NONHSAT033622
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033622 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3508 nt |
Genomic location |
chr13+:46626983..46675482 |
Exon number |
4 |
Exons |
46626983..46627100,46668988..46669137,46671245..46671534,46672533..46675482 |
Genome context |
|
Sequence |
000001 ATGCGAGCGG TAAGAGTGCG GCGGGACTTG GAAATCGAAT CTGTGCTCTG TGAGAGATCC TAGGAAAGGA AACTGGGAGC 000080
000081 CCGGGAGAAC TAAAATTCCC AATTAAAAGT GAATTTAAAT CTGAGCTGTT CTTAGACCCA GAATTTCTTG CCTGAAGGAG 000160 000161 GAATCAGGTC CCCACAAGGA AAGACCCTGC AACTGTATAA AAAAAGAATC TAAAAAGATC ATGACTCCTT CAGTCCTTTC 000240 000241 CCAAAGAGAC CTATGGAAAT TTCCTCAGGA GCACCCACAA CAGAATAGAC ATTAAACAGC TGCATAAACA AATGACTCAG 000320 000321 CCAGTTGATG TCAGTCAGCC TGTGTCAACA GCCACCCCAA TGCTGGCACA AAAGGCACTA GAACAGAATA GCCTGATGGC 000400 000401 AGAGATGAAG TGTGCATGGC TCCAGCAGCA CGGACTCCTC TCATTAAGGC TGATCTAGCT ACTGTTGCTG CCCCATGTCT 000480 000481 AACTTGCCAG CAACGGAGAC CAAAGTTGAG CCCCGGAATC AGCACCATTC CTCATAGAGA CCAGCTAGTC ACTGGGTGGA 000560 000561 AGAGGGACCA AGCAAAACCC CAGAAGAGTT GATCTCAAAG CTTATTTTAT GAAGAAAATT GACCTGAGTG ACACAAAGGG 000640 000641 TTGGACTGTA GTAGATGTCA CGTTTTGCTG CCTAGATCTC CATCCAGGGA TGAACTCTTA TTTCCTCAGC TTCTTTGTCT 000720 000721 CCTCAGCTTC TGGGAGGGTT GGCAGCTGAT ATTCTCACCT GAGTCCCTTT CTAGGACTTG CCCTTGCCTG AAGAGAGCTG 000800 000801 TGCTGCCCAA CATGATGCCT CCTCCAAGGT ACAATCCACA CCCAGTGACT AATAAACAGG GGTTACAAAG GCATGCCTGC 000880 000881 TTGCCCCAGT TTGGGACAAC TTTACCAGGC CAACCCAGCC TCAAGGCTCT CCACAGGAAC AGGTGAGGCC ATAGTTGTGA 000960 000961 TTACATCACA GGTCAGTTTC TCCTCTGCCC AAGCCTTCTT CCTTCATTCC TCCACAGATG CTGATCCTGA GATTCCTTTC 001040 001041 CAGTAAACTT CCTCCATGCA ATCTTCATCT CAGGAGTCTG TTTCCTGGGG AAACTAACCT GCAACTGATA CAAATGCCTA 001120 001121 TTCTGTGAGA TAAAACACTA AAAGTACAAT GCGAGTGGTA TAAATATTCT GCTACAGGAA TACAAAGTCA GGTATCATTT 001200 001201 TTGACTTAGG TAGTCAGAGA ATGGAGATAT TCTGAGTTGG ACTTCTGAGA TACTAGGATT CAATAGGTGA AGGGAAGATG 001280 001281 AGATGGTATA AGACTAACAT AGGCAGAATT TTGCTAAACG AATTGGAGAT GAAACATCAT AAGTGCAGGT GCACAAGTAG 001360 001361 AAAAGTAAAA TCAGAGCTCA AGGAAGGAGA AGTGATCCAG CTGGGCAGAA ATATGGGGCC TATATAGAGA TATACCAGGA 001440 001441 AATAAAGCCA GGACGAATGG CAGGGTAGGA CCTGATTGTT AAGGGTCTTA AATGCTGGGG TCAAGATTGT GGCCCTTACT 001520 001521 TAAAAGTTGG TTGGGCATGA TTTTGGGAGT TGTAGCAAAA GATGTGGCAA ACTCAAAGCT TCCTTTTCAT GTAAAGTATA 001600 001601 GAGAAGTGGA GGTTCATATC ATTAAATCAC TGTAATTTCA GTGTGAACTT CTAACAATTT GAGCTAACCA TGAGATAGGA 001680 001681 CACCTTATCA AGCAATGAGC TCTTCATTAT CTAAAGAGAT GCTGAATTTC AAGTCCATGT AGAGGAAGTC TTGTGTTGAC 001760 001761 TAGAGCATAA TATGTCTGGG GGGACTTTTC TTCTTTTTTA CTGATATTTA GTAACTTGGA TATTGTGCTA AGTGCTTTAC 001840 001841 AGGTATTCTT ATTTAATCCT CACAAGGCAG TATGGTAGAT AATCTATTAT ATTGAAAATA ATGGGCCAGG CACAGTGGCT 001920 001921 CACGCCTGTA ATCCCAGCAC TTTGGGAGGC TGAGGTGGGT GGATCACCTG AGGTCAGGAG TTCAAGACCA GCCTGACCAA 002000 002001 CATGGTGAAA CCCTGTCTTT ACTAAAAATA CAAAAATAAG CGTGGCATAG TAGCTCACAC CTGTAGTCCC AGCTACTCAG 002080 002081 AAGGCTGAAG CACGAGAATC ACTTGAACCC ACGAGGTGGA GGTTACAGTG AGCCAAAATC ACACCACTGG ACTCCAGCCT 002160 002161 GGGTAAGAGA GCATGACTAG GTCTCAAAAG AAAGAAAGAA AATAATGAAC AAAAAATGTT GAGTGGGCAG TATTAAATTA 002240 002241 AAAAAAAACC TAATGTATTA AAGAAGGAGA AAAGTATAAA AATTAGTCAA CAAGCAGAGA AAGAAAGAAA ATATAAAGGT 002320 002321 AAAAATGTAT GTTATCCAAA TGAGACCTCT TAAGAAGAAA AAATAAAGGA AATTCAAAAA ATAAGTTAGG AAATAGTGAG 002400 002401 TAAAATTATG AAGTTAAAAA TTCACCAAAA ATTTATTGAT ATGTCCAAGT TCAGCTTGTA GTGAACAGAC TCTTCTTATG 002480 002481 CAGAATTTGA GCAAAGTGCT AACACAACAG AGTTAGGTAA TGGGATGAGG GTCAGTCAGA TCACTCTATT TTTGGAAACT 002560 002561 GGTTTCATGA CTGCTTCCCC TTACTTAGTC ATAAACAGGC TATATAAAAA GCTGTCAGAG TGGAAAGAGG GAGAGGATTT 002640 002641 GTGAATTTTT TTTTTTAGCA TGTTTTTATG GTTCTGTAAG TCACCACCCT CCCAAAGGGA TGAAGTTTCG GGGTGCACTC 002720 002721 CCCTTACCTC AGCCTAGTAG GGGGACTTCC AGGAGATAAT GAGAGAGTTG GATGTTTCCT CAAATTTACA GACACAAAGA 002800 002801 CTGGTGCCTG GCTTCTCCTG ATAAAGCTAA ACCTGCATGT GGCTGGTCTC TAGTTGGCTA GATAGTAGTA GTTAAAATGA 002880 002881 AAAGAAACAC TTAATGTTAG ATGCCATCCA ATAGGGCCAC CTAAAGGGAT GGAAGGTTCT CAACAACAAG AGCCCAGAGG 002960 002961 TAGAAGCAAG ACTCTTAGCG GGGAAGGATG GAGTCGCAAG TGAAAACCTA GACAAAGAAG CATCTGTCCT GGTCCAGAGG 003040 003041 CTTCCCCAAT AAAGATGTCT CACACAACTC TAAGAAGTTA GAACTCGAGA AAAAGACTAA CAAGAAAAAG AGTAAGGTGT 003120 003121 GTTTGTGGAA GAGGTGAGGC AGTTGTTTTC CTATAAATAA TGTTAAATTA AACTAAATTT GGTCTGAGGA TGCCTCGTAA 003200 003201 CTTGAGTCGC TACATAACAA ACTGCAACCT AACTTAGGAG TATTTTTTTT TTGTACTAAC GAGGTGAGTC TCAGCCAATC 003280 003281 ACAGCAGCCA AGCTACAGCC AATCCCATGT GGCCAACTGA TCAGCCTATG CCCAGTAAGA CAACTGCTCA CCTGTAACTA 003360 003361 CTCAAGCTGC TTCTGGACCT CATTTCCATT TGCTGTTTAT AAGTGCTGCC TGCCCACTTT GCTGAGCAGA ACTCTCTGAA 003440 003441 CTTCTTTCGT TTTTGAGGGT TACTTGATTA GAAAATTGTT CTTTGTTCAA TTAAATTTTG CTAAATAT |
Predicted Small Protein
Name | NONHSAT033622_smProtein_872:1045 |
Length | 58 |
Molecular weight | 5972.5817 |
Aromaticity | 0.0877192982456 |
Instability index | 50.9771929825 |
Isoelectric point | 4.30767822266 |
Runs | 7 |
Runs residual | 0.0311403508772 |
Runs probability | 0.0458021046257 |
Amino acid sequence | MPACPSLGQLYQANPASRLSTGTGEAIVVITSQVSFSSAQAFFLHSSTDADPEIPFQ |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELLLLLHHHHEEHHHLLLLLLLLLLL |
PRMN | - |
PiMo | - |