NONHSAT032643

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT032643

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

5926 nt

Genomic location

chr13-:27819766..27825691

Exon number

1

Exons

27819766..27825691

Genome context

Sequence
000001 GAggcggggc cgcggcgcgc gccTTACAAG GGCCTGTGGG CTGCCCACGG CGCTGCCTGA GGGAAACGCC AACCGTAAGC 000080
000081 GACTTCTTTC TAGGGAAGAA GATCGTCTCT GAGAACACAG AAAGTCTGTG AGGATATTTT CCCCTCTTGC GAAAGAAAGG 000160
000161 CAACCGGCCA ACACAAGCTG ACACTTGCAT CGTGTCAGAC AGCCCGGAAA GGGGCCTTCA AGGGCGATCA AGAGGACGCC 000240
000241 GTCGTCCCGA GCGTGCTTAC GCCATCCTTT GCGTCACCGC CTTCGCCGGA AGCTGCCTTG TATCCGCGTC TCCGCAGGGA 000320
000321 AAACTGCGGC TGGCGGTGCG GGAAGTGCTA TTAGTAGTTG TTTATTTGTT TGTTTGCAGA AATAATTGCT TGGGTACGAA 000400
000401 GGTCAAACGA GAATGAAGCA AGTATATTAT CTAGTTTGTA TGTCTTTAAA TAGTTTCTCC TCCACACGTC TAAAcatacg 000480
000481 cacctgctag taggtgcgca aatgttaaaa cctctttggg aaagcaatgt ggcaaaatct agtaaaagtt ttcaattact 000560
000561 aaaccccagc actctgctcc tacctatatg tcttgtagaa actttggtaa gtgaacaagg atgtacgtaa cagcgctgtg 000640
000641 ggtagaagca aaaaattaga aacgtccatc aataacagaa taaatacctt atgggatgtt aggatgtagt attatacgcc 000720
000721 aataaaagaa gactgaactc agaaatgtga tgaggcaaaa agagaaagat gtagaaaaat aaatagtatg acaattcata 000800
000801 tacattcaac tctaaaactt gtaaaacaat gctatatatt gcttagttat gcatacatat gtagttaaag aagtcaagaa 000880
000881 atacaagaga atgaaaatca agttgagaaa agcagtcata tctggtaagg aggggacaat aaagggagGC TTTAACTGTA 000960
000961 TTGACCATTA TTAAACCGGG TGTTAAATAT ATGGGTGGCC ATTGTTTTAT TCACTACACC tttaaaaata gatattattt 001040
001041 tcttaatgta gtttatttaa attgagataa tgccatatac ccagcatcca gtttccccta ttattaacat ctcatgctaa 001120
001121 tatggtacat ttgttgcaat taatgaacca atattttaca ctgttattaa ctaaggttca cattttattc agatttcctt 001200
001201 cggttttacc taataccctt tttctgttcc aggattccat ccagaatacc acattacatt tagttatgat gtctccttat 001280
001281 atgcctcttg tggctgtggc agtttctcaa actttcctta cttttggtga ccttgagagt tttgaggagt actggtcatg 001360
001361 tattttgtag gatgtcctaa tcatggaatt tgtctcatgt ttttctcatg attGTATGTA TTTTTAGGAT GCATTTTTAA 001440
001441 AAAGTCAGCT AAGTTAACAA AATCCCTTAT CAGACTGAAT ATAAATAATA TCGTCCAGTC GCTTTTGAAA TTTGCATGTC 001520
001521 TTCGACTCAC TCTCCTGATG CACCTGAAAG TTGTAATTTC TAAGAACTGC GTCAGCACCA TTTTTTAAAT GTGTACATTC 001600
001601 TGTGACCATC GTCATCAGCA CTTAACATCA TTTGCTGAAG AACTTGAGGA GGAATAGGAT TTGGTATTGA TTccttcaat 001680
001681 acgttgactc ctccagactt tcactgtaac cattagccct tggcttctag attgtcttta acttaatttt ctgtagttca 001760
001761 ttattacagt cactctgtta gcactcactt cctcaggtca cttttccttt cccattactt tctttctttc tttgagaggg 001840
001841 aattttgttc ttgttgccca ggctggagtg cagtggcgcg acatcgactc accacaacct ctgcctcccg ggttcaagcg 001920
001921 attctcttgc ctcaggctca cgaggagtag ctgggattac aggcgcccgc caccacacct ggctgatttt tttgttttta 002000
002001 gtagcgacga ggtttcacca tgttggccag gctggtctcc aactcctgac ctcaggtgat ccacccgcct ccacctccca 002080
002081 aagtgctggg attataggcg tgagccaccg cgcctggccc ccatcacttt cttagcacat accgaacctt ggataaatgc 002160
002161 aaccgtgaca gtacctccac agctgagcac cgttgaagaa aaTCTTGTAA TCTGGTGTGA TGACAAATCA GAAACTAGTC 002240
002241 ATCCATGCAC TATATTTTTT TGCACTTGGA AATATTTTTT TGAGCCCATA GAGTGTttta aaaattaaca tatcaaaaaa 002320
002321 aaaagatttc tggcttccct tgagaaatca ggagatctgg cagcatagag ctgatagtct tgatggccac tccactggct 002400
002401 tcccctttag atggggcatt cattcttgag ttccttcatc actcagcctg cttcagtcat ttacctgcct ggctcctgtt 002480
002481 ggcatttgtg tttttagcct ctCCCAtaaa ttcacgacca acccttaaca aatgggtact gtactgttta gcatccccac 002560
002561 tacagttccc cagttaattt gcttacctgc tgtcAaaaaa aaaattaagc ttttacataa ttaaagttag ttttattcag 002640
002641 aagtctcact gaggactgta gaccaaggtt tataccctga gggcagttct ttcacagggc tccaaagtgg tccctcagcc 002720
002721 cattgcttct atgtaggttg tgggggttct gtatgtgtga aatctcatta aagtttgggt gtaagagtac atcagtttat 002800
002801 agattactaa agtaatttgg ttatagattg tagaagcata atcactaacc ctgtcagaca tcttcatgta ggaaaaggca 002880
002881 aggtcaagtt catttactgt ttcaggaacg ttgtaactca ggcgagtgac acggggggcc gtgtgctcta tcctgtttta 002960
002961 agattcttcc tgaggagctg catttcatca cagtcagggg ttcaagcaga aataagcaaa cctggcttaa cattttctat 003040
003041 tttgtctcac aTTATTCTAT TTAAAGATTA TTTCATGTCA TTTCTTTGAT TATCAAACCT TCCTTTCTCC CACCTTTCTT 003120
003121 TCAGCTGATG ACTGCCTCtt tttttgagac tctcttagtc cccaggctgg agtgcagtgg catgatctcg gctcactgca 003200
003201 acctccacct cctgggttca agcaattctc atgcctcagc ctcccaagta gctgggatta taggcgtgtg ccaccacacc 003280
003281 cggctaattt tattattttt ggtagaaaca gggtttcgcc atgttggcca ggctggtctt ggactcctga cctcaagtga 003360
003361 tccacctgtc tcagcctctc aaagtgctgg gattacaggt gtgagccacc acgcccagcc AACTGCCTCA TTTTTATCAG 003440
003441 TGTACAAACA TGCTCCCAGC CAACTCCATC ATTTTTATCC ATGTACAAAC AGGCTCTGGT GTTCCCCACT AAAACCCGCA 003520
003521 ACTCTCTTCT TTCTGATTCT GCTTGATCTC ATATTCCTTT ATAACTACTG CCCCATATGT TCATTTTTCT TCTGTCAAAT 003600
003601 GTAAAAAAAA AGGAGTCATG AAATTTTTGG TTTTGTACAT CAAAAATTGT GAAAGTTCAG CAGTGTCATA CAGTTTAATA 003680
003681 CATAAACACT ATTAtctctt cctcatcttt cattcagctt cagtttcatt tgacttctgt tctagtcatg tcattaaagc 003760
003761 tgctcttgtc agggcatcaa ctgcttatat gttgccaaag ccaaaagaca ttccctgttc tttcctttct tgatctccgc 003840
003841 aaagcactgg actctgttgg ccagctcttc ctccatgaaa cactaccctt cctcaccact ccacagtctg atttgctgat 003920
003921 tttccctcct ctccctgtcc tataaagact acatttccct gggtcttgga gctaggcccc tgctcttctc tttctgtact 004000
004001 gccttcctgg ttaattccat ttactcctat aattttaaat ttcatctctg tgttgcttac taccagattg atttatgtga 004080
004081 ttccagcctt tcctcaagat tgctattcaa cttgatatct attcttggat actctttagc atctcaacat gtccaaatct 004160
004161 TTTATTTTTC TTTTCTTTTT TTTTAactgc tccttgtgga gcagggctat cccataggca gcgtgcctag agtagcCAAA 004240
004241 ATTAATTGTA TGTGGGTACT CTACTGTTTA ACATCCCCAC TACAGTTCCC CAGTTAATTT GCTTACCTTC tgtcaactta 004320
004321 aaaaaaaaat caagctttta cataattagt tttatttaga agtctcactg aggactatag accaacgttt atacccttgg 004400
004401 tataaccttA TGGGATGTGT TGTAAGTTTT TATGGGATGT TTTTAAGTTT TAGATATACt tttttttttt ttcttttgga 004480
004481 gacagggtct tgctctcttg cccaggctgg agtgcaggaa catgatcatg gctcactgca gcctcaacct cctgggctca 004560
004561 agccatcctc ctgcctcagc cactgatgta gctggcatca caggcatgca ccaccacacc tggctaattt gtaaaaattc 004640
004641 ttttgtagat atggagtctc cttttgttgc ccaggctggc cttgaactcc tgagctcagg caatcctccc acattggcat 004720
004721 cccaaagagc tgggattgca ggcgtgaacc cctatgccta gcTCATAAAA CTTTTTATTT TCTgccagat gcagtggctc 004800
004801 acacctgtaa tcccagcagt ttgggaggcc ggggcaggca gagtgcttga gcacaggagt tcgagaccag tctgggcaag 004880
004881 atggtgaaac cctgtctcta caaaaataca aaaattagca gggtgtgatg gtatgcgccc atagtcccag ctgcttgcgg 004960
004961 ggctgaagca ggagaatcac ttgggcccag aggttgaggc tacagtgagc tgtgttcatg ccactgcact ccagctggag 005040
005041 cgacaaagtg aaactttgtc tcaaacaaga aaacaacaac aaaaaaactt gatttttacc ctgaagcctg tttctgctcc 005120
005121 aatattttcc attcagtaca tagcataatc aagaaacctt ggttttgcct ttaagtttcc ctttatccct tccgtatgga 005200
005201 atccattgga aagttttgtt ccagttctga ttgtaaaata ttaatatatt aatgtatctc cagctgacct acctcttccc 005280
005281 atctctgtgg ccacgccact aatacgtctt attctgaact acagcaatgg catctttatg gtcacttttt tttcctctct 005360
005361 tgcccctgtt ctatccattt cctatatagt ggccagggtg atcttttaaa aatataaacc tgattatatc acacccttgc 005440
005441 ttacagccct ccacaggctt tctgttgctc ttagaataaa atctaaattc cttaccttgt cttacaaagt cctgtataaa 005520
005521 ctagatcgtg cttatctttt cagattcctg tctccctcac tttcttgtgt ctctctctgc cttcttcaat tccgtaaata 005600
005601 cttcaagttt tttctagtct tgggatcgtt atgcatgctg ttccctttgT TCTTCAGTAG CTTGATCTTT CTCATCTTCT 005680
005681 TGATTCCCGA AAGAGGCTTC CTAAGAGAAG TGATGCCCAA GACATTAAAA CATGAATGGG CGTTAGATGA AGACAAAAGA 005760
005761 GCATTCCATC GTAGAAGACA ATGTAGCATG TGACGGTGAG TACAAGCAGT GTGGTGTTGC CCATGCAAGA CAAGAGTGAT 005840
005841 GGGAAATAAA GCCAAAAGGC AGATGGTGAA GGTTCTTACC AAGGTGCCAA AGAATGCTGA ATCGagcctg tgaggctgga 005920
005921 agcaaa
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Predicted Small Protein

Name NONHSAT032643_smProtein_1121:1369
Length 83
Molecular weight 9588.275
Aromaticity 0.146341463415
Instability index 66.1853658537
Isoelectric point 5.27911376953
Runs 14
Runs residual 0.034830007391
Runs probability 0.0489691372046
Amino acid sequence MVHLLQLMNQYFTLLLTKVHILFRFPSVLPNTLFLFQDSIQNTTLHLVMMSPYMPLVAVA
VSQTFLTFGDLESFEEYWSCIL
Secondary structure LHHHHHHHHHHHHHHHHLLLEEEELLLLLHHHHHHHHHHHHHHHHEEEEELLLLLEEEEE
ELLEELLLLLHHHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHHHH
HHHLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiTTTTTTTTTTTTTTT
TTTooooooooooooooooooo