NONHSAT034173
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034173 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1170 nt |
Genomic location |
chr13+:64311843..64316936 |
Exon number |
3 |
Exons |
64311843..64312416,64314899..64315042,64316485..64316936 |
Genome context |
|
Sequence |
000001 AAGAGGGGCT GGCTCTCTGT CCCCTCGTCG CGGGGGTTGC ATCCCCCCCC TGTGATGGGG GTCCCAAGAG CCAGGGGGGG 000080
000081 AAGAAGGGCT GGCTCTCAGT CCCCGCCTCa ctagcagggg agttgctgcc aaggccctca aacatggggg ccatccttta 000160 000161 gaaaccctgt ctagttgttt agagacatag gccaccgacc tcatccaggg ccccacagtt tgggttaaaa gtccacctgc 000240 000241 catcttttct ctctctgaca catacaatgg aaaaggcttt gtcagatcgg gtaaccccag ggctgaagct gccagaagtt 000320 000321 tttcctttaa ctcatgaaag acttgctgtt gttaggatcc cccttccaaa ggttcccggt ccccgacccc tttgtgacct 000400 000401 catacaaagt cttggcttat actgcaaagt ttgggatcca cagtctacaa aaccccacag ctcctgagaa ttctctcgcc 000480 000481 tgccttcggc ccttaggctc tggtagattg caaataacat gctttctttc tgttcccggg tggcttcgga cccctgtcgg 000560 000561 atcggaaatc ccaagctcca gtagattgca aatgacctgc ttactttctg ttcccgggct gcgttctgac acctgtcgga 000640 000641 tagtaaatcc caagtaaggt accagccgtc ggcagatttg agctttcttc ttggacacct atacccacag tcctccagTG 000720 000721 TTTTAGACGC CCAGCTGCAC AACTTGATTG CCTTACAAAT GACCTGCTTC CAGGATGCGG AAATTCCTAA TTTCTTCTGT 000800 000801 GACCCTTCTC AACTCCCCCA TCTTGCATGT TGTGACACCT TCACCAATAA CATAATCATG TATTTCCCTG CTGTCATATT 000880 000881 TGGTTTTCTT CCCATCTCTG GGACCCTTTT CTCTTACTAT AAAATTGTTT CCTCCATTCT GAGTGTTTCA TCATCACGTG 000960 000961 GGCAGTATAA GGCCTTCTCC ACCTGTGGGT CTCACCTGTC AGTTGTTTGC TGATTTTACG GAACGGGCGT TGGAGGGTAC 001040 001041 TTCAGTTCAG ATGTGTCATC TTCCCCGAGA AAGGCTGCAG TGGCCTCAGT GATGTACACG GTGATCACCC CATGCTGAAC 001120 001121 CCCTTCATCT ACAGCCTGAG AAACAGGCAT ATTAAAAGTG TCCTGCGGCG |
Predicted Small Protein
Name | NONHSAT034173_smProtein_758:1012 |
Length | 85 |
Molecular weight | 9279.6459 |
Aromaticity | 0.154761904762 |
Instability index | 49.4988095238 |
Isoelectric point | 5.96246337891 |
Runs | 13 |
Runs residual | 0.0207764634516 |
Runs probability | 0.0449567214273 |
Amino acid sequence | MTCFQDAEIPNFFCDPSQLPHLACCDTFTNNIIMYFPAVIFGFLPISGTLFSYYKIVSSI LSVSSSRGQYKAFSTCGSHLSVVC |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLEEEELLLEEEEEELLLLEEEEEEEEEEEE EEEELLLLEEEEEEELLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiii iiiiiiiiiiiiiiiiiiiiiiii |