NONHSAT033258
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033258 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2886 nt |
Genomic location |
chr13+:38489361..38620549 |
Exon number |
5 |
Exons |
38489361..38489486,38490438..38490565,38571949..38572074,38603785..38603828,38618088..38620549 |
Genome context |
|
Sequence |
000001 GGCAAACCCC CCTGTGCAAG TTACCTTATC TGTGCCTGTT GGCTATTCTT TGGTTTGAAA GAATTCTTCC AAGGATCCAC 000080
000081 CCTAACTGCC TGCCTGACTC GTTTCTTCCT TTCCCCTCTC AGTAAGCTAC ATTCAGCTTT TTAACTCCAC TAATTGCTTG 000160 000161 CTGATTGCTG TATTATTTTC AACAATTCCA TGAAGCCTGA GTAGCTCTAC AAACAAATCC TATCAAATTG TGGCTACTTT 000240 000241 GAAGGAACTG TTTCGGAGAT GTTTCCTATT ATCCTTGATA ATGTGCCATG AACATATGAA AAAACATAGA AACATGAAGA 000320 000321 AAACAAGAAG ACAAAAATCA CTAACATCTG GTTGGCTGTA TAGAAACAAA GCTGATTCTG GCTTGCAAAT GGATCTTACA 000400 000401 GACGTTGTCA CAGAGACAAG AAAAGCATAT AAAAAAATAA ATAAAGATGA GCTCCTTTCA AGGTGACTGA CTAGAAGCAG 000480 000481 CTGGTGTGTG CTGCTCTCAC AAAGAGAAGA AAGAGTGGTG AGTGGACCAT CCAGGTGGAC ACATTGGGAT TCATCAAGGA 000560 000561 AACAATACAC AGAAAACAGA AGAATGAGAC AGGACAATCA TTCACCCAGA AGTGGCATAG AGCCGGGAGA TGGCCCTCAC 000640 000641 CATGGTTAGT AAGTGAGAGT CCCCAGGGAG TCACATTTCT GCCACAGACC TTTGCAACCC TGGGCCCAGG CGATCCCCCA 000720 000721 TGACACCCGT GCCCCACCAG GGCCTCTGGA CTGACATAGA CAGCTACATG GAGTGTGGGC AGAACTGCCA CTCAGGCACT 000800 000801 CATGAAATCC TTGGAGCTTT TCATCCCCAG GCACCCTGGT ACCAATGGCT GCAGCTGCGG CAATGGGGGA GGACAGGCTC 000880 000881 TCTTGCATGT CCTCAGAATA GGAACACAAT CCATGGGGCT AAGCAGTGGG TGGACTGTGG GGCTCTTCTA CACAGCCCGT 000960 000961 TGCCAGACTG GCCTGGGATC CTAGCATGGT CACAAAAGTC CCACCTGGGC TCTTGAGGAA CAGATCTGTA CTTCCCTGGC 001040 001041 ATGGAACTCC TGGAGGGGAT GGGCAGGCTG CTGTTTTTGC TGCTCCACAG CCCTCACTCC TGTTGCCCTC AGTCTTGGGA 001120 001121 GTGAGCACAG TGATTGGGGA CTAACATAGA CCCCCAGCAC AGTGTACAGA CTTGCAGAAA AGCAGCCAGA CTCTTTTCCA 001200 001201 CATGGGTCCT CACCCCTGCT ACTCTTCACT GGGCAGCACC TCTTGACCTT GGCCCCCAGC ACAACCAACC CGCCCCCACA 001280 001281 TGAACGCTTT GTCAGTGATG GCTCTGTGTT TCTCTGAGGA GAAAAATCCA AAAGACAATC CATAAGCCTT CTGCTATTGC 001360 001361 AGCTGCAGTG GTATGGCCCT TACTACCTTC AGGCTGGGGA AAGAACGAAG GACTTGGTCC TTACACTGGC CCCTCCAGCA 001440 001441 CACCATCGCC ACCATATGGA GAAGAGCCCA GTCTCTCTTC CCCGTAAGCC CCCACTCACC ACTGTTCACC AGGCAAGGCC 001520 001521 CCTAGTTGGG GACAGCAGAG CAGCTGTCCT ACCCCCGGAT GAGAATTCCC ACTGCTATTG GCTCTATATT TTCCTGAGGT 001600 001601 GGGCCTCCCA GAAGCAATTG ACATCCCCTC TGTCACTGTC ATGGCAGCAG TTCTGCCCTT ACTGCACTCA GACTGGGGAA 001680 001681 AGAACAAACA GCCTGAGGTC TTCACTCACA CTCCTAGCAC AACACAGTCA TGATATGGAG AGGAGCCCAG TTGTTCCTCC 001760 001761 TGGTGAGCCC TTGACCTCCT ACTTTTCATC AAGTGAAGCC TCCAGCTTGG GCTAGCAGCG TAGCCACCCC ACCCACTGGC 001840 001841 TGAACATTCT CAGTAGCAAT GGCTTGCGTT TCTCTGAAGT AGGGCTCCCA GGGACAACGG AAAGCACCTC TCCCACTGCC 001920 001921 ACTGCAGCGG TACTGCCTTG CTGCCCTTGG ACTGGGGAAG GGGCAGAGAC CTTGAGTGCT TAACCCACAT GTCCAGGAAG 002000 002001 TGACAGCTGC CCTAAGGAGA GGAGGCCAGT CTGTCTCCTC TGTGAGACCC CTGCCACCCT TGCGCATCAC CAGGCAGGGC 002080 002081 CTCCAGGCAT GGGTTCACAA TGTAGCTGCC CCAATCCCAA GCCCATCTCT CCAATTAGTA GTGGCTCTGC ATTTCTCTAG 002160 002161 GGTGGAGCCC CAAGAGACAA GTGAAAGGCC CTCTGCCACA GCAACTGCCA AGGTCCCTTC CCCTGTTGCC TTCAAGCTGG 002240 002241 GGAGGGAAAA TAAAGCCTTA GCTCGCCCCT AGCAGCAGTG TGCAGCCCAG GAGTGCCAAG GCCAGACCTT AAGCCAGCAC 002320 002321 TGGAGTGGGA AAGGGAGCCC ACACTTTCAG AGCACTGAGA GGGAGCATGG CTGCAATCAT GAAGAAATAC AGAGGAGCCA 002400 002401 CGTGGTGGAG CAAGAGCCCA CCTACTGGCC ATTACACTTC AGTGCCATCT ACTGGATCAT AGCCCAAACT CCAACTCCAA 002480 002481 AAATGCTTGC TAATATACCC CCCTCTGTGA AAACAACGAC AAGATTTCAA CAACAAAGAC CCTGCACAAA ACCTCGGCCC 002560 002561 TCAAAAAACA TTCAAAAAAG GAGTCTGCAC TCAATTACAC CACAGTTAAA GGAGCATCAG CCCACACAGA TGAGAAAAAA 002640 002641 CTGGTGCAAG AGCTCTAACA ACTAAACTAC AGTGTTTTCT TTCCTCCAAA TAACTGTACT AGTTCCCAAG GAAGGGTTCT 002720 002721 TAACCAGGCA GAAAGGGTGG AAATGACAGA GAGAGAATTC AAAATATGGA TAGGAATAAA GGTCATCAAG ATTCAGGAGA 002800 002801 AAGTCAAAAC CCAATCCAAG GAATCTAACA ATTACAATAA AACAATACAG GAGTTGAAAG ACAAAATGGC CATTATAAGA 002880 002881 AAGAAC |
Predicted Small Protein
Name | NONHSAT033258_smProtein_719:1015 |
Length | 99 |
Molecular weight | 11040.3244 |
Aromaticity | 0.102040816327 |
Instability index | 56.5469387755 |
Isoelectric point | 6.62567138672 |
Runs | 14 |
Runs residual | 0.00381460995613 |
Runs probability | 0.0499974764681 |
Amino acid sequence | MTPVPHQGLWTDIDSYMECGQNCHSGTHEILGAFHPQAPWYQWLQLRQWGRTGSLACPQN RNTIHGAKQWVDCGALLHSPLPDWPGILAWSQKSHLGS |
Secondary structure | LLLLLLLLLLLLHHHHHHLLLLLLLLHHHHHHLLLLLLHHHHHHHHHHHLLLLLLLLLLL LLLLLLLEEEEELLHHHLLLLLLLLLLEEEHHHHHLLL |
PRMN | - |
PiMo | - |