NONHSAT034172
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034172 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1092 nt |
Genomic location |
chr13+:64311843..64316936 |
Exon number |
2 |
Exons |
64311843..64312482,64316485..64316936 |
Genome context |
|
Sequence |
000001 AAGAGGGGCT GGCTCTCTGT CCCCTCGTCG CGGGGGTTGC ATCCCCCCCC TGTGATGGGG GTCCCAAGAG CCAGGGGGGG 000080
000081 AAGAAGGGCT GGCTCTCAGT CCCCGCCTCa ctagcagggg agttgctgcc aaggccctca aacatggggg ccatccttta 000160 000161 gaaaccctgt ctagttgttt agagacatag gccaccgacc tcatccaggg ccccacagtt tgggttaaaa gtccacctgc 000240 000241 catcttttct ctctctgaca catacaatgg aaaaggcttt gtcagatcgg gtaaccccag ggctgaagct gccagaagtt 000320 000321 tttcctttaa ctcatgaaag acttgctgtt gttaggatcc cccttccaaa ggttcccggt ccccgacccc tttgtgacct 000400 000401 catacaaagt cttggcttat actgcaaagt ttgggatcca cagtctacaa aaccccacag ctcctgagaa ttctctcgcc 000480 000481 tgccttcggc ccttaggctc tggtagattg caaataacat gctttctttc tgttcccggg tggcttcgga cccctgtcgg 000560 000561 atcggaaatc ccaagtaagg tacctgccct gggcagattt gagctttctt cttggacacc taatacccac agtcctccag 000640 000641 TGTTTTAGAC GCCCAGCTGC ACAACTTGAT TGCCTTACAA ATGACCTGCT TCCAGGATGC GGAAATTCCT AATTTCTTCT 000720 000721 GTGACCCTTC TCAACTCCCC CATCTTGCAT GTTGTGACAC CTTCACCAAT AACATAATCA TGTATTTCCC TGCTGTCATA 000800 000801 TTTGGTTTTC TTCCCATCTC TGGGACCCTT TTCTCTTACT ATAAAATTGT TTCCTCCATT CTGAGTGTTT CATCATCACG 000880 000881 TGGGCAGTAT AAGGCCTTCT CCACCTGTGG GTCTCACCTG TCAGTTGTTT GCTGATTTTA CGGAACGGGC GTTGGAGGGT 000960 000961 ACTTCAGTTC AGATGTGTCA TCTTCCCCGA GAAAGGCTGC AGTGGCCTCA GTGATGTACA CGGTGATCAC CCCATGCTGA 001040 001041 ACCCCTTCAT CTACAGCCTG AGAAACAGGC ATATTAAAAG TGTCCTGCGG CG |
Predicted Small Protein
Name | NONHSAT034172_smProtein_680:934 |
Length | 85 |
Molecular weight | 9279.6459 |
Aromaticity | 0.154761904762 |
Instability index | 49.4988095238 |
Isoelectric point | 5.96246337891 |
Runs | 13 |
Runs residual | 0.0207764634516 |
Runs probability | 0.0449567214273 |
Amino acid sequence | MTCFQDAEIPNFFCDPSQLPHLACCDTFTNNIIMYFPAVIFGFLPISGTLFSYYKIVSSI LSVSSSRGQYKAFSTCGSHLSVVC |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLEEEELLLEEEEEELLLLEEEEEEEEEEEE EEEELLLLEEEEEEELLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiii iiiiiiiiiiiiiiiiiiiiiiii |