TCTCATTACT ATGTTCTCGG TTTAGGATAC AAGACACCGG ACTTTCAAAT CAACAATTGT TTCAAAAGAC 001440 001441 TCCTACTGGA TTCCTGCTAG TGATGGGAGA AAATTATCAT TCTGTGAGTT GTCAATAAAT GTTTAACCAC AGTTCACCTT 001520 001521 TTTTGGATTT TAAGATGTCT GCGCCACTAG GACGCTCAGA AAAATTACCC TCCAAATGCT ACTTGGAGGA GGATTCAGTA 001600 001601 CCACCCTGAG AAGGCAACCA GCTACAACCT TGGTTGTAGT TTCGGTTGCA GAAAGAGCGT GAAGTGTGCA ACTCATGTCT 001680 001681 GTCTTCATTT TAATAGGCTA GTTAATCTGT AGCCAGAGAT GATTAAGGAG GTCATTAAAG GAAAACAAGC TGCCCACCAT 001760 001761 GCTGATGCCT GGTTGTTCAG ATCGTTGAGG TGGTGTAGAG ATGACGCACA CTGGCTCAGT TTACCCACAT TTGGATCTAC 001840 001841 GGACCTGCAA Ggatgaaaag aATATGTCTA AGATCCGGCC CTGCTGGAAA TTTTCCATGC TCTTCATTCG TTCTCCTGTA 001920 001921 TTTCCTAACG CCAATAAAAG AGGAGATCCC TG |
Predicted Small Protein
Name | NONHSAT031752_smProtein_1271:1459 |
Length | 63 |
Molecular weight | 7224.3473 |
Aromaticity | 0.161290322581 |
Instability index | 57.2725806452 |
Isoelectric point | 9.67181396484 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.0504568739863 |
Amino acid sequence | MSKMKKVCRFQQTSKRSAYSHVYISSFVSSLFASHYYVLGLGYKTPDFQINNCFKRLLLD SC |
Secondary structure | LLLLLEEEEEEELLLLLEEEEEEHHHHHHHHHHHHEEEELLLEELLHHHHHHHHHHHHHH LL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL LL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooo oo |