NONHSAT033428
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033428 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4088 nt |
Genomic location |
chr13+:42812943..42817030 |
Exon number |
1 |
Exons |
42812943..42817030 |
Genome context |
|
Sequence |
000001 CATGAGAGTC AGTGAACGAT GACTTGATTT TTACATGACA TTTGAATTCT GTCACTATCT GATTCTTGAC CTAAAGGTTT 000080
000081 CTTTGCTAAA TCTGATATTT ATTATAGTAT AATATGATAA TTTGGAGCTC CTGTTGCATC TCACTGCCCC AAAAATGTTG 000160 000161 GAATGCCATA TGATACAGGG AAAAGATTGG AGTTCATCAC CGTGGAATTT TGATCTGTCT TAATGACACA ACTTAATTTT 000240 000241 CATGATGATA GATCTCTGAA TGATTAATCC AGAATGATTT GGTACAGTGA CTGGAAGAAA TTGTTTTTCT GGGAATTTGC 000320 000321 TTCCCATAAT GACCTGATAT ACAGGTGACC TTAGTATAAT TGAAATTAAT TATAATTTTA ATTAGAACAT GCTCTGTTTA 000400 000401 CAGATTATAA TTGCGCAGCA TTTTAAAAAA ATATACATAA TTATGAGGAT GAGAGAATTG CAAACTTGAA CAGTTCTTTT 000480 000481 GTTTTCTCTC CTTTTACTTG AAAAGCTTTC AGAAAGCTTT TGAAAGATGA CACAGTTTTC ATAGCAACAG TATGCAAATT 000560 000561 AGGTTTTTCT GCCAAGAAAC TCATAAACTA AAGTATGGAA TAACACAAAT GCTTAATCTT AATCTTGGCT TTGGATTTTG 000640 000641 TAAGCAAAAG CATTTTCTGC ATCAATTTTT TTCAGTATGC AGTTGCATAT TTCATTTTTT GATTATGTCA AAAGTTGAAT 000720 000721 TCTCATTTTA TGCTGTGTTT CTCATTAGTT GCAGTAAAGT GTTGATTTCA TTGCTGCCTT TCAGGCCTTC ATCATACAAA 000800 000801 CCCTCACCAT TTTTCACTCC TGTGCTTTTG CCATAGGTTT TTTTTTGTTT TTGGTTTTTT TCCAGCAACT AGTTTTTCTA 000880 000881 CTTTCACTCT TTCCCACCAG AGTGGTCTCT CTAAAACAAA TTTGCTAAAG TTCTTAAGTA GGCTCTTTTT TCTCTAAATT 000960 000961 ACAGAATAGC AAACTAACTC CTAAGCAAGA TGAGTCAGTG TCTATGACCT TGCCTCTTTC TTCCTTTTTA GTATCCTCAC 001040 001041 CAACCTTCCC TCTGTTGACT TTTGTAATCC AGGAATTTGG AACTACTTAT GACTTAGTGC CTTGGCATAA TCACATGCCA 001120 001121 TAGATGAACA TGTTCAAGAC TCAGTTCAAA TTTAACTTTC TGTGAAGCCC TACCTGACTT CCCTAGGCAG GTATTTTCTC 001200 001201 CATGCCTATA GTATATTGAA ACTTTTTCTG TTAAAATAAC ATAACATTTC AATTACACAC ACACAACCTG TCTCTTCCAC 001280 001281 TGAACTTCTC TCTCCCCCTT TGTATTCTCA GTGTCTAGCT ACACATAATA GGACTTTGAT AAATATTTTT GAATGAAGGT 001360 001361 AATAGAAAAC CCGAACTTCT CTATATTTGT GTACTTTCAC AAACAAAGGC TTAGAATTCC ACATGAAAGT CCACATGAGG 001440 001441 TAAGTGTGCA TTCATGAGCA TGTGTGCACT CTGGGCAAAC CAACAGAAGA TAAACAGCAA GGAAGAGCAG TTGTTTTGTG 001520 001521 AAAAATAATC ATCTGTTAGC TGTAAATCAG AAATATTGGC CAAATCAGAA TTCTTGTTTC TAAAATGAGG CTTCTAAAAT 001600 001601 TTTCACATAA CTGCCAAACT CTTATTTGTA ATTCTTAAAT ATGCCCTAAA GATCATCTTT CTCTTTTATA GACATTTAGT 001680 001681 GTATACAGTC CACATAAATA CATATACTGA TTACCTACAG ACAATAATGA GACTTCAGAA AGAATCAAAA GCAATAGTGA 001760 001761 TGGTGGAATT TTTAAATAAT ATTCAGCTGG GGGGAAATAG ACTGAGTTTG TGTGATTTCA GGTTATTTAG AGTTATTAAT 001840 001841 GTAAACATAA GAAGGCTTGT GACTCTTATC ACCCTCTATA GAATATAAAG ACTAAAAATA AAAACTATTA CCTCTGGGCC 001920 001921 TGTTTTTCTT TGGGATTAGA TAAAGCCTTT CTACCATATC ACCAAATACT CATAAAGGCT AACACAGAAA GCTTTTCCAA 002000 002001 GTTAATAATT TCTAAAATTA AATATCAGGG CCAGGTGTGG TGGCTGACAC CTGTAATCCC AGCACTTTGG GAGGCCGAAG 002080 002081 TGGGTGGATT ACCTGAGGTC AGGAGCTCGA GACAAGTCAA CATGGTGAAA CCTCATCTCT GCTAAAAATA CAAAAACTAG 002160 002161 CCAGGCATGG TGATGCACAC CTGTAATCCC AGCTACTCGG GAGGCTGAGG CAGGAGAATT GCTTGAACCC AGGAGGCGGA 002240 002241 GGTTGCAGTG AGCTGAGATT GCACCACTGC ACTCCAGCCT GGGCGACAGA GTGAGACTCT GTCTCAAAAA AAAGAAAAAA 002320 002321 AATCAAAATA ATTGTAATTA ACTGAAATGC CCTGTTCCTT CATTCACTTG ATAGACTTTT CTACCTGCTC TATACTTGGC 002400 002401 ACTCAATTAG ATTCTGGGGA TACAGATAAA ATAAGACAAA GCTCCCATCT GGTAGAGTCC AAGTTTGTTT TCACAGTTAT 002480 002481 TTTTCCACAG TCTGTTTAAG GTATTAGGAG GACTTTTATA AACCGAGTGT TTTTCAGGTT ACTTCAGAGA GGAGTCTCCT 002560 002561 TCCACCCAAA AAAACTAACC AAATTATTTT ATCATAAAGA GGTAATCCCA TTTTTATGTC CACAATTTTT ACATTTTTGT 002640 002641 ATCAGCCACC AATAATTTTG ACTGTTTTGT CAAGTACATA TTTCATCAAT CCTATTTCCA CAGCCGTACA TGTGATCCCA 002720 002721 GTGACTGATA GATCTGTAGA ATGTGAACTC ACATTTAAAG TTTATTTTGG GAAGGCATAT ATGCCTTTTG ATGACACACA 002800 002801 CACCAAAATA TATAAGAGCT GTGCATGGTA AACCCACAGT AGAAGGGAAA AAGTAATGCT TTCTGGTATA CTTCAGAGGC 002880 002881 TCCATTTGAA GATGTGCGTT GATGTTTCCT TGATTATTTT GAATGAGGAG TAGGCGGTAA TATTTAACAG GTAGCATACG 002960 002961 TATCTAAGCA TATAGTAAAT ATTACTAGTA CTTGTGTGCC ATGAGGCACT AATACATAGG TGAAACAAAA ATATTTTTAG 003040 003041 TTCTAAAAAA TTCTCTAGAT ATTTATGGAT GGTTAGGCAA TAGGGTTCCT TCATGAGAAG GAAAAAACTG TATCTTTATT 003120 003121 GTCAGTAAGT GTGGAAAAAA ACCCGACTTG TATGTGTATT CACAGTTTGA TAGGCATATT TTGAAGTCAT TGTTTTCCAT 003200 003201 CAGTATTAAG TATCATCCAT TTCTATGTTC TCTAGCAAAA GAAAATTCTT AGTGTGATAC AGCTTTACTC TTTGTTTGAC 003280 003281 TTTGTACAAG GTCCACAAAA GGAGGAGGCT CAAAAGATTG GACACTTTAC CCTGACATTC AGCACATTCA TTTTATCTTT 003360 003361 CGATAAAGAT AACCAGAAAT CATTTGCCTC TTGTTTATTA TCATGTTGAA AACACAACAG TATAGTTCCT TTTGTCCCTT 003440 003441 ACATTGGAAA AGGTATTTTA AATTTAGCCT TGCCGTATTA TTTATAGTTA GGAATTTACT ACATTTTGGT AGTCTGTTTT 003520 003521 GAAACTAAGC ACTTGTGTCT GAAAGATGCA GATAATATCT ATCTATTTAT TACACAGTGG GCTCTGTTTG CTGCAGAAAA 003600 003601 GAGTGAAACT TTTAACTGCT TAGCACACTT GCCAGTGAAA TATACCTGAC AGAGCAGAGG TTATAACTTT GGCTCTAATT 003680 003681 ACTTTTAGTA ATGGTAAGAC AACGTGAGTT TTGTTTGTTT ACATGCTGTT TACAATGGCA TAATTTTAAA AATATATACA 003760 003761 ATTGAGATAT TTATTGCCTA CTATTTTAAA GATGTTTTAT GTGTTTTCAC CTTTGGAATA TATTGTTACA TTTCCTTGTA 003840 003841 CAGATAATTT TGGTGGCTTT GTTAATGTAG CTAGTAATTT TTATGACTAC TAAGTGACCA GTTTTCGGTG CCTTTTATTG 003920 003921 TGGGATGCAT GATTATGTAT TTATTGTACG GAAGTCACTG ACGTGTGTAT TTTTGTACTT TGCTGAAAGT AATGGTTGAT 004000 004001 CCTGATGTAC ATGATGATGA AAGACATCTT TCCCAAAGGG CACTGCCTTG AGATCATCCT TCTCAAATAA AAAGAATGCA 004080 004081 TTTGAAGA |
Predicted Small Protein
Name | NONHSAT033428_smProtein_551:835 |
Length | 95 |
Molecular weight | 11041.1578 |
Aromaticity | 0.191489361702 |
Instability index | 46.0532978723 |
Isoelectric point | 9.46771240234 |
Runs | 16 |
Runs residual | 0.0413968547641 |
Runs probability | 0.0530272919979 |
Amino acid sequence | MQIRFFCQETHKLKYGITQMLNLNLGFGFCKQKHFLHQFFSVCSCIFHFLIMSKVEFSFY AVFLISCSKVLISLLPFRPSSYKPSPFFTPVLLP |
Secondary structure | LEEEEEHHHHHLHHHHHHHHHHHHLLLLHHHHHHHHHHLHHHHHHHEEEEEEELLEEEEE EEEEEELLHHHHEELLLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH HHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTT TTTTTTTTTooooooooooooooooooooooooo |