NONHSAT032029

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT032029

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2521 nt

Genomic location

chr12+:132146205..132149749

Exon number

3

Exons

132146205..132146437,132146914..132147774,132148323..132149749

Genome context

Sequence
000001 CAGACACCCA CCCGCGGCTG GACGCGCGGA GCCCGCCCTG GGCCTCCCTC CCCGGCTTCA GGTCCCCGCC TCGGCCCTGC 000080
000081 CCACCTGGGG CTGCGCTCCC TGCAAGTCTG CGGCCCCCAC GCGGCCCTCG GCCCCGGCGC GGGTCTTCTG CGGACGCCTC 000160
000161 CAGCCAGCTC CGGGTCCCTG CGCGGAGGAC GCTGATTCGT GTCGTTAAGC GGGTGAAGCG GGTGTAGACA GAGagcccag 000240
000241 gacagcacct ggcccgtagt aggtgccgca agaaacgctt cttgaaggaa ggaaGGAACG AACCCACGAG TATTGCAGGA 000320
000321 GGATTAAATG AAAGATCAAT TCATCCCACC TCACGGTAAT AGGCACCCTG TTTCCTCCCA GCCCCGAGAT TGGAGAGTTT 000400
000401 GTTTTCATCC TCCTGTTGTC TGAACACAGC ACAGAGCAAT CCTGAGACAC AAAGCAACGT GCCTTTCAAA Atttttaata 000480
000481 aacatggaat cttgctatgc tggccaggct ggtcttgaac tgctagcctc aagcgatcct ccctccttgg cctctcaaaa 000560
000561 tgttgggatt ataggcgtga accactgtaa ccagccTCAA GACAGGCTTT CTAAGACACA AGATTCCGCG TGTCAACTGT 000640
000641 ATCCACGGAA ACCATTCCTT AGTTTATTGT CACCGCCATT CCTAACTCTG ATGTGAAAAT CCCTGCGTTC ATCAACATAA 000720
000721 CCCAGTTAGG GTCGCACTCA TCACGGGGCC CCCATTGCCT CTGGCGCACC CCACGACTGA CATCTGCGGG GCCTTCGCGC 000800
000801 TAGGCTTCGA GTTTCAGCTT CCGCACCAGG CCTGCCTTTC TGCAGGGGCC AGGGTGGGGG TCGTGTGCTG ATTGGGCCCT 000880
000881 CTGAACCGCC ACCGCTGCAG AGGGGCTGTT CCTTCCGTCA CATCCCTTGT GCCCGAATCC ACCCTGTGTC TTCTCTTTTC 000960
000961 TCAGCAGGAC ATTTTAAAAG CCCAGACCCC CTCCTTACAG AGCAAATGTC CAGGCTTCGG AGGTCACTGT CACATCCCAA 001040
001041 GAACCCCCTT CACCAGGTGC CACTCTTGAG ACTGGACTGA AGCCCCCTGG AGAGTTCCAC TTGCCTTTGT CCTGCTGCCT 001120
001121 GAGATGAGGG CATGGACAGC CGGGTACAAG ACGGGACAGG CAACCTCGCA GTGGTGGTAA CCCTGTGCAT GAACCCTGGG 001200
001201 CCTGGCACGT GGACCTCCTG TGACCGTCCC CACAGGCCCG TGAGGCTGAG CTTGGCACTG CCCAAGACCA CACAGTCCAT 001280
001281 GCGCAGTGGA GCTGGGGTCC AGGCTGCCCA CCAGGGCAGT GACTGCAATG GTGGCAGCAG GGGACAGTCA CCATGGTGAG 001360
001361 CTCAAGCCAG GCGCTGCACT GACCTTGAGG GAGGGCTCCA TGCTTCCCCT TCCCACAGCT GCAGTGAGGG CTAGGAGAGC 001440
001441 AGGGTCGGCT GCAGGCTTGA GTCCTGGGGT GCCTCTGGGC TGACGGGCCC TGCCTGACCT GCTCCTCCAG TGCCCCAGCC 001520
001521 CTGCCCCACC CACGTCCCCT CCTCTCACTG CCCCCTGGCC CACTCCGCTG CGGTCTCAGT Gccttcccag gctgggcatc 001600
001601 atctgatggg aggaaaatga gggccccaga ctctgtgtca tcctggcagg acccctcccc tccCATGGCT TTGagcccat 001680
001681 gagatggcct tggacaaagc ggcaatgggc ccttcctgag acacagtgcg gccatctact gggaaactgc ccagtgtgac 001760
001761 tctgatgact gtgatgtgaa tcccacagca aagttgagca gtgcgcaacc tgggctactg cacctggcag ccctgGCTCC 001840
001841 Tcctcctctg cctcttcctg ctccttcatt ctcccccaga gctctaattg tcactgagat tttatgtttc gtttaacaaa 001920
001921 tgactgtctc cccgcttgaa cagaacctcc atggggggag ggaagagtgt ctgttgtata aatagttgta tttcagtgca 002000
002001 taaaacagtg cctgcctcaa agggaggact cagtcaatat ctgttgaatg aatgaatGAT TGCCTGGGTC AACGAATGAA 002080
002081 TGGCTGAATG AATGATTTCT CCTTTCCCTC GGCACTGTCT GGAGTCCCCA GGACAGGCAT GGGCAGCAGT CGCTGGTCTG 002160
002161 TGGCCTGTCC CACTGGACTT GGGGTTCTCA TGCTTGGTCT GGGCGGAGAT CACCCACCAG GCTCCCAGGT CGATCCTCTG 002240
002241 CTCATGGGAA GCTGCGTCCG GCCCAGCTGC CAGGAGCTCA CTGCAGGGTG GAGGGAAGAG CAGGGACGAT CTGCGAGCGC 002320
002321 CTGAACACCA CACAAGAGCC GAGGAGCCGC TGCTTAAAAT GCAGGCGTTG AGAGGAGTTT CGCCTCCTTT TTTGACTTGA 002400
002401 ATATGAGATT TCCGAGCAGC CATGACGAGT TGGGTTGGTG GAAGTGGGGA GTCCGTTCCT CAGTCAGATG GAGGGGGTCC 002480
002481 CCTTGGATCT CCTCTCGGGG CTTGAACCCT GATACTTCAA G
[back to top]

Predicted Small Protein

Name NONHSAT032029_smProtein_2087:2323
Length 79
Molecular weight 8050.0469
Aromaticity 0.0512820512821
Instability index 64.508974359
Isoelectric point 5.56341552734
Runs 7
Runs residual 0.0439337085679
Runs probability 0.0332727685669
Amino acid sequence MNDFSFPSALSGVPRTGMGSSRWSVACPTGLGVLMLGLGGDHPPGSQVDPLLMGSCVRPS
CQELTAGWREEQGRSASA
Secondary structure LLLLLLLLLLLLLLLLLLLLLLEEEELLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLL
HHHHLLLLLLLLLLLLLL
PRMN -
PiMo -