NONHSAT033175
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033175 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2258 nt |
Genomic location |
chr13-:35499971..35502213 |
Exon number |
1 |
Exons |
35499971..35502213 |
Genome context |
|
Sequence |
000001 TCAACATTCA AAACTGACCA AGGAACCCCA CTAGCTAGAC ATGTGTAGTG ATTACCAGCA AACCTCAGGC CAGGCTCACT 000080
000081 CAGGACTGGC TACCCCCAGG AAGGAGGGGT GGCATGCCAG TAAGGAACCT GGCCTCAGCA GCAAGTTGTT TTTTTCTGCA 000160 000161 AGTATCGTGT ATTTCTTCTC CAACCAATTT TGTTCCCCTT GGTTCCTGGG AACCATTATA TCGTTAGGTT AATGGACCAT 000240 000241 TGGTTTATCC ACCTGTATGT TGCCTGAATT TTGGCCATTC AACCATGCAT TCCTGGTGAT TGGGTTTACA AGTACTAGTT 000320 000321 TCCTAAGTCC AACATCATGT TCAGATATCT CGTGACGATA AATTGGTGTA GTAACCATGG TATGTCAGCA AAGAGATGGC 000400 000401 CCCACTCATT AAAAATATGT TGGTATTGGA GGCTTCAAAA ACTTGTATAT TTGTTACTGA TATATAGAAC AAATAAATGG 000480 000481 CCAAATACAA AATTGTGCAG AACCCAGATT ATCTAGTATC TAATAAAGAA TTAATAAAGA ATATGTATTA ATGTAGATGT 000560 000561 CTTTATTTAC ATATTAATGG CTTTTTTCAA ATTGGCCAAA TTTTTCAAAA CAATTACATA TTAAAAATTG AGATACATGG 000640 000641 AAATTCTAAC AATAGATTTA TAGTCATTCT TGGGGTGGGC ATTAACACTT TTTGGTAACT TCTGTAAGTT AATTATAGTT 000720 000721 TAACTTCCTA ATTAATTAAT TCTGTATGTT AATTTATAGT TTAACTTCCT AGACGCTTTG GTGTCTTTTT TTACCCTCAC 000800 000801 TTTAAAATAC ACACAATAGT TTAAATATAT CACATTTGGT CAAAAGTTCA AATTATTTTA TTATTTAAAG CATGTAGAAA 000880 000881 AAATATAATA GTTAAAATTC CTGTGAAAAA TTCTAATACA GAGGAATCAC ATGGCTATGT TTGGAAAGAT AATATTTCTT 000960 000961 TAAAAATGTG TTGTTTTTTA TGTTTTATGT TTGCGATAAG CATTACTGAA GTTTGATTGA AGAACTTCAT GATTTTTATG 001040 001041 TTTTACTTTC TTGTATTGAG AAATAGTGGT CCATTGTTGG GCTGTATTTA AAATTAATGT GTATAAAACA AGAAATATTT 001120 001121 AATTAGAGTT ATTAATTTTC CACATTTAAT ATGTGTATTT GACCTAAATC AGTATCTTCT ATCATATCAG CCTCACATAT 001200 001201 AACAAGAATA ATCGCAAGGA CAACAACAAA TTTGAATGTT TCCTTTGTGC CTATGCTCCT ATCATGTTAT ATTCATTCTT 001280 001281 ATAAATCTAA CAACTAACAA TTAATTTGAA GTTAGACACA CAGGATTTAC TCATCAGTAT TAGAGCATTC ACTGCTAGCC 001360 001361 AAGAAGGTTA CTATCCCTGG TGCTGAAACT GCTCTGTGTA GTCCTTGTGG TTGAAGAATT AAAACAGTTT CTCTTAGACA 001440 001441 TTTCCTTTCA TTGAAATTAT GAATTGGATA AATGTTCATA CCTTAAAGGA AGTATTAAAT TTCACATATG TTAACATCTT 001520 001521 AATTAATGTA AGATTAATAT TCTACTTATG ACTATGTTTT AGTATTGAAA AATGAGTTTC TGATGAGTTT CATTAGTTTC 001600 001601 TAGAGAAAAC AATGGTTTAA AAAATTTCAG TACATAAGAC ATTGAGGAGT CTATGAATGT TCCAGAAATC TGAAAACATA 001680 001681 TACCACTAAT CAAAGTTTCT CCATTCATGT TGACTAGCAT TTGCCTTAGG TGTCAGAATT AATGGATTTG TGTTAAAAAT 001760 001761 AAACACCTGA AATCTAATTC CCTAGCTGCA TTATAACACA CTAGATTACA AGTACTAAGC TTTTATTTAA TGCTTATAAC 001840 001841 GGCTTTAAAT TGTAGCAAAA TGGGCTTCCC CCAAGAGGAC TGCTTTGTTG ATCCTAAGAT GGGGTCATAA GCCAGAAGTT 001920 001921 AACTATGCTT TCATATATTC TTGTAAGTAG AAGTACAGTG TTGGTGTAAA TTCTCCTTAG ATGGATAGGT AAGCCCAGAG 002000 002001 GAAATAATGG TCATTGGCAC CATATGACCG TATGCAATTC ATATGCATAT TTATATCAAG AAAAGAACAT TATAGGTCTG 002080 002081 GTGAGACCCT ATTTTTTTCT GACAGTGTCA TCTGTATTTA CGTGTCTATT TCGGGAATTT GGAAGTCAAG GGATTCTATG 002160 002161 CTGGATTGTG AAGCATCTGT TTCTGCTTGA TGTAGCTACT CAATTTTGTA TTCTTGACTA ATAAAGTCAT AAACATAATG 002240 002241 CAAAAAAAAA AAAAAAAA |
Predicted Small Protein
Name | NONHSAT033175_smProtein_113:226 |
Length | 38 |
Molecular weight | 4089.7159 |
Aromaticity | 0.135135135135 |
Instability index | 69.3378378378 |
Isoelectric point | 7.82232666016 |
Runs | 5 |
Runs residual | 0.0446317877511 |
Runs probability | 0.0490019431195 |
Amino acid sequence | MPVRNLASAASCFFLQVSCISSPTNFVPLGSWEPLYR |
Secondary structure | LLHHHHHHHHHLEEEEEEEELLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |