NONHSAT033191
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033191 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1983 nt |
Genomic location |
chr13-:36796150..36798129 |
Exon number |
1 |
Exons |
36796150..36798129 |
Genome context |
|
Sequence |
000001 CGGGTTTTAG CATGTATAGG AGATTCCAAA GCAGAGTTAC CTATATCAAT TTTAGTACTA TTATTTTCAT ATTCTACTGG 000080
000081 ATAAGAAATT ACTTATTTGG AACTAAGAAT TATTCTTGCA ACAGAAGCTT ATCAGTAACA CTATTTGATT GCTTTTTGCT 000160 000161 GTGTGCACAG GTGAGGACCT GTCTAGACTT CTATACTATG TACATTGTAT TAATTTTGTT CATAAATTAG GTAATTGAGT 000240 000241 TATAGATACT AATTTAATAT TTAAAAAATT TAGATTGTTG ATTTTAAATA TCAGAATAAC CAAACTGTAA CAACAGTGCT 000320 000321 GGGATTTTGG TATTTAAAAA GGGCAGAGTA TACCAGAATA TTGAAAACTG GTATTGAAAT CACTACATAT AATTGAATTA 000400 000401 TGAAAAAGTA CCTTTAAGAT AATAAAGCAC TACATAAATA TGAGCTCATA TCATATATTT GACAGTAGGG CATTATTTTT 000480 000481 ACAGGTTAAC ATTCAATTAA TCTGACTATG AATTAGAAAA ATCTTGAATT TGTAGAGTTC ATTTAACTTT ATTAAAGCAA 000560 000561 TTTGCCAACT CAGCTACAGA AATACAGAAA ATATTACTAT CTGGAGAACT ACCCAGTCGT AAGTTTATCA TCGTTGAAAT 000640 000641 TGCTTAAGCA GAGATTAGGT GACCATTCCT CAGGAATAGT ATACGAAGGA TTCCTGCAGT GGTGGAGGTG TGTATTTGAT 000720 000721 TGCTGTCAGT GTGCCTTCTG ATACTAACAT TCTGTAATTC CCTGCTCATT TATCACACAA CAAAACATGA GACAAAAATA 000800 000801 ACTCCATAAA ATATATGTTG ATTATACCAT ATAGGTTGTA TACATATAGA CTATAAATAT GAGCTTTCAA AAACGTTTTG 000880 000881 CCATTAGCTA ATAACTAACA AAATCAGTTT TATTAGGGTG GTTTTGTGTT TATATTGCAT GGTGTTCAAT GAGCTTATAT 000960 000961 CTGTAGTTTT CATCAAATGT GGAAAATTTT GGGCCATTTT TGTATTATTT TTCTGCCCTT TCCTGTCCTC CTGGGACTTT 001040 001041 AATTACAGCC TGTTGTAAAC CACTTGATAT TGTTCCTTTT GGTTCTTTTT TTATATCTTC TGTCACTGTA TTTATGTTTT 001120 001121 CCTTTAAGTA ATTGGATAGG CATATAATGA CTTTTAGCAT ACTTACACAG TATCTTTTTC ATTTCTCAGT CTGTTTCTGG 001200 001201 TGACTGATTT TTCTCCTGGT TTCGGGTTTC ATTTTCTGCT TCTTGTAATA TCTACTAATT TTATATTAGA TGCCAGGCAT 001280 001281 TGATGATTTC ACATTGTTGG TTATAGATTT ATTCTTATAG GCAGTTAAAT TAATTGCAGT TCAGTTTCTT CTTTTCAAGC 001360 001361 CTTTGTTAGG GTAAGTATAG AGTGAGCTTC ACCCCACAGA GAGTTTAACA CCATTTCTAA GGCATAGCTA TTGTGGGATC 001440 001441 ACTAGAAAAT TCTGTGAGTG ATCAGCTGGG ACACTCAACA CTGGCTAGTT GGACCTCAGA TGCCTCACAG GCCTGTGTGG 001520 001521 CACTCTGCTT GACCTCGTAG AGTTTTGCTC TAGGCTTACA TGTCTTAATA TCCAGCCACC TCTCAAGGGG CTCCTATGCA 001600 001601 GATTTCTGGA ATTCTGTTTT TACATATCTG TTAGCTCTCT GGTACTCTGC TCTGCAACTT CAGCCACTTC AGCCTCCCTG 001680 001681 AACTCCAGCC TCTGTCTTCT CAACTACATG AAACCACCAT GCTTTGTTTG GGATCCCCTA CCCTGCTCTG AGGTCTGTGC 001760 001761 CTGCAGGTAG AAATCTAGAA TGATGGATGG GCCTCACTTC ATTCCTCTCA GGGGTCATAG TCTTAAGGTG CATGTCAATA 001840 001841 TCTGCAGTTG TTTCATATAT TTTTGACTAA TTTTCTGTTT CTTCACAGTA AGAAGCTAAA TCTTTCCCCT GTTACTCTCA 001920 001921 AAGCCAGAAG TAAAGGATAA AGCATTAAAA TAAAAGCAAA GAAAATATTT TAAAATCTAA TAT |
Predicted Small Protein
Name | NONHSAT033191_smProtein_11:229 |
Length | 73 |
Molecular weight | 8845.3828 |
Aromaticity | 0.236111111111 |
Instability index | 47.7697222222 |
Isoelectric point | 9.29949951172 |
Runs | 12 |
Runs residual | 0.0257502027575 |
Runs probability | 0.0334893717246 |
Amino acid sequence | MYRRFQSRVTYINFSTIIFIFYWIRNYLFGTKNYSCNRSLSVTLFDCFLLCAQVRTCLDF YTMYIVLILFIN |
Secondary structure | LLLLLLEEEEEEELLEEEEHHHHHHHHHHLLLLLLLLLLEEEEHHHHHHHHHHHHHHHHH HHHHEEEELEEL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooTTTTTTTTTTTTTTT TTTTTTTTTiii |