NONHSAT033779

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT033779

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

8046 nt

Genomic location

chr13+:50557620..50566151

Exon number

5

Exons

50557620..50559100,50559283..50560362,50560539..50561585,50561637..50565307,50565385..50566151

Genome context

Sequence
000001 caccgcactc cagcctaggt gacagagcga gactccatct caaaaaaaaa aaaGATTCTG AACCATCCAT TCTCTGGGTT 000080
000081 GCACTTAAAT TTTTGGCTTC ATTAGGGATG ACTTGGAGCT GCTATGCTTG TCATGCAAAA TATATTCCTC CATGTTATTT 000160
000161 TCCATTTGCT AATCAGTTGG ATCCATTTGA GTCAAACTGT GCCTTTGTAG ACTTGGTTGC TTCTTTTGGA AGCTTCTTTC 000240
000241 AAAGTTTCTT TCTTTAGTTG CTTCTTTCAA ACTAGGTTAC AGAAACAAGA GCTGAATTAG ACAGCTGCAG AAAGCAGATT 000320
000321 TCTACTTTCA AATTTAAGAT GAAAAATATG AATATTGAGA GTATTTCTTT CATGTTGAAA TCAAGCAACT TTCTTGGTAA 000400
000401 AATTCTATTT CTTAACGCAG TCAGTAATTG GTGGGTGAGG TGACCACATG CCCTGAGGAG GCAGGTAGGC CCATCTagag 000480
000481 caggagctgg gctcatgcag atggatcttt gaccctacct ctgttcctca tagttggatg accctggcca actcacttca 000560
000561 ccctgttact ttccttatct gcaaaattca tgtctccaaa attcccttgt ggggttgctg tgaggatgag ttgaaatgat 000640
000641 gtgtgtGGTG TCACAGCATG ATTTCCTTGA TCCATGGAAG TTATTAAGTT GTTGGCAGTC CACTTCTTGC TTTTGTGGAG 000720
000721 TTGTATTTTT GTTCTAGCTC TTTTGTTCAC AGACGgggtg actatgtaat ttatcatcca aactgggaat taataaatga 000800
000801 aaatgaaaga ctaagtggag gagagtctgg gctcaaaggt gtggtcagga ctcttcccag gcaaacctga acatgtatgg 000880
000881 tcaccttCCC TAATACTAAT GCGTAGTCAG ACTGAGCAGC CTGTGGGAGA AAGCTGGCTG CCATCATTCT GCCACTCACT 000960
000961 GCTGGAGGGA CAACAAGGCA GAAGCAGTCT GGCGGGCCAA GCTAGACCTT GTCTGTGTCG GGAAGACTTA CATCATGTGC 001040
001041 TGGTAAAGAA CTAACAACTg ctgggcacag tggctcatgc ctataatccc agcactttgg gaggccaagg tgggaggatt 001120
001121 gcttgaggcc agaagtttga gaccagcctg gaccacctag tgagaccttg tctctacaaa aaaaaaaaaa aaaaagttaa 001200
001201 aaaaaaatta gctggtcctg gtgacatgca cctgtagtcc cagctactca ggaggctgag gaaggtggat cacttgagcc 001280
001281 caggagttag aagctgcagt gagctatgac tgcaccactg cactccagcc tgggcaactg agcaagacac tgtctcaaaa 001360
001361 aataaaaaGA CTAACAACCT GGTCTTTGAA AAATATTGAG Tggccaggca cggtggccca tgcctataat cccaatgctt 001440
001441 tgggaagcca aggcgagtga atcacttgag gtcaggagtt caacagtgaa actccataaa aaaaaaaaaa aaggaaaaaa 001520
001521 gaaaaagaaa aagaaaagga aaaaTTATTG AGTGAAGAAG CCTCTTCCCT TCCTCCCCCA CCACCTTATA ATTTGGCAAA 001600
001601 GGGCCTCCAT CTGTGGGGCC TAGATTGTTT TCTAGGAGAT AAAAATAGCC AGCATGTGTC AAGATAGCAT CAAACCTGCA 001680
001681 GGGGCAGGTG AGGACTCCAG AATGGGGTTA TAAGCAGGTC TTTTTTTTTT GTGAGCCAGG CTACATGCCA GGCTTTATGC 001760
001761 TACTGTGTTT ATTTCTCTTT GTTACTTGCC AGCACAGTGA TACTAGAACT TGCAGAAATT TAAGGGTAAC CGGTATTACT 001840
001841 TTAAAATACC TTTTCCCAGG CTCCCACTGC AGACCTTCAA AATCCATGTC CCCCAAGATT CTGTATATTT AAACTGGTGT 001920
001921 CCAGAGCAGT TTCTATGACC TCAAAAGGTT GGGAAACATT GCCCTCATGT TCAGAAAAGT CCTTTAAACT TTTCAGCTTT 002000
002001 GACTTAGTTG TGGAGAGATG TTGAAAAATG CCTTTTGTCA TCCCATTGCC TGTACCTCAG ATATGAAGGA AGAAATGACC 002080
002081 CAAGGAGGCT TCGATGGAGC CAAAATCATC AGAGGGAGAG TCTCGGGAGA AAGATGAATC TCCAGGGCAG GGGCCAGGGT 002160
002161 TTGTTGGTCT CTCTGCTTCT GGCCCCTGCA GTTACTCTTT TTCAGTGTCA ACCTCAGAGG AGCTGAGCTT TATTTTTATT 002240
002241 ATAAAAGCAG AGATTATCTG TCACTATACT TTATCAATCC TTTCTCTTCT TTCCCCATCA TTCTTCCAGA AAGAATTGTT 002320
002321 CATACTCCTT GTCTCTGCTT CCTTAATCTT CATTCACTTC Tgactgcagt ggaatgaaga ctgacctggg taacctgccc 002400
002401 tatgtgactg tgggcaggtt aatgaactac tccaaccctc agtttcccca ctgtgacttg taaaatgagg taatgcaaga 002480
002481 aaaatttcca acatagtccc tggcagatag taaatactta ttttttttat ttttattttt ttgaggtgga gtctcgctct 002560
002561 gctggtctcg aactcctgac cttgtgatct gcccacctca gcctcccaaa ctgctgggat tacagatgtg agctacctcg 002640
002641 tctggccAGT AAATACTTAA TTTTAACCCT TTCCCTTTCC CTACCTCTGG CCCCAAAACA GAGATAAAAT TTCTTTTCCT 002720
002721 AAAATCATTA GTAACATAAT TGAttttttt ttcttttttt ttttgaaaca gagtcttgct ctgtcacccg gtctagagtg 002800
002801 cagtggcgca atctcggctt actatcacct ctgcctccca ggttcaagtg acttttttgc ctcgcctcct gagtagctgg 002880
002881 gattacaggc gtgtgccaac acttcgttaa tgtttttgta tttttagtag agatggggtt tcaccatgtt ggccaggctg 002960
002961 gtAAAATCAT TAGTAACCTA ATTGGAAAAT TCTATCATTT TTCAGGGCTC AATTTACTTT TTTTTGGTCA ACATTTAAGA 003040
003041 CTATACTCAA TTCTTGAAAT TCCTATTCTT TTCCTATATT TATGCCACTT TTTCTAGCTT TTCCCTCCTG GTTCCAAAAA 003120
003121 CATCATCTCT AGCCTGCCTA GTATCAGAGG CACTCCCTGC CCAGTGTCAC ATGGGCAGTC ATTTAACAGC CATGATATCC 003200
003201 TGGCCCCACA TAATCATTTG CTCCCTAAAT AGGGACTTGT ATGAATAACC ACACAAGGAT TTCACTGTCT TTTTCCTTTA 003280
003281 CATACACCTT ACATTTAGGT GTATTAATGA AATTATGCAG CCATTGAAAA GTATCATGTT GAAAGCTATG GAAAGATGCA 003360
003361 GAAGTGATTA ACATCTTCAG TAGATATAGT GCAATGCAAA ATGCTACATG TTAAAAATCA GGGTGAGGTG CTATTCACCT 003440
003441 TAAGAAGACA CCATAAAggc caggtgcagt ggctcatgcc tgtaatccca gcactttggg aggctgaggt gggtggatca 003520
003521 cgaggtcagg agattgagac catattggct aacatggtga aaccccgtct ctactaaaaa tacaaaaaat tagccaggta 003600
003601 tggtggcaac ccaggaggcg gaggttgcag taagctgaga ttgtgccact gcactccagc ctgggtgaca gagcgagact 003680
003681 ctgtgttaaa aaaaaaaaaa agaaGGCACT ATAggccagg catggtggct caggtctgta atcccagcac tttgggaggc 003760
003761 caaggcgggc agatcacctg ggatcaggag ttcaagacca ccctggccaa catggtgaaa ccctgtctct actaaaaatg 003840
003841 caaaaattag ccaggcatgg tgggatacac ctataatccc agctacttcg gaggctgaag caggagaatc acttgccctt 003920
003921 gggaggcgga ggttgcagtg agccgagatt gcaccactac actccagtct gggcaacaga gggagacttt gtctcaaaac 004000
004001 aaaaataaaa acaaaaacaa aaaacaaaac aaaaacgaaa acaaaGGCAC TACAGCCGCC TAACACAAAG ATGATAGAAT 004080
004081 CTCATCCCTA CGCTGTAGCC ACACACAACC AAACCCAAGA TCCCCCAAGG AAAACGGATG AATAGAGAAC ACTAGCAAAT 004160
004161 GAGAATTAAG CATCACTTTG CTACAAATAC TCCAGTAAAC TGGGCCTGAG CACTGCTTTG GGCTTCCAGA CTGTAGGCTT 004240
004241 CCTCTATCTC CCAGGCATAA ATAGACTCTT ACCTTAGTGA GAGCACATca gacattagcc aagtgtggtg gtgcgtgcct 004320
004321 gtaatcccag ctacttggga gactgaagct ggagaatcgc tttaacccgg gaggtggagg ctgcagtgag ctgagatctc 004400
004401 accactgcac tccagcctgg tgacagagcg agactctgtc ttaaaataat aacaataata ataataatTC TCTGATGACT 004480
004481 CTTCAGGAAA TTCTCCTCAT TTTAAGAGTT ATGCTATGTT GTTCTGTGAA AATGAAGACT ACCAGCACTT CTGTGTAAAC 004560
004561 TCTAGGAAGA GTTTGACTAT AGGAGTATGG TAATACTTGC TGTGTAAAGA AAGGATGGAA AGCTACTTTG TTTTGATAAA 004640
004641 GTAAAATGTA TTGAAGTGCC TATTTTGAGT AAATTAAAAT TCAGAGTACT TACCATTTCA GCTGGTCTCA ACAGCAAATT 004720
004721 TTTAGAAGTC TGAAATACAT CAATACCGTG AAATAGGAGA CTCTTACTTC CTTAAGACAT TCATGAAATC ACtgggttag 004800
004801 gtgctagtaa tgcaatgatg agaaaacaca cacacacaca aacacacaca cacaatccca gctcttatgg ggtttacagt 004880
004881 caagtgggga gacaaacatt aatcaaataa ttacacaaat aaatttaaca aactgcagag tgcatgatgg aagagcagta 004960
004961 ttagatggta tgagatgatt aacagggtct gttaattggc cagaaacatc tgggaaagct cacctgagac tgtcagttgt 005040
005041 gctatggttg gaggatgggg atgggaggtg gctggtgagg gcctcgttag ggaaggaact aagggtgcag gagccctgct 005120
005121 gctggaagca gtatgagcct cgggtaacac aagggctaac ccaaatgcct acacagagta aggattgtgg gagaggaaga 005200
005201 agtgaCATGC CTCTCAAGTA TTAAAATTCA GTTTTCATCA TTTAAAAATA GAGTAACAAT AGGCAAACAG TTTGTGTTTT 005280
005281 TGACAGGGAT TGTAAGAGTC AATAAATGAT CACTGAACTC CTaggagggt cctaaaactg agcgtttgaa ttccagaatt 005360
005361 taaatgctgg gtagaaaagg atgacccagc aagtattcct gagtctgaag aagaaaagcc aggagtgagt ttagtgttac 005440
005441 taatggcaga ggaaaagagg gccttttaaa aaggaggcag tggtactcag agttgaaggc taccaaaaga tcaaggaaaa 005520
005521 tgagaactga aaaaatatct gttggagtta gcaacatgga ggccaatgac attcacaaaa TGCTTAAAAT GCACTGATAT 005600
005601 TGTATAATTA GTTTCAACCA TCTTCTGAAT TATCTGTGTC TTTTGCCTGA CTGGGAGGGG TGTGGGTTGC TTTAGATCAA 005680
005681 ATTCCACACT TCTGGAGATC TGGGGGCATT CTAGCAACAA TCCAGATAGT GTTACAAACA AGACCATTAT AAGATAAACA 005760
005761 CATTTTAACA AGGCATTTAT TACCCAATGC TTTAATATTA GAGAGACTCA ACTGGGCTCA TGTTAAAAAC AATGAAGCAT 005840
005841 CTATGTCTTA TGCAATGCTG TATAGGAAGT ATCTGATAAA GTCTAGATCC TCAGAACAAA AATTCTATGC ATTGGTCTAT 005920
005921 TGTCTTTATT TAAGACAAAG AGTGTGCTTA AGGTACAGGT ATCTACCAGC TACTGAAAAC TGCAGAACCC CTATCCATGA 006000
006001 TGTATCCTTA TTTATAGaat gctctaaaaa tgctctaaaa atCTCCCATA AAACAGGATG AAAGTAGTTT TCTAATCCAA 006080
006081 AATGTTATCA TAATTGACAC TTCTCAGGGT AAAAATTAGC ACATAATGGT GAGTGAGCTC AGAAAGATTC AAAATAAACA 006160
006161 ATTTATACAA ATCGAGCTCT CCAACAATTG CAAATATACA GTATCTATTA GTCTTTAGCT GAATTAATCA tttatttttt 006240
006241 atttttattt ttatttttga gatggagttt cgctcttgtt gcccaggctg gagtgcagtg gagtgatctc ggctcaccac 006320
006321 aacctccgcc tcccaggttc aagtgattct cctgcctcag cctcccgagt agctgggatt acaggcatgc gccaccacac 006400
006401 ccagctaact tttttgtatt tttagtaggg acggggtttc tccatgttgt caggctggtc tcgaactcct gacctcaggt 006480
006481 gatccgccca cctcagcctc ccaaagtgct gggattacca gcgtgagcca tcacactcag ccTAAATTAA TCATTTCTTA 006560
006561 AGGCCCTCAT AAAGTTACTG TTTGTAAAAA ATAAAATTCT ACATATATGG GAATTTAGAA AAACATTTAA TTGTCATAAT 006640
006641 TGAATGTAAT TAATCATTGT TAAAATATCA AAGCAATAAT ACATTTCAGA GGATATATAT GTAATGATTT TTAAGGCTCT 006720
006721 AGTGAAGCAT ACTCTAAAAT GTAGCTAAGC AATCTATTAA CACCGGCCTT TTACAGAATA CAGTTACAAT CATTCTAACA 006800
006801 AGATAAATTg gctgggcgca gtgactcatg cctgtaatcc cagcactttg ggaggccaag gtgggtggat cacctgaggt 006880
006881 caggagttca agaccagcct ggccaacatg tcgaaatccc atctctacta aaaatacaaa taattatcca ggggtggtgg 006960
006961 caggcacctg taaaccttgg caggctgagg caggagaatc gcgtgaacct gggagacggg ggttgcagtg agccaagatt 007040
007041 gcaccattac actccagcct gggtgacaga gcaagactct gtctgagaaa aaaagaaaga taaaTTATAC ATATGATTGA 007120
007121 TATACAAGCA AATTATATGT ATTCACACAT ATATAGTTTC CTTTTGGAAG ATTTTAGGAA AATATTTGTC ACaattaatg 007200
007201 atttttatat tttatttata aattGAGTAC TTTGACAAAA TATTATATTA AATGGTTCAG TAAGACTGAA CCATATATGC 007280
007281 TTGGTTTggc acagtggctc atacctgtaa ttccagcact ttgattggcc aaagcgggtg gatcattgga gtctgtgagt 007360
007361 ttgagactag cctaggcaac atggcaaaac accatctcta caaaaaaata caaaaattag ctaggtgtgg cagagggtac 007440
007441 ctgtaggcta gggaggctga ggtgggagga tccattgagc ccatgagacc taggctgcag tgagctgcaa ctgggcaata 007520
007521 gagcgagagc ttgtctcaaa ataaataaat aaataaataa ataaataaat TTCTTCTCTT TAAATCTTGG ACCTAGTCAT 007600
007601 CAGATCAATC TTTCTAAAAT TTTGTTTTCA TTCATGCATA TTATTCAGTG GCTCCCCACT TCCTACAAAA TGAAGTTCAG 007680
007681 CTCTTTGTTC TGACATGTAA ACCATTTCAA TATTTGGCTT CAAACATTat ttccaaagca ggccatgctc ctcatctcca 007760
007761 ccctgagctt gtggtgtgtt cctcaccttg aaagctcttc ctctttctct tcttcaaatc ttgtgatttt taaagatgca 007840
007841 gttcaactcc cacccacctc ccttatgaaa tcttccctta tgcttctagt gccttcctct gGCCTTGTCT TCATCACTTA 007920
007921 TTTTGGGTTT TAAACAACGA CTATTATGTA CTTAGTAACA GTACTTGTGT CCCttttttt tttttgagac ggagtttcgt 008000
008001 tcccgttgcc caggctggag tgcaatggtg tgatcttggc tcacgg
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Predicted Small Protein

Name NONHSAT033779_smProtein_2093:2362
Length 90
Molecular weight 9741.0371
Aromaticity 0.123595505618
Instability index 51.4943820225
Isoelectric point 4.77154541016
Runs 12
Runs residual 0.00837188808107
Runs probability 0.0385238179356
Amino acid sequence MEPKSSEGESREKDESPGQGPGFVGLSASGPCSYSFSVSTSEELSFIFIIKAEIICHYTL
SILSLLSPSFFQKELFILLVSASLIFIHF
Secondary structure LLLLLLLLLLLLLLLLLLLLLLEEEELLLLLEEEEEEELLLLHHHHEEEEHHHHHHHHHH
HHHHHLLLLHHHHHHHHHHHHHHHEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH
HHHHHLLLLHHHHHHHHHHHHHHHHHHHL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTT
TTTTTooooTTTTTTTTTTTTTTTTTTTi