NONHSAT033344
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033344 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1384 nt |
Genomic location |
chr13+:41241816..41243199 |
Exon number |
1 |
Exons |
41241816..41243199 |
Genome context |
|
Sequence |
000001 TTTTTATTTG CAACGGAAGT GATCGGGTGT TAAGTAAAAA CGCAAGGGGG GCGGGAGATA GGACCAAAGC CTTGGGGCGC 000080
000081 AGCCTGCCCC ACCCCCAAAT TCCTTGAGGC TACTTGCTGT GTGTGTCAGT CAACCCCCCA CCCACACCCC ACCTTTCCTC 000160 000161 ATCTGGGCTG CAGGTCCAGG ACATCCTGTC AAGGATCAGT GGGGCCAAAG GTGGGAAGAT AATGGCCCTT GTGTCTCAAG 000240 000241 CAGAAGAAAC AGTTTTCCAG TTTTGTTTTG TTATGCTTTT GCTTTTTTAG GAAGAATATG GAAGGCATTT CCTTTTAGAA 000320 000321 AGATGGGACC ACTTAGGATG GAAGATGGAC AGTAGGGTTT TAAATATCTT GTCCAAAAGG ACAGCTTCCA ACTCTTGTTT 000400 000401 TTTAATCCCT TTCTTTCTTA CAAGTAATTC TGCAATGGAA AAAGTGGCAT CTAGAGAAAA TTAGTCAGTT GGACAAGAGG 000480 000481 TTGTTGAAAA AATAAAAGAG AAAAGAGGGG AAAAAAGGAA AAATTAGGCC TCTTACAAAA GTTAAAAAGA TTGAGAGAGA 000560 000561 TTATCTTTCT TCTTTTATAT TCTCACTATC GTCTCTCTAG TCCGGGCTCC TGTTTCTTCA TAATCTATTT ATCACAACAG 000640 000641 CTTCTTGCTG ATACTAGGCA TGGGTGGGGT GGGGAGCGTG AGCCGGATGG ATTGGGGACG GGCGGGGACT GGTTCCCACC 000720 000721 CTGGTCTTGT GGTCTCTTCA CGTTTACTAT CAAATTTGGA CAGTCTGGGC CTCCTCTGAC AGCCGCTAGG GGACCTCAGT 000800 000801 AACTCAGATG ATGAGCTCAA AGGCAGGCCC CCAAAGTACA GCTGTTGCTT CCCCCCACCT TTCCAATTAC ACTCTGCAGA 000880 000881 AGCAGCCCCC GATCCAGACA GCCGCACCCT AAAAATAGGC GGTGCCCTAC TGGATCATTC TTGGCAAAGG AAGCCAGCTT 000960 000961 CAAATTTGGC CTTGCCTTCA TTTCTATTCC GGTTTTTCAG GGCGTCAGAG AATATTTATT TGGTTAAAGG AGTCTTCCTA 001040 001041 CAGACTTTCC CCAAATCCTT GAAATCTTTG AGGCTCTCCT GCCCAATTGT TTCTTCAAAT GTCATAGTTT ACTTTTATTT 001120 001121 GGTCTTTCTT TAAAAAAATT GACGAGGCAG GCACAGAGAA CCTATAACAC CAATGTCCCT GACACATAGG TCCaaaaaat 001200 001201 taaaaatata tattGAAGGG tttttacagc taaccaccac actgttgtat ctaaatatca atttactgaa ccccaggatg 001280 001281 ttggtgaata tttcacttgt ttccagtctt tagctatcat agactattct gtaagaaata accttgcagg gaggccgagg 001360 001361 cgggcggatc atgaggtcag gaga |
Predicted Small Protein
Name | NONHSAT033344_smProtein_1172:1312 |
Length | 47 |
Molecular weight | 5304.3609 |
Aromaticity | 0.0652173913043 |
Instability index | 61.0152173913 |
Isoelectric point | 10.1659545898 |
Runs | 5 |
Runs residual | 0.05266563147 |
Runs probability | 0.070906200318 |
Amino acid sequence | MSLTHRSKKLKIYIEGFLQLTTTLLYLNINLLNPRMLVNISLVSSL |
Secondary structure | LLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLEEEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo |