NONHSAT032703
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032703 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2133 nt |
Genomic location |
chr13-:29274201..29278694 |
Exon number |
2 |
Exons |
29274201..29275718,29278080..29278694 |
Genome context |
|
Sequence |
000001 AGGCTCTTGC AGGAAGCATT GCTTGTTAGG AGCCATCCTG TGCTTTCAGG TGTCACAGAT TAGCATGGGG TTGGAGGGTG 000080
000081 GGAGACAGCA TCCTGAAGAG CAGGGGTAGG TGTGGCTTTG CCTGGGGCTG TGGCAGAGAG GAGAGACATG CAGTTATCAA 000160 000161 AAGAGTCAGC TGCACTGTCT TTTTAGCTTT GCCCTGTGGA CACTGGAACT CAGCTATTTG GAGTTTCCAA CATCTCTCAC 000240 000241 ATCAAGTCCA AGGAGAACCT TTCCCTTAGT TTCCTCAGCT GCAGAATGGG CTGCTGACTT CTCAGGGACT TTGAGGGAAT 000320 000321 AACTTTCATT TCATTCACCC AGCAGTGCCC TCATGTTTAC TGTTTTCAAT GAGTAACAGT TGTCTCCATT AGTTTGTGTT 000400 000401 TGTTGTTTTG TAATTCTGCC TTTTTTTTTT CCTCTCTCTC TATCCCTACT CCAAACAGGT ACCCTGTTTG CTTGTATTGC 000480 000481 TTTCTTAGAA ACACTTGGAG GAGTCACTGC AGTTTCTACT TTTAATGGAA TTTACTCAGC CACTGTTGCT TGGTACCCTG 000560 000561 GCTTCACTTT CCTGCTGTCT GCTGGTCTGT TACTACTTCC AGCCATCAGT CTATGTGTTG TCAAGTGTAC CAGCTGGAAT 000640 000641 GAGGGAAGCT ATGAACTTCT TATACAAGAA GAATCCAGTG AAGATGCTTC AGACAGGTGA CTGTGATTTA AACAAACAAA 000720 000721 AAAAATCTAT GAATGCACAT ATCATATACC ATGACTTCTG AAGACTATAA ATGAATTCCA CAATCAGTGC TTCACTGAGA 000800 000801 ACCAATTTTA CCTATCTTTT CTTCTAAACT GAACAGTCAG AGAGACAGCT CCTGGCTTTA GCTTCTTGTG GTACCACGCA 000880 000881 CTTTGAGCAC TTTGTGCGTA TCATGCAATA TACTTGCAAT ACACAGAACA AATTTCAAAT ACGCCTCACT TTTAGACTTA 000960 000961 GAAGAGAAAC ATTAAAACTT AAGGGTGTAA GGAGGGATCA AGAAACTTGA TAAGGTCAAA AGCAATAATC TCTCTGACAT 001040 001041 ATTCCAGGCT CTTACACTGA GACCAAAGAG AAAtctttac ctcagtttct tcatcagcag aatgggTTTC TGGCCTCTCT 001120 001121 CAGGGATAAT TTTGAAGGCA TAATGAAAAT TATGATGAAT CACTCATTGG TAGGAAAATA ATGATATAAG TTTCAAATAT 001200 001201 GTATGATTTT ACCTATACTT GGTAATGCTT TATTTTATAG AGCCTGTTAA GCTGCTATTG ATAGTCGGAG CTTATATACT 001280 001281 GTGACTTCTG AAGACTATAC ATGAATTCCA CAATCAGTGC TTTGTTGATA CAAAATCCTT AAAAGGGAGG CACTTTAAAG 001360 001361 AATATGTATT TTTCACTTTT CTTAATATGT TTCATCGGTG ACAGGCATGA TAATATTTCT ATATGTAATG GGTAATTGGG 001440 001441 AAAAAATAGA TGATAAATAA AATTGCTCTA AAGAAGTTAA AAAACTGAAT GAACAGCTAA TACTGGTATA AAGTAACTAA 001520 001521 TGTTTGGAGC CAACATTTGT TCCTTGTGTC AGCAAAAGGA TATTCACATT CCATGATCCC TGGCTGAGAA TTCTGCCTCT 001600 001601 AGTCTTTCTT ACCCAGCTGT TGTCTATCCT TGTTCAATTA TAAATACTGC TAAGGGCATT TTTAAAATAC GATCTTGTAC 001680 001681 TCCTTAAATT TGAATCCGTC AACACGGTCA CTCATAGGAA AATGATCAAA CAAGCAAGCC AGTCATGATT TGACTccttc 001760 001761 ccatctcatt tcttactgcc ttacgctcat cctgaggtcc accttggtct ctaaaaacac catgtgttct catgcctcca 001840 001841 tgtcttttca cacactgttc catttgctct tcctcccaca ttacattgaa actttcaagc ctcagtcgaa acattgcttc 001920 001921 ttctggatag cagccttctt gacatccctc ctcactcccc agtccctaca gggcttccat agctctttgt gtgcacttcg 002000 002001 atcccagcat tttccatcga cttgtaattg tttctgctac ctgacaatca tcgccttgag tactgggaca acctttgatt 002080 002081 actcattata tcctcaataA ATATTTGTTG AACTAAACTA AATGACTACA AAA |
Predicted Small Protein
Name | NONHSAT032703_smProtein_524:760 |
Length | 79 |
Molecular weight | 8899.4492 |
Aromaticity | 0.115384615385 |
Instability index | 49.7 |
Isoelectric point | 8.38775634766 |
Runs | 14 |
Runs residual | 0.0458098811757 |
Runs probability | 0.0459282812225 |
Amino acid sequence | MEFTQPLLLGTLASLSCCLLVCYYFQPSVYVLSSVPAGMREAMNFLYKKNPVKMLQTGDC DLNKQKKSMNAHIIYHDF |
Secondary structure | LLLLLHHHHHHHHHHHHEEEEEEEELLLEEEEELLLHHHHHHHHHHHHLLLEELLLLLLL LHHHHHHHHLLEEEEELL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiii |