NONHSAT034225
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034225 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3007 nt |
Genomic location |
chr13+:68599997..68628150 |
Exon number |
6 |
Exons |
68599997..68600178,68603707..68603877,68605817..68605851,68610323..68611278,68617558..68617845,68626776..68628150 |
Genome context |
|
Sequence |
000001 AAGAACCTTT TATTAACACA ACAATGATAT TTTAAAAAGG AAGAATAATA ATTTCCAAGA AAAAGTACAG GAATTTATTT 000080
000081 TATGTCTTTT TGAATTTAGA CAGAGAATTA TTTCATAGAC ATCATTTAGA CAAAGTTAGA CTGGCCTGAA TTTAACTGCA 000160 000161 GGTCCTGAGA CTTATTATTA AGGGTCATAT TTGCCAATGT CTGGTGAGAA ATAGACTGGG AAGATGAAAA GCATCAAAAG 000240 000241 ATTTCTAAGG GCTACCAAGA TTATTGAGGG GATACTGAAG AACATGTTTT TTATTTAAAT ATTTCCTAGG ACTGACCTTC 000320 000321 ACTCTTTTTT CAGTGAATCT ACCATTAAAA AGGGGCTTGA GTTGCTTCAA AGACTGAGTC CCTTAAATgg tacctcatct 000400 000401 attacactca ggagcagcta cagctagagt caccaagaag ggtcgctgac atggtagttg atgctagcag gtcagctggg 000480 000481 aggtcagctg cggctttctg gcagagtatc tacatgtggt ctctctctca aggtgacttg gacttcaaac aggatggtac 000560 000561 ccatgtccca ctggagaaca actcaagcat caatattcca aaatttgtga tgcttcaaga ttgattgagg atcaatcaca 000640 000641 gtttcccaga actggaaagg tcctactttt cccctgctct acttgttaag ctgcctccac agcctgctca tgttcaaggg 000720 000721 cctggagaaa taaaatgttt cttcatgaaa gcatggcaat gtcacattgc agaagtgcat gtgggaataa acatattgtt 000800 000801 gtggccaact ttggaaaata taaATTCTCA AAATCACTTT GGAAAGGGTT TCTCTTTTGA CAGAAATCAA AAGGTAACCA 000880 000881 TCTAAAAGCA Cttctccttt cattctgggc acagagctgg ataatatttc taatttctgt aactcttagg aatggctata 000960 000961 tcacttacat ttagccaatg gaatgcacac acaaatgtgt attccacccc ctggtctgag ccatagttct ccgcagtgat 001040 001041 atccctcata ttatttctct tttcacttta ctattgtgac aatgcctagg gaaacctagg gaggcatatg ttaaagttgg 001120 001121 cagaatttct gtgaccctga gtctaatttg atcctcaatg actTTCATCC CTGTGttgag tgtgagcaaa atctatcaat 001200 001201 aggatgagat agtacttcca tgagtacgtt atagtttata gcaaatgaga tttttacagt gtaattagag tTGGAAATCA 001280 001281 CTGCTTTTTA ACTGTGTCAA ATGAGTCATT AAACTTGTCC TCTGTGTAAT TTTTGTTGTT TTTTGAAGAA TCTGTGGCCA 001360 001361 TCCTGGAAAT AAACAGAGTG ACATGGTGAC AATTGtggat cctctccttt gggataatgc actgtgtatc ccattgcaag 001440 001441 tgcttctcag acatcagtgc aacgacctct tcagtaatct gacctaaaat gtaagagact tgagagcaaa gatcatgttt 001520 001521 tgttcattat tttactccta gtacctagga cagtccccac cagcaaatgc ctgttcagtg atggatATGC TAAAATCTCC 001600 001601 TTTATTATAG ATGCATTTAT TTCATGGAAA AAGGAACTGT TGAGCAACTG ATTTTTGATT ATTTCCTGAG TTGTTCTGCA 001680 001681 GGCTTGAAAG GATAGTTTCT TGTTGGTCAA ATCACAGAAA AGTCTTATAC AAGAATTATC ATCGGGTCAA GTTCTCAGAC 001760 001761 TTACATTGTA ATTAATTGCT TAGCCTCATT ACTTCCACAC TATATAATAG TTTTACTCTT TGTTCTTTCT ATTAAACTGG 001840 001841 TTTTACTTTA GAATTTTGTT TCACTGTAAT GAATGCCATA AGAATATTCT TTAATTCGAT CATTATTATT ATTATTAttt 001920 001921 tgagacggag tctcacacta tcgtcggggc cggagtgcag tggtgtgcaa tctcggctca ctgcaacctc tgcctcctag 002000 002001 gtacaaggga ttctcctgcc tcagcctccc gagtagctgg gattacaggc gcctgccacc atgcttggct aattttttgt 002080 002081 atttttgaag agacggggtt tcaccatgtt ggccgggcta gtccccaact cgtgacctcg tgatctgccc acctcggcct 002160 002161 cccaaagtgc tgggattaca ggcatgagcc accgcgccca gccTCGGTGT TTATTTTTAC AAACAAGATA GCTCACATTT 002240 002241 CCCTCCAACA CCATTTTAAA ATAAAGCTTG TCATTTCTAT TTGACCTTTT GTTATCTCTT CCTGATTTTC TGAGAATGAT 002320 002321 TTATACTAAA TATTATATCT TTTATATTGT GTACATATAT ATGTTATTTA TAatcccata tctgaatatc tgaattccaa 002400 002401 aatactccaa aatctgactt tttgagcaca gcactgacat gacactcaaa ggaaatgctc tttggagcac tttggatttt 002480 002481 ggattttcag attagggata ctttacggtt tcaaaatctg aaaatctctg aaatctgtaa catttctggt ctccagtgtt 002560 002561 ttggattggg aatagtcaat ctgTAACATA CATGCATATT ACACTGTGTT TTCTTTAATT AAAGTAATTG CATTAATTTG 002640 002641 TCTAAGCTAG GGATGTATCA AAAGTACATA TTTCATTTTG ATCCTTAAAT CAATTTTGAC ATATTTCTTC TTATGATTAA 002720 002721 ATACACATGA TTCATAGAAG AAATAAGGTC CTCCACTGGG ATCTTTTTGT TTTGTAAAAG ACTTTCATTA TACAGctctg 002800 002801 ttggctattt atccagaccc agctcctgtc ataaaccttt atgctttatg ttacagtaat aatgaattat ttgcaattcc 002880 002881 taaaatatca caattGCATT ATATAATTCC AATTGTTGGC Attgaagcca aggactgtga tttttccata gttattgtct 002960 002961 cagcaactag cagtatggtg gcataaatat ctgttgaaAC AACAAAC |
Predicted Small Protein
Name | NONHSAT034225_smProtein_1868:1999 |
Length | 44 |
Molecular weight | 4651.4544 |
Aromaticity | 0.046511627907 |
Instability index | 75.7023255814 |
Isoelectric point | 11.524597168 |
Runs | 7 |
Runs residual | 0.0054873268879 |
Runs probability | 0.0428243369421 |
Amino acid sequence | MNAIRIFFNSIIIIIIILRRSLTLSSGPECSGVQSRLTATSAS |
Secondary structure | LLHHHHHHHHHHHEEEEHHHHLLLLLLLLLLLLLLEEEEELLL |
PRMN | LLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL |
PiMo | i?????????????????????????????????????????? |