NONHSAT033233
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033233 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
2028 nt |
Genomic location |
chr13-:37583634..37588043 |
Exon number |
2 |
Exons |
37583634..37583946,37586329..37588043 |
Genome context |
|
Sequence |
000001 ttatcatagc tccgttatgg tggtgatgtg gtctgcctta ttctgttgtt catttcatga actgggTTCC AAATTCAATA 000080
000081 ATGTGTCCTC CTTTCAGCTC TGTGCTCTTT TGTCCAATCT TTTATATCCA GGGAGATCCC CTCAAGATAA ATGTAACTTT 000160 000161 TGAAATGTTT GGCTTGCAAT TATATACTGA AATGTTACTT CAGACACTAT TTTAGGTGGT ACCAAAGGAT gtcttttgca 000240 000241 gagcaaaagt ttttaatttt gctgaagtcc aagttaacag tatcttttct ttatggaata tcctctagtt ttcatgtctc 000320 000321 ggaactcttt acctagctct aggtcccaaa gattttctcc tgtgtttttt ttctaacagt tttatagttt cttattttga 000400 000401 atccatgatc cattttcagt taatttttgt acaagatgtg caacttaggt ccgtgttttg tttttgtttg tttttgtttt 000480 000481 cctatcagta tccaattgtt tcaataccat ttgttgaaaa aaaagaaaac aacaacaaag aaaaaaaaca gctattcttt 000560 000561 ctgaattgaa ttacttctgc acatttgtta aaagtcagtt gggtctattt gagtgggtct atttctaggt tccctgttct 000640 000641 gtttcattaa tctatgtgtc tctccttcag ccaataccac actgtcttgt tcattgtagt gtcttaaaat tgggcagtgt 000720 000721 tttctcccat accatttttc aaaattgttg tagctaatgt aggttctcta cctttccata tacattttaa agtcatcttg 000800 000801 tctatatcta caaaaacctt gccagcattt ctaaaagaat tgagttaaac ttgttgatca gtttggggga agaactgcca 000880 000881 tctttatgat gtgagtcttc cagtacatga acatagtata tgtccttatc tagaccaaag tcaatgtttt gtagtttttg 000960 000961 gtatacaagc cctgtatatg ttttcttaga cttaagatta atacctaagc ttttctcttt ttttttgagt aattgtgaat 001040 001041 ggtatttttt ttatttcagt tttcacatgt tcattactag tatatatagt gttgattttt gtatattggt cttgttttgt 001120 001121 gccctcttac tggacttact acttctagga gctgttttgg agattgctta gggttttcta ccatatagac agttgtgcca 001200 001201 tttgaaaata aggacaattt tattttttcc tataaaatct atataccttt tatttccttt tcttgactta gtctgctgac 001280 001281 taaaagttcc agcactatgt tTATGTTACA AAGGGTGTTT TAAGCTTTAA AAAATTGTTT CAGTGAAGCT TTATAAAAGC 001360 001361 CTTAGGCGTT ATCTAGGTAG CATTAAACAA TAAATACAGA TGCACTGAAA AATGAAGTTT TCTTTGTTCA AATACCATAA 001440 001441 ATTTATTCTT GCTTATTCTA AATACCTTTG AAGTATTTTC CTTGTTATTC TTTTTACAAG ACTAGTCTAA TACTGCTTTC 001520 001521 TTTCATATAG GAAAAAATAC TGATTTCTTT TCACCAGCTC AAATTTGTTT TTCTTTCTTG TACAAGTCAT TTATTATTTT 001600 001601 TTTATTCAGG GTTCTGAGCA AGGTTCAACC AGTCAAGAAC AGGCCTTATC TGCTCAGCAA GCTGCTGTTA TTAACCTTAC 001680 001681 TGGAGTAGGA AGTTTTATGC AGTCACAGGC AGCTGCAGTT GCGATTCTTG CAGCATCAAA TGGCTATGGC AGCAGCAGCA 001760 001761 GCACAAACAG CTCAGCTACA TCATCATCGG CATACAGGCA GCCAGTCAAA AAGTAAAATG AAGAGAGGCA CGCCAACCAC 001840 001841 TCCAAAATTT TGAGTCTTGC ATTACTTTTT GTTCCTTTTT TAAAAACACA AGAGCACTGA ATCAAAAGAA TTGAGTTTCT 001920 001921 ACTTTTTGTT TTTTTTAATG TGTCAGTATT TTACATTGCT AGATGTACAA ACTTTATACA GAAGCACAAC CTTATCATTT 002000 002001 TTAAATAAAA ACAGGGAAAT GGTTTAAC |
Predicted Small Protein
Name | NONHSAT033233_smProtein_404:568 |
Length | 55 |
Molecular weight | 6622.7733 |
Aromaticity | 0.203703703704 |
Instability index | 40.1296296296 |
Isoelectric point | 8.71063232422 |
Runs | 12 |
Runs residual | 0.0595302619693 |
Runs probability | 0.0387887887888 |
Amino acid sequence | MIHFQLIFVQDVQLRSVFCFCLFLFSYQYPIVSIPFVEKKENNNKEKKQLFFLN |
Secondary structure | LEEEEEEEEELLLHHHHHHHHHHHHHLLLLEEEELEEEELLLLLHHHHHHEELL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii |