NONHSAT032733

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT032733

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1108 nt

Genomic location

chr13-:30050652..30061887

Exon number

3

Exons

30050652..30051076,30059006..30059443,30061637..30061887

Genome context

Sequence
000001 GTGGCAGCCC TCGGAATCAC GGGGAGGTCA CTGCCACAAC CTGGCTCTTT GTAGGGGGGT CCAACTCCAG GCAGGGGATC 000080
000081 ACTGCCTGAG GTACCTCTTT AGAGTCCTGA GTGTGGCTCC TGGACCATCC CCTTCCCACT GCTTGTCCAC GCGCTTGCAC 000160
000161 CGCTATGAGC GATGACGGCA AAGGAAAAGA AAAGCGTCCT CCCTACGAGG TGGTCTGTTT CCCAGTGGCA GGGGGAGCTA 000240
000241 CGGTACACAA GCACAGGTTC ACATTTATGA AGCAGCCAAT AAGAATTCCC AGCCTGAGAG GACCTTGGAA CCAGAAGGAA 000320
000321 TTGGAGGAGA TTTAAACAAG CTGACCCAAG GAAAGCACAA GATCTTTCTA TGCATTGAAG ATCACCAAAT CAAAGATAAA 000400
000401 AGTGCTCGAC CATTATGGCC TATGGCAAAC TCGGGCTGGC TGAAGCATCC TTCTCTTCCA TTTAGAACCC TGGTGAGGCC 000480
000481 CCTTAGACCA CCACTGGGCT GTCCTCCTCC CTCCTCAGAG ACAGAGTTCT GGGCTGGGCC ATGGAGGTGT CTGTCAACAC 000560
000561 GGCAGTAGTC CTCGTTCTAT GGAAAACCAG CTGTTCCCTG TGACACGACT CCATTCCCGC AGCTGCCTGC TATTCAGCTG 000640
000641 GGCTGACGGA CAGCAGAGCA CAGGGTTGGA AGACCACCCT CTCAGACAGG TTTACCAAGA AGCTCACTGA GAGGCGACAC 000720
000721 AAACGGCCAA GAACATGAAA AGACGGTCAG TGCCCTTGCA GATGGAAGCA GGCAATCATT TTTCACCTGC AAGGCTGATA 000800
000801 AAGATGAAAT GTTCTGATAA TACAGGAAGA GTATAAGGAA ACTGTCACTC GATGGACTCC AGGTGAAATA TAACTAATCC 000880
000881 AGCTGCCTTG GAGGGAAAAG ATATCTTTCA AAATTGAAAT GACAGGAATG GCAGCATTAT GGGTGGGAGA TAAAGAATCT 000960
000961 GGGTTTCTTT CAGGGGTGAT GAAAATGTTC TAAAACGGAT TGTGGTGACA GTTTTCCACA ACTCGGAATA TACTGAAAAC 001040
001041 CACCACATTG TATACTTAAA TGGGTGGGTT GTATGGTATG TGAATTATAT CTCAATAAAA TTTTTACC
[back to top]

Predicted Small Protein

Name NONHSAT032733_smProtein_164:334
Length 57
Molecular weight 6437.3936
Aromaticity 0.0892857142857
Instability index 60.5839285714
Isoelectric point 9.35845947266
Runs 11
Runs residual 0.0431303669009
Runs probability 0.0489634019046
Amino acid sequence MSDDGKGKEKRPPYEVVCFPVAGGATVHKHRFTFMKQPIRIPSLRGPWNQKELEEI
Secondary structure LLLLLLLLLLLLLEEEEEELLLLLLEEELEEEEEEELLEEELLLLLLLLHHHHHLL
PRMN -
PiMo -