NONHSAT033702
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033702 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1406 nt |
Genomic location |
chr13-:48863195..48871266 |
Exon number |
3 |
Exons |
48863195..48863733,48868549..48869084,48870934..48871266 |
Genome context |
|
Sequence |
000001 TGCAGGCTCA ACTCTGCCTG GCAGTGGCAA GGGCCAGGGC CAGTGACTGA AGCAACAAAC TGCCAGATGA CTGCAGCTCA 000080
000081 AGCCAATGCA CAAAGCCACT GCAACAAGAG AGGAAATTCT TCCATTTCCA AGTGTGTCGA TTTCTCCCCA TCAAGGAAAA 000160 000161 CAGCTAAGGC AATGTGTTGA TATTTTCTTT GACCAAGTCA TCAGGAGTCA CATAGACATA CAGCACTCAA GAAGTGGCTG 000240 000241 TAACTAAAGG CACATCTCGT TCATCTACAA CCCTTGTAAT CCCAACCTTT CTGATGCACA AACCCTTCCC TAGTTCTCCC 000320 000321 CACCACCACC AGTCACCTAT AAGCCAAACA GCCTGGCCTA ACTCCAGGGT CATTGACCAC TTGTTTTCCC CAACTGCCAC 000400 000401 CATAGCAACC AACTGTATGG GCCCTGCCCA GAGACTACTG AAGCAACAGA CTTTACATTG GCACATCCCA GTGGTTCCCC 000480 000481 TCCCTTTCCC CAAGCCACAC ACATCTCACC TCCCACCCCA AGAGGGCTGA GATAGTGCCT AACTGTTGGG CTTCTAACAA 000560 000561 AGTGTAGCCG TAAGTGCAGT GGAGTTAATG TCCTTGGGGT AAATCTAATC AAAACAAGAT GGGTCCAGCA TATAAACTCC 000640 000641 TCTCCTTCCT CCACCCAGAC AGATTGTCCT GAAACACAGT AGTCCATACT ACCTCTCAAA ATATGACCCT CATGATACTG 000720 000721 ACCAATCACC CGGGCTTGAT ACCAAGAGGT AGCTAGTTCG GTAATACACT ATTTTATTAT TAATAGTTTC TCTTCCTTCT 000800 000801 TTGCCCAGCC CGTTCGTCTT CACTCCAGTT TCTCTCAAAC TACACTCAGG CTCTGTTTTC TACAGAAAAA ACTCAACACC 000880 000881 CCAGGAACAG AATCAGTGCT TTTTCCTCCA AATAGTTATT TTGAATGTAA TCAGCATCAA CCAGCCTCTC TTCTGCCAGC 000960 000961 TCTTATTATT TCTATTTTAT CCCCTGCCAA TCTGGATGTG GGACAAGTGC AAGTTCCTCC AAAGAAACTA CTGGTGTAAA 001040 001041 AGTATAAATG GGAAACGTAG TTGTTTTTGA TGATTTTGTA AGAAAAATGG AGAAGACATT TATGTTGAAC ATGGAAAACA 001120 001121 TGTTTTAAAT CTCTTTATAT TGGAGATTAG TAATGATATT ATTTGGATGA TAGGAGAAAT TTGAATATGG ACTGAATATT 001200 001201 AGATATTGTA TTGTATCAAG TTTAAGTTTC TGGGTGAAAT AACTATGTTG TGGTCATGTA GAGAACAGCC TTGTTCTTAG 001280 001281 GAGACACATG CTGAAGTATT TGGTGGTGAA GTGTCGTGAT GCTTACAACC AATTCTCAAA CAGTTCAGAA AATTATACAC 001360 001361 AGGTGCACAT TTGTCTCTTT ATCTATTTAT CTGCCTATCT ATACAC |
Predicted Small Protein
Name | NONHSAT033702_smProtein_293:529 |
Length | 79 |
Molecular weight | 8772.9757 |
Aromaticity | 0.0641025641026 |
Instability index | 93.6179487179 |
Isoelectric point | 9.78277587891 |
Runs | 7 |
Runs residual | 0.0439337085679 |
Runs probability | 0.0131223660635 |
Amino acid sequence | MHKPFPSSPHHHQSPISQTAWPNSRVIDHLFSPTATIATNCMGPAQRLLKQQTLHWHIPV VPLPFPKPHTSHLPPQEG |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLHHHHHHHHLLLEEELLL LLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |