NONHSAT032643
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032643 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
5926 nt |
Genomic location |
chr13-:27819766..27825691 |
Exon number |
1 |
Exons |
27819766..27825691 |
Genome context |
|
Sequence |
000001 GAggcggggc cgcggcgcgc gccTTACAAG GGCCTGTGGG CTGCCCACGG CGCTGCCTGA GGGAAACGCC AACCGTAAGC 000080
000081 GACTTCTTTC TAGGGAAGAA GATCGTCTCT GAGAACACAG AAAGTCTGTG AGGATATTTT CCCCTCTTGC GAAAGAAAGG 000160 000161 CAACCGGCCA ACACAAGCTG ACACTTGCAT CGTGTCAGAC AGCCCGGAAA GGGGCCTTCA AGGGCGATCA AGAGGACGCC 000240 000241 GTCGTCCCGA GCGTGCTTAC GCCATCCTTT GCGTCACCGC CTTCGCCGGA AGCTGCCTTG TATCCGCGTC TCCGCAGGGA 000320 000321 AAACTGCGGC TGGCGGTGCG GGAAGTGCTA TTAGTAGTTG TTTATTTGTT TGTTTGCAGA AATAATTGCT TGGGTACGAA 000400 000401 GGTCAAACGA GAATGAAGCA AGTATATTAT CTAGTTTGTA TGTCTTTAAA TAGTTTCTCC TCCACACGTC TAAAcatacg 000480 000481 cacctgctag taggtgcgca aatgttaaaa cctctttggg aaagcaatgt ggcaaaatct agtaaaagtt ttcaattact 000560 000561 aaaccccagc actctgctcc tacctatatg tcttgtagaa actttggtaa gtgaacaagg atgtacgtaa cagcgctgtg 000640 000641 ggtagaagca aaaaattaga aacgtccatc aataacagaa taaatacctt atgggatgtt aggatgtagt attatacgcc 000720 000721 aataaaagaa gactgaactc agaaatgtga tgaggcaaaa agagaaagat gtagaaaaat aaatagtatg acaattcata 000800 000801 tacattcaac tctaaaactt gtaaaacaat gctatatatt gcttagttat gcatacatat gtagttaaag aagtcaagaa 000880 000881 atacaagaga atgaaaatca agttgagaaa agcagtcata tctggtaagg aggggacaat aaagggagGC TTTAACTGTA 000960 000961 TTGACCATTA TTAAACCGGG TGTTAAATAT ATGGGTGGCC ATTGTTTTAT TCACTACACC tttaaaaata gatattattt 001040 001041 tcttaatgta gtttatttaa attgagataa tgccatatac ccagcatcca gtttccccta ttattaacat ctcatgctaa 001120 001121 tatggtacat ttgttgcaat taatgaacca atattttaca ctgttattaa ctaaggttca cattttattc agatttcctt 001200 001201 cggttttacc taataccctt tttctgttcc aggattccat ccagaatacc acattacatt tagttatgat gtctccttat 001280 001281 atgcctcttg tggctgtggc agtttctcaa actttcctta cttttggtga ccttgagagt tttgaggagt actggtcatg 001360 001361 tattttgtag gatgtcctaa tcatggaatt tgtctcatgt ttttctcatg attGTATGTA TTTTTAGGAT GCATTTTTAA 001440 001441 AAAGTCAGCT AAGTTAACAA AATCCCTTAT CAGACTGAAT ATAAATAATA TCGTCCAGTC GCTTTTGAAA TTTGCATGTC 001520 001521 TTCGACTCAC TCTCCTGATG CACCTGAAAG TTGTAATTTC TAAGAACTGC GTCAGCACCA TTTTTTAAAT GTGTACATTC 001600 001601 TGTGACCATC GTCATCAGCA CTTAACATCA TTTGCTGAAG AACTTGAGGA GGAATAGGAT TTGGTATTGA TTccttcaat 001680 001681 acgttgactc ctccagactt tcactgtaac cattagccct tggcttctag attgtcttta acttaatttt ctgtagttca 001760 001761 ttattacagt cactctgtta gcactcactt cctcaggtca cttttccttt cccattactt tctttctttc tttgagaggg 001840 001841 aattttgttc ttgttgccca ggctggagtg cagtggcgcg acatcgactc accacaacct ctgcctcccg ggttcaagcg 001920 001921 attctcttgc ctcaggctca cgaggagtag ctgggattac aggcgcccgc caccacacct ggctgatttt tttgttttta 002000 002001 gtagcgacga ggtttcacca tgttggccag gctggtctcc aactcctgac ctcaggtgat ccacccgcct ccacctccca 002080 002081 aagtgctggg attataggcg tgagccaccg cgcctggccc ccatcacttt cttagcacat accgaacctt ggataaatgc 002160 002161 aaccgtgaca gtacctccac agctgagcac cgttgaagaa aaTCTTGTAA TCTGGTGTGA TGACAAATCA GAAACTAGTC 002240 002241 ATCCATGCAC TATATTTTTT TGCACTTGGA AATATTTTTT TGAGCCCATA GAGTGTttta aaaattaaca tatcaaaaaa 002320 002321 aaaagatttc tggcttccct tgagaaatca ggagatctgg cagcatagag ctgatagtct tgatggccac tccactggct 002400 002401 tcccctttag atggggcatt cattcttgag ttccttcatc actcagcctg cttcagtcat ttacctgcct ggctcctgtt 002480 002481 ggcatttgtg tttttagcct ctCCCAtaaa ttcacgacca acccttaaca aatgggtact gtactgttta gcatccccac 002560 002561 tacagttccc cagttaattt gcttacctgc tgtcAaaaaa aaaattaagc ttttacataa ttaaagttag ttttattcag 002640 002641 aagtctcact gaggactgta gaccaaggtt tataccctga gggcagttct ttcacagggc tccaaagtgg tccctcagcc 002720 002721 cattgcttct atgtaggttg tgggggttct gtatgtgtga aatctcatta aagtttgggt gtaagagtac atcagtttat 002800 002801 agattactaa agtaatttgg ttatagattg tagaagcata atcactaacc ctgtcagaca tcttcatgta ggaaaaggca 002880 002881 aggtcaagtt catttactgt ttcaggaacg ttgtaactca ggcgagtgac acggggggcc gtgtgctcta tcctgtttta 002960 002961 agattcttcc tgaggagctg catttcatca cagtcagggg ttcaagcaga aataagcaaa cctggcttaa cattttctat 003040 003041 tttgtctcac aTTATTCTAT TTAAAGATTA TTTCATGTCA TTTCTTTGAT TATCAAACCT TCCTTTCTCC CACCTTTCTT 003120 003121 TCAGCTGATG ACTGCCTCtt tttttgagac tctcttagtc cccaggctgg agtgcagtgg catgatctcg gctcactgca 003200 003201 acctccacct cctgggttca agcaattctc atgcctcagc ctcccaagta gctgggatta taggcgtgtg ccaccacacc 003280 003281 cggctaattt tattattttt ggtagaaaca gggtttcgcc atgttggcca ggctggtctt ggactcctga cctcaagtga 003360 003361 tccacctgtc tcagcctctc aaagtgctgg gattacaggt gtgagccacc acgcccagcc AACTGCCTCA TTTTTATCAG 003440 003441 TGTACAAACA TGCTCCCAGC CAACTCCATC ATTTTTATCC ATGTACAAAC AGGCTCTGGT GTTCCCCACT AAAACCCGCA 003520 003521 ACTCTCTTCT TTCTGATTCT GCTTGATCTC ATATTCCTTT ATAACTACTG CCCCATATGT TCATTTTTCT TCTGTCAAAT 003600 003601 GTAAAAAAAA AGGAGTCATG AAATTTTTGG TTTTGTACAT CAAAAATTGT GAAAGTTCAG CAGTGTCATA CAGTTTAATA 003680 003681 CATAAACACT ATTAtctctt cctcatcttt cattcagctt cagtttcatt tgacttctgt tctagtcatg tcattaaagc 003760 003761 tgctcttgtc agggcatcaa ctgcttatat gttgccaaag ccaaaagaca ttccctgttc tttcctttct tgatctccgc 003840 003841 aaagcactgg actctgttgg ccagctcttc ctccatgaaa cactaccctt cctcaccact ccacagtctg atttgctgat 003920 003921 tttccctcct ctccctgtcc tataaagact acatttccct gggtcttgga gctaggcccc tgctcttctc tttctgtact 004000 004001 gccttcctgg ttaattccat ttactcctat aattttaaat ttcatctctg tgttgcttac taccagattg atttatgtga 004080 004081 ttccagcctt tcctcaagat tgctattcaa cttgatatct attcttggat actctttagc atctcaacat gtccaaatct 004160 004161 TTTATTTTTC TTTTCTTTTT TTTTAactgc tccttgtgga gcagggctat cccataggca gcgtgcctag agtagcCAAA 004240 004241 ATTAATTGTA TGTGGGTACT CTACTGTTTA ACATCCCCAC TACAGTTCCC CAGTTAATTT GCTTACCTTC tgtcaactta 004320 004321 aaaaaaaaat caagctttta cataattagt tttatttaga agtctcactg aggactatag accaacgttt atacccttgg 004400 004401 tataaccttA TGGGATGTGT TGTAAGTTTT TATGGGATGT TTTTAAGTTT TAGATATACt tttttttttt ttcttttgga 004480 004481 gacagggtct tgctctcttg cccaggctgg agtgcaggaa catgatcatg gctcactgca gcctcaacct cctgggctca 004560 004561 agccatcctc ctgcctcagc cactgatgta gctggcatca caggcatgca ccaccacacc tggctaattt gtaaaaattc 004640 004641 ttttgtagat atggagtctc cttttgttgc ccaggctggc cttgaactcc tgagctcagg caatcctccc acattggcat 004720 004721 cccaaagagc tgggattgca ggcgtgaacc cctatgccta gcTCATAAAA CTTTTTATTT TCTgccagat gcagtggctc 004800 004801 acacctgtaa tcccagcagt ttgggaggcc ggggcaggca gagtgcttga gcacaggagt tcgagaccag tctgggcaag 004880 004881 atggtgaaac cctgtctcta caaaaataca aaaattagca gggtgtgatg gtatgcgccc atagtcccag ctgcttgcgg 004960 004961 ggctgaagca ggagaatcac ttgggcccag aggttgaggc tacagtgagc tgtgttcatg ccactgcact ccagctggag 005040 005041 cgacaaagtg aaactttgtc tcaaacaaga aaacaacaac aaaaaaactt gatttttacc ctgaagcctg tttctgctcc 005120 005121 aatattttcc attcagtaca tagcataatc aagaaacctt ggttttgcct ttaagtttcc ctttatccct tccgtatgga 005200 005201 atccattgga aagttttgtt ccagttctga ttgtaaaata ttaatatatt aatgtatctc cagctgacct acctcttccc 005280 005281 atctctgtgg ccacgccact aatacgtctt attctgaact acagcaatgg catctttatg gtcacttttt tttcctctct 005360 005361 tgcccctgtt ctatccattt cctatatagt ggccagggtg atcttttaaa aatataaacc tgattatatc acacccttgc 005440 005441 ttacagccct ccacaggctt tctgttgctc ttagaataaa atctaaattc cttaccttgt cttacaaagt cctgtataaa 005520 005521 ctagatcgtg cttatctttt cagattcctg tctccctcac tttcttgtgt ctctctctgc cttcttcaat tccgtaaata 005600 005601 cttcaagttt tttctagtct tgggatcgtt atgcatgctg ttccctttgT TCTTCAGTAG CTTGATCTTT CTCATCTTCT 005680 005681 TGATTCCCGA AAGAGGCTTC CTAAGAGAAG TGATGCCCAA GACATTAAAA CATGAATGGG CGTTAGATGA AGACAAAAGA 005760 005761 GCATTCCATC GTAGAAGACA ATGTAGCATG TGACGGTGAG TACAAGCAGT GTGGTGTTGC CCATGCAAGA CAAGAGTGAT 005840 005841 GGGAAATAAA GCCAAAAGGC AGATGGTGAA GGTTCTTACC AAGGTGCCAA AGAATGCTGA ATCGagcctg tgaggctgga 005920 005921 agcaaa |
Predicted Small Protein
Name | NONHSAT032643_smProtein_1121:1369 |
Length | 83 |
Molecular weight | 9588.275 |
Aromaticity | 0.146341463415 |
Instability index | 66.1853658537 |
Isoelectric point | 5.27911376953 |
Runs | 14 |
Runs residual | 0.034830007391 |
Runs probability | 0.0489691372046 |
Amino acid sequence | MVHLLQLMNQYFTLLLTKVHILFRFPSVLPNTLFLFQDSIQNTTLHLVMMSPYMPLVAVA VSQTFLTFGDLESFEEYWSCIL |
Secondary structure | LHHHHHHHHHHHHHHHHLLLEEEELLLLLHHHHHHHHHHHHHHHHEEEEELLLLLEEEEE ELLEELLLLLHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiTTTTTTTTTTTTTTT TTTooooooooooooooooooo |