NONHSAT033779
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033779 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
8046 nt |
Genomic location |
chr13+:50557620..50566151 |
Exon number |
5 |
Exons |
50557620..50559100,50559283..50560362,50560539..50561585,50561637..50565307,50565385..50566151 |
Genome context |
|
Sequence |
000001 caccgcactc cagcctaggt gacagagcga gactccatct caaaaaaaaa aaaGATTCTG AACCATCCAT TCTCTGGGTT 000080
000081 GCACTTAAAT TTTTGGCTTC ATTAGGGATG ACTTGGAGCT GCTATGCTTG TCATGCAAAA TATATTCCTC CATGTTATTT 000160 000161 TCCATTTGCT AATCAGTTGG ATCCATTTGA GTCAAACTGT GCCTTTGTAG ACTTGGTTGC TTCTTTTGGA AGCTTCTTTC 000240 000241 AAAGTTTCTT TCTTTAGTTG CTTCTTTCAA ACTAGGTTAC AGAAACAAGA GCTGAATTAG ACAGCTGCAG AAAGCAGATT 000320 000321 TCTACTTTCA AATTTAAGAT GAAAAATATG AATATTGAGA GTATTTCTTT CATGTTGAAA TCAAGCAACT TTCTTGGTAA 000400 000401 AATTCTATTT CTTAACGCAG TCAGTAATTG GTGGGTGAGG TGACCACATG CCCTGAGGAG GCAGGTAGGC CCATCTagag 000480 000481 caggagctgg gctcatgcag atggatcttt gaccctacct ctgttcctca tagttggatg accctggcca actcacttca 000560 000561 ccctgttact ttccttatct gcaaaattca tgtctccaaa attcccttgt ggggttgctg tgaggatgag ttgaaatgat 000640 000641 gtgtgtGGTG TCACAGCATG ATTTCCTTGA TCCATGGAAG TTATTAAGTT GTTGGCAGTC CACTTCTTGC TTTTGTGGAG 000720 000721 TTGTATTTTT GTTCTAGCTC TTTTGTTCAC AGACGgggtg actatgtaat ttatcatcca aactgggaat taataaatga 000800 000801 aaatgaaaga ctaagtggag gagagtctgg gctcaaaggt gtggtcagga ctcttcccag gcaaacctga acatgtatgg 000880 000881 tcaccttCCC TAATACTAAT GCGTAGTCAG ACTGAGCAGC CTGTGGGAGA AAGCTGGCTG CCATCATTCT GCCACTCACT 000960 000961 GCTGGAGGGA CAACAAGGCA GAAGCAGTCT GGCGGGCCAA GCTAGACCTT GTCTGTGTCG GGAAGACTTA CATCATGTGC 001040 001041 TGGTAAAGAA CTAACAACTg ctgggcacag tggctcatgc ctataatccc agcactttgg gaggccaagg tgggaggatt 001120 001121 gcttgaggcc agaagtttga gaccagcctg gaccacctag tgagaccttg tctctacaaa aaaaaaaaaa aaaaagttaa 001200 001201 aaaaaaatta gctggtcctg gtgacatgca cctgtagtcc cagctactca ggaggctgag gaaggtggat cacttgagcc 001280 001281 caggagttag aagctgcagt gagctatgac tgcaccactg cactccagcc tgggcaactg agcaagacac tgtctcaaaa 001360 001361 aataaaaaGA CTAACAACCT GGTCTTTGAA AAATATTGAG Tggccaggca cggtggccca tgcctataat cccaatgctt 001440 001441 tgggaagcca aggcgagtga atcacttgag gtcaggagtt caacagtgaa actccataaa aaaaaaaaaa aaggaaaaaa 001520 001521 gaaaaagaaa aagaaaagga aaaaTTATTG AGTGAAGAAG CCTCTTCCCT TCCTCCCCCA CCACCTTATA ATTTGGCAAA 001600 001601 GGGCCTCCAT CTGTGGGGCC TAGATTGTTT TCTAGGAGAT AAAAATAGCC AGCATGTGTC AAGATAGCAT CAAACCTGCA 001680 001681 GGGGCAGGTG AGGACTCCAG AATGGGGTTA TAAGCAGGTC TTTTTTTTTT GTGAGCCAGG CTACATGCCA GGCTTTATGC 001760 001761 TACTGTGTTT ATTTCTCTTT GTTACTTGCC AGCACAGTGA TACTAGAACT TGCAGAAATT TAAGGGTAAC CGGTATTACT 001840 001841 TTAAAATACC TTTTCCCAGG CTCCCACTGC AGACCTTCAA AATCCATGTC CCCCAAGATT CTGTATATTT AAACTGGTGT 001920 001921 CCAGAGCAGT TTCTATGACC TCAAAAGGTT GGGAAACATT GCCCTCATGT TCAGAAAAGT CCTTTAAACT TTTCAGCTTT 002000 002001 GACTTAGTTG TGGAGAGATG TTGAAAAATG CCTTTTGTCA TCCCATTGCC TGTACCTCAG ATATGAAGGA AGAAATGACC 002080 002081 CAAGGAGGCT TCGATGGAGC CAAAATCATC AGAGGGAGAG TCTCGGGAGA AAGATGAATC TCCAGGGCAG GGGCCAGGGT 002160 002161 TTGTTGGTCT CTCTGCTTCT GGCCCCTGCA GTTACTCTTT TTCAGTGTCA ACCTCAGAGG AGCTGAGCTT TATTTTTATT 002240 002241 ATAAAAGCAG AGATTATCTG TCACTATACT TTATCAATCC TTTCTCTTCT TTCCCCATCA TTCTTCCAGA AAGAATTGTT 002320 002321 CATACTCCTT GTCTCTGCTT CCTTAATCTT CATTCACTTC Tgactgcagt ggaatgaaga ctgacctggg taacctgccc 002400 002401 tatgtgactg tgggcaggtt aatgaactac tccaaccctc agtttcccca ctgtgacttg taaaatgagg taatgcaaga 002480 002481 aaaatttcca acatagtccc tggcagatag taaatactta ttttttttat ttttattttt ttgaggtgga gtctcgctct 002560 002561 gctggtctcg aactcctgac cttgtgatct gcccacctca gcctcccaaa ctgctgggat tacagatgtg agctacctcg 002640 002641 tctggccAGT AAATACTTAA TTTTAACCCT TTCCCTTTCC CTACCTCTGG CCCCAAAACA GAGATAAAAT TTCTTTTCCT 002720 002721 AAAATCATTA GTAACATAAT TGAttttttt ttcttttttt ttttgaaaca gagtcttgct ctgtcacccg gtctagagtg 002800 002801 cagtggcgca atctcggctt actatcacct ctgcctccca ggttcaagtg acttttttgc ctcgcctcct gagtagctgg 002880 002881 gattacaggc gtgtgccaac acttcgttaa tgtttttgta tttttagtag agatggggtt tcaccatgtt ggccaggctg 002960 002961 gtAAAATCAT TAGTAACCTA ATTGGAAAAT TCTATCATTT TTCAGGGCTC AATTTACTTT TTTTTGGTCA ACATTTAAGA 003040 003041 CTATACTCAA TTCTTGAAAT TCCTATTCTT TTCCTATATT TATGCCACTT TTTCTAGCTT TTCCCTCCTG GTTCCAAAAA 003120 003121 CATCATCTCT AGCCTGCCTA GTATCAGAGG CACTCCCTGC CCAGTGTCAC ATGGGCAGTC ATTTAACAGC CATGATATCC 003200 003201 TGGCCCCACA TAATCATTTG CTCCCTAAAT AGGGACTTGT ATGAATAACC ACACAAGGAT TTCACTGTCT TTTTCCTTTA 003280 003281 CATACACCTT ACATTTAGGT GTATTAATGA AATTATGCAG CCATTGAAAA GTATCATGTT GAAAGCTATG GAAAGATGCA 003360 003361 GAAGTGATTA ACATCTTCAG TAGATATAGT GCAATGCAAA ATGCTACATG TTAAAAATCA GGGTGAGGTG CTATTCACCT 003440 003441 TAAGAAGACA CCATAAAggc caggtgcagt ggctcatgcc tgtaatccca gcactttggg aggctgaggt gggtggatca 003520 003521 cgaggtcagg agattgagac catattggct aacatggtga aaccccgtct ctactaaaaa tacaaaaaat tagccaggta 003600 003601 tggtggcaac ccaggaggcg gaggttgcag taagctgaga ttgtgccact gcactccagc ctgggtgaca gagcgagact 003680 003681 ctgtgttaaa aaaaaaaaaa agaaGGCACT ATAggccagg catggtggct caggtctgta atcccagcac tttgggaggc 003760 003761 caaggcgggc agatcacctg ggatcaggag ttcaagacca ccctggccaa catggtgaaa ccctgtctct actaaaaatg 003840 003841 caaaaattag ccaggcatgg tgggatacac ctataatccc agctacttcg gaggctgaag caggagaatc acttgccctt 003920 003921 gggaggcgga ggttgcagtg agccgagatt gcaccactac actccagtct gggcaacaga gggagacttt gtctcaaaac 004000 004001 aaaaataaaa acaaaaacaa aaaacaaaac aaaaacgaaa acaaaGGCAC TACAGCCGCC TAACACAAAG ATGATAGAAT 004080 004081 CTCATCCCTA CGCTGTAGCC ACACACAACC AAACCCAAGA TCCCCCAAGG AAAACGGATG AATAGAGAAC ACTAGCAAAT 004160 004161 GAGAATTAAG CATCACTTTG CTACAAATAC TCCAGTAAAC TGGGCCTGAG CACTGCTTTG GGCTTCCAGA CTGTAGGCTT 004240 004241 CCTCTATCTC CCAGGCATAA ATAGACTCTT ACCTTAGTGA GAGCACATca gacattagcc aagtgtggtg gtgcgtgcct 004320 004321 gtaatcccag ctacttggga gactgaagct ggagaatcgc tttaacccgg gaggtggagg ctgcagtgag ctgagatctc 004400 004401 accactgcac tccagcctgg tgacagagcg agactctgtc ttaaaataat aacaataata ataataatTC TCTGATGACT 004480 004481 CTTCAGGAAA TTCTCCTCAT TTTAAGAGTT ATGCTATGTT GTTCTGTGAA AATGAAGACT ACCAGCACTT CTGTGTAAAC 004560 004561 TCTAGGAAGA GTTTGACTAT AGGAGTATGG TAATACTTGC TGTGTAAAGA AAGGATGGAA AGCTACTTTG TTTTGATAAA 004640 004641 GTAAAATGTA TTGAAGTGCC TATTTTGAGT AAATTAAAAT TCAGAGTACT TACCATTTCA GCTGGTCTCA ACAGCAAATT 004720 004721 TTTAGAAGTC TGAAATACAT CAATACCGTG AAATAGGAGA CTCTTACTTC CTTAAGACAT TCATGAAATC ACtgggttag 004800 004801 gtgctagtaa tgcaatgatg agaaaacaca cacacacaca aacacacaca cacaatccca gctcttatgg ggtttacagt 004880 004881 caagtgggga gacaaacatt aatcaaataa ttacacaaat aaatttaaca aactgcagag tgcatgatgg aagagcagta 004960 004961 ttagatggta tgagatgatt aacagggtct gttaattggc cagaaacatc tgggaaagct cacctgagac tgtcagttgt 005040 005041 gctatggttg gaggatgggg atgggaggtg gctggtgagg gcctcgttag ggaaggaact aagggtgcag gagccctgct 005120 005121 gctggaagca gtatgagcct cgggtaacac aagggctaac ccaaatgcct acacagagta aggattgtgg gagaggaaga 005200 005201 agtgaCATGC CTCTCAAGTA TTAAAATTCA GTTTTCATCA TTTAAAAATA GAGTAACAAT AGGCAAACAG TTTGTGTTTT 005280 005281 TGACAGGGAT TGTAAGAGTC AATAAATGAT CACTGAACTC CTaggagggt cctaaaactg agcgtttgaa ttccagaatt 005360 005361 taaatgctgg gtagaaaagg atgacccagc aagtattcct gagtctgaag aagaaaagcc aggagtgagt ttagtgttac 005440 005441 taatggcaga ggaaaagagg gccttttaaa aaggaggcag tggtactcag agttgaaggc taccaaaaga tcaaggaaaa 005520 005521 tgagaactga aaaaatatct gttggagtta gcaacatgga ggccaatgac attcacaaaa TGCTTAAAAT GCACTGATAT 005600 005601 TGTATAATTA GTTTCAACCA TCTTCTGAAT TATCTGTGTC TTTTGCCTGA CTGGGAGGGG TGTGGGTTGC TTTAGATCAA 005680 005681 ATTCCACACT TCTGGAGATC TGGGGGCATT CTAGCAACAA TCCAGATAGT GTTACAAACA AGACCATTAT AAGATAAACA 005760 005761 CATTTTAACA AGGCATTTAT TACCCAATGC TTTAATATTA GAGAGACTCA ACTGGGCTCA TGTTAAAAAC AATGAAGCAT 005840 005841 CTATGTCTTA TGCAATGCTG TATAGGAAGT ATCTGATAAA GTCTAGATCC TCAGAACAAA AATTCTATGC ATTGGTCTAT 005920 005921 TGTCTTTATT TAAGACAAAG AGTGTGCTTA AGGTACAGGT ATCTACCAGC TACTGAAAAC TGCAGAACCC CTATCCATGA 006000 006001 TGTATCCTTA TTTATAGaat gctctaaaaa tgctctaaaa atCTCCCATA AAACAGGATG AAAGTAGTTT TCTAATCCAA 006080 006081 AATGTTATCA TAATTGACAC TTCTCAGGGT AAAAATTAGC ACATAATGGT GAGTGAGCTC AGAAAGATTC AAAATAAACA 006160 006161 ATTTATACAA ATCGAGCTCT CCAACAATTG CAAATATACA GTATCTATTA GTCTTTAGCT GAATTAATCA tttatttttt 006240 006241 atttttattt ttatttttga gatggagttt cgctcttgtt gcccaggctg gagtgcagtg gagtgatctc ggctcaccac 006320 006321 aacctccgcc tcccaggttc aagtgattct cctgcctcag cctcccgagt agctgggatt acaggcatgc gccaccacac 006400 006401 ccagctaact tttttgtatt tttagtaggg acggggtttc tccatgttgt caggctggtc tcgaactcct gacctcaggt 006480 006481 gatccgccca cctcagcctc ccaaagtgct gggattacca gcgtgagcca tcacactcag ccTAAATTAA TCATTTCTTA 006560 006561 AGGCCCTCAT AAAGTTACTG TTTGTAAAAA ATAAAATTCT ACATATATGG GAATTTAGAA AAACATTTAA TTGTCATAAT 006640 006641 TGAATGTAAT TAATCATTGT TAAAATATCA AAGCAATAAT ACATTTCAGA GGATATATAT GTAATGATTT TTAAGGCTCT 006720 006721 AGTGAAGCAT ACTCTAAAAT GTAGCTAAGC AATCTATTAA CACCGGCCTT TTACAGAATA CAGTTACAAT CATTCTAACA 006800 006801 AGATAAATTg gctgggcgca gtgactcatg cctgtaatcc cagcactttg ggaggccaag gtgggtggat cacctgaggt 006880 006881 caggagttca agaccagcct ggccaacatg tcgaaatccc atctctacta aaaatacaaa taattatcca ggggtggtgg 006960 006961 caggcacctg taaaccttgg caggctgagg caggagaatc gcgtgaacct gggagacggg ggttgcagtg agccaagatt 007040 007041 gcaccattac actccagcct gggtgacaga gcaagactct gtctgagaaa aaaagaaaga taaaTTATAC ATATGATTGA 007120 007121 TATACAAGCA AATTATATGT ATTCACACAT ATATAGTTTC CTTTTGGAAG ATTTTAGGAA AATATTTGTC ACaattaatg 007200 007201 atttttatat tttatttata aattGAGTAC TTTGACAAAA TATTATATTA AATGGTTCAG TAAGACTGAA CCATATATGC 007280 007281 TTGGTTTggc acagtggctc atacctgtaa ttccagcact ttgattggcc aaagcgggtg gatcattgga gtctgtgagt 007360 007361 ttgagactag cctaggcaac atggcaaaac accatctcta caaaaaaata caaaaattag ctaggtgtgg cagagggtac 007440 007441 ctgtaggcta gggaggctga ggtgggagga tccattgagc ccatgagacc taggctgcag tgagctgcaa ctgggcaata 007520 007521 gagcgagagc ttgtctcaaa ataaataaat aaataaataa ataaataaat TTCTTCTCTT TAAATCTTGG ACCTAGTCAT 007600 007601 CAGATCAATC TTTCTAAAAT TTTGTTTTCA TTCATGCATA TTATTCAGTG GCTCCCCACT TCCTACAAAA TGAAGTTCAG 007680 007681 CTCTTTGTTC TGACATGTAA ACCATTTCAA TATTTGGCTT CAAACATTat ttccaaagca ggccatgctc ctcatctcca 007760 007761 ccctgagctt gtggtgtgtt cctcaccttg aaagctcttc ctctttctct tcttcaaatc ttgtgatttt taaagatgca 007840 007841 gttcaactcc cacccacctc ccttatgaaa tcttccctta tgcttctagt gccttcctct gGCCTTGTCT TCATCACTTA 007920 007921 TTTTGGGTTT TAAACAACGA CTATTATGTA CTTAGTAACA GTACTTGTGT CCCttttttt tttttgagac ggagtttcgt 008000 008001 tcccgttgcc caggctggag tgcaatggtg tgatcttggc tcacgg |
Predicted Small Protein
Name | NONHSAT033779_smProtein_2093:2362 |
Length | 90 |
Molecular weight | 9741.0371 |
Aromaticity | 0.123595505618 |
Instability index | 51.4943820225 |
Isoelectric point | 4.77154541016 |
Runs | 12 |
Runs residual | 0.00837188808107 |
Runs probability | 0.0385238179356 |
Amino acid sequence | MEPKSSEGESREKDESPGQGPGFVGLSASGPCSYSFSVSTSEELSFIFIIKAEIICHYTL SILSLLSPSFFQKELFILLVSASLIFIHF |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLEEEELLLLLEEEEEEELLLLHHHHEEEEHHHHHHHHHH HHHHHLLLLHHHHHHHHHHHHHHHEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH HHHHHLLLLHHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTT TTTTTooooTTTTTTTTTTTTTTTTTTTi |