NONHSAT033355
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033355 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3109 nt |
Genomic location |
chr13-:41428797..41458285 |
Exon number |
5 |
Exons |
41428797..41429129,41429891..41429953,41445381..41446357,41456140..41457108,41457519..41458285 |
Genome context |
|
Sequence |
000001 TGTTCTTTTA GACTCTAGGT GAGCTTGTAG TAATCCAAGG ACTGGTGATT TAGGCCACTG AGTTCTGGCT TTGAGTACAT 000080
000081 CTCTAATTCC TAAACCTTCA CTAAGAGGGA GGTGAAGGGA GTCAGGTGTG CCACATGTCT GCTACTGAAA AATGCCTAGA 000160 000161 TGGGAAAGGA GTTTGAAATA TTGTCCTAAA ATGAAGTTTC TGAGTTAGAT GGACCGAATT TCACCATGTG TTCACTGTTA 000240 000241 TTACTGTGTA AAATCAAGAG ATTTAAATGA GATTACGATT ATTAATTAGC TTTCTGAGAT ATTGAAACCT AAGAACCTGG 000320 000321 CCGGGTGCGG TGGCTCACGC CTGTAATCTC AGCACTTTGG GAGGCTGAGG TGAGCGGATC ACCTGAGGTC AGGAGTTCGA 000400 000401 GACCAGCCTG GCTAACATGG TGAAACTCTG TCTCTACCAA AAATATAAAA ATTAGCCAGG CGTCGTGGCG CAGGCCTGTA 000480 000481 ATCCTGGCTA CTTGGGAGGC TGAGGCAGGA GAATCGCTTG AACCCGGGAG GTGGAGGTTG CAGTGACCCA AGATCATGCC 000560 000561 ACTGCACTCC AGCCTGGGTG ACAGAGTGAG ACTATGTCTC AAAAAGAAAA AAGGAAAACA AAAAAGAAAA CTAAGAACCC 000640 000641 AATTACCTCT GCCACATACA TGGGCTGTCT TTGGTTAATG TGATGACATA CTAAGCCCCA AACTGGTATA TATAATCTCT 000720 000721 GGTCACTTCT ACACCAAAGC TGTTAACTTA ACTTGGCAAT GAAGGCCGTA TGGAAAATCG AGGACCAGGG AGAGTACCTT 000800 000801 GCCAGCAATT TTGTAGTTAT GATTTTCGAT GAAGAGCTGC ACAGTAATAG GGGAAATTCT GAATGGTATT CAAGTCCTCC 000880 000881 AGCCAGCAGC AGCAGGATGT GGTTTTCAAT GTGCACTATG CAAGTAGCGC TTCAGATGGA GCTTATTCTT ATTTTTAATT 000960 000961 TATTTTTTAT TTTATTAATT CATTTGTTTT TATATATTTT AAGATTTATT GACATAAAAA TTATATATGG TGTACAATTT 001040 001041 GATGGTTGAT ATGCACATGC GTTGTGAAAT GATCATCAAA ATCAAGATAA TTAACACATT ATCACCTCTC CGTAGTTACT 001120 001121 ATTTTGTGGA TGCATGTGTT TTTATTTTAT TTCTGAAATA ATTTTAGACT TACAGAAAAT TTGAAGAAAT AGTACAGAGT 001200 001201 TCACATATTT CTACCACTTT GCTTCCCTGA TGTTAAAAAC TTATATAACT GTAGTTCAGT AATCAAAATG AGGAAATTAA 001280 001281 CTTTGATACA ATACTATGAA TTAAACTATA GCCCTTTGAT TTTCACCATC TCCTCCCACC CCTACCATGC CTTTTTAATA 001360 001361 TTCCAGGATA TAATCTAAGA TGCCACGTTG CATTCATTCG TGTCCCCTCA GTTTCCTCCA ATCTGTGACA GTTGTTCCGT 001440 001441 ATTTCCTTGT CTTTCATGGA CTCTTGATGA GTACTGGCCA GCTTTTTTGT AGAATGATCC TCAGTTTGGT TTTGTCCACG 001520 001521 TTTTCCTCAT GATTAGACTA AGGTGATGTG TTTGGGGGAA GAAGATCACA AGGTGAAATG CCCTTGTTAT TTCCTATCGG 001600 001601 GGTACAGGAT GCCAACGTGG CTTATTAGTG ATATTTACCA CGATCACTTG GTTAAGGTGG AATCTCCCAG GTTTCATTAC 001680 001681 TGTAAGTTAC TTTTCTCCCT TTGTAAATGA TAAACATCTT GGAGAGATGC TTTAGATAGG GTCTGGGTCT CATTTTTTGT 001760 001761 AGAGCTGGTC TTGAACTCCT GGTCCCTTTT TTTTTAGAGC TGGTCTTGAA CTCCTCCTGC CTCAGCCTCC CAAAATGCCA 001840 001841 GGATTAGCTG TGTGAGCCAT GCTTATACCA CTGGGCGTGA TGGTGTTGTT TTTATTGATC ACAATGTGCT TCAAGGTAAA 001920 001921 TACTACTTCA GCATGATACC CATTTTTTAA AGCTTAAAAA TAAATATGGC AAAATAATAT ATTTTTAGAT ATATCTATAT 002000 002001 TTATACCTAC ACCTGCCCTC TCTATACATA GATATATATG TAGACTATAA AGAAAAGCAC AGGGATTATG GACATAACCT 002080 002081 TCAGAAGAGT GGTCATCTCT GTGATGAAGC AAGGGGACTG GATCAGAGAA GAAATTCCAG CAGTCCTGTA GCTTCCACAG 002160 002161 GACTAGAAAT ATTTCATTCT GCATGAAGTG ATGGGTGTAT GGATGTTATT TAATTGTTAT GCTTCATAAC TTAGATTCAC 002240 002241 ATCCCACTTT GAGAATATCT CCTATAGAAA CAAAGGACTT GTATTTAAGA ATGTGTAAGA AGAGTCACCA CGGAGCTGAC 002320 002321 ATGGAGGCTG GTGGCACCTG GGCGCAACGC CGTATGCCAA CTAGCCTACC GCGTGGATCA CGGAGCTCAC TGACGAGAAT 002400 002401 GTCAAGTTCA TCATATATAT ATATGTAGAT GTGACTTAAT ATTTCAATGA GAAACACTGA AATAAAAAAA AACCAAAAAG 002480 002481 CATTTCCACC ATCCATCAGT TGCTAAGTAG CCATGTGCCC CACCTAATGT AATCTAATTT ATCATGTAAT TTTGGTTTAA 002560 002561 GCTGGACATT AAGACTTGCA AAGAAATGGC TTTTGCCTAA GATTAATAGT AACTACTAAT ATTCTTTTTC TTCAATCTGC 002640 002641 AAAGGTAATG TTAATGAAAC TTGCATGTTA AAATTCTGTA ATTATAAGTA AAGTGTTTTA CTAAGTACCT TAAAGGAAGT 002720 002721 CGTGCAGTTT CTAGACAAGA AGCATCCAAA CCACTATCAA GTCTACAATC TATGCACTTC ATTATTTACT GTGTTATTAC 002800 002801 CTGTAGAGAT ATAACATACA TATTATTTAT TTTAGGTGAA AGAGCTTATG ATCCTAAGCA CTTCCATATT AGGGTCAGTA 002880 002881 GAATCATGAT TGATGATCAT TATGTCCCCA CTCTACAGTA AGTTTTATGC TAAGTTGACT ATCAGAAGAG GGCTAAATAT 002960 002961 ATTGGGCTTG GTTTTCTGAA AATATTTTAA TTTAACTAAA AATATTAAAC TTGAAATCAG TAAGATGGTG GTATTCTCCA 003040 003041 AGGAAGTAAA TGAGTGGATG ACTCAAGATC CTGAAAACAT CATAGTGATT CACTGTAAAG GAGGCAAAG |
Predicted Small Protein
Name | NONHSAT033355_smProtein_758:1048 |
Length | 97 |
Molecular weight | 11352.2033 |
Aromaticity | 0.166666666667 |
Instability index | 45.5895833333 |
Isoelectric point | 4.88726806641 |
Runs | 15 |
Runs residual | 0.022014604811 |
Runs probability | 0.0386916328093 |
Amino acid sequence | MKAVWKIEDQGEYLASNFVVMIFDEELHSNRGNSEWYSSPPASSSRMWFSMCTMQVALQM ELILIFNLFFILLIHLFLYILRFIDIKIIYGVQFDG |
Secondary structure | LLEEEEELLLHHHHHLLEEEEEELLHHHLLLLLLEEELLLLLLLHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHLLLEEEEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHH HHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooTT TTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii |