NONHSAT034391
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034391 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2774 nt |
Genomic location |
chr13-:77564117..77567079 |
Exon number |
2 |
Exons |
77564117..77566655,77566845..77567079 |
Genome context |
|
Sequence |
000001 TGACCGCCGG AGGCTGTGTC TTCTCTGTCA AAGGCTGGAA TCGACCTCCC AGGTGTGCGG GCTCTGTCCC CGACTTAGGA 000080
000081 CCGGCGTCCT ACCTCCAGGC TGAAGACTGG ACAAAAGCGG TGACAATCTT CCCGGTCTAA CCAGGACTGC AGGAGACGGG 000160 000161 GATTCCCGGG ATGCGCGACT TTTGAGGGCA AAACTGGGAA GTCCCAATAA GGACTTCGGA TCAGGTTCTG ATCAGGACTG 000240 000241 TCCTGAGTCT GCCGCAAGTG ACCAGAGGGG ACGAAAGGTC CCAGGGCTGC ACGTAACGAG CGGCTGCGAC TCCCCAGTCC 000320 000321 TCAACTTTGC TCTCAAGTGC GCTCCGAGCG TCACCCGGCG CTGTCCCCGC ACCATCTCGT GACCCGACAC AAACCACGGT 000400 000401 GAGCAGGGGT CCCCGCCCCA GCACCCCATC CCCCATCGTC AACGCCGACC CCAACCCCGA CAGTGCGCGC GCCGCCGCAC 000480 000481 TCACTTGTAG GGCACCGGCC AGTGGCGCCG GGAGGGGATG CCCGAGACCC GGGACCAGCC CGGAACCACC GCGAGCCAAA 000560 000561 GCAGCGCCAG GGCCCAGCAC CAGGAAGCGC GTCCCCGAgc cgcgcccgcg ccccgccgcA TCTCGGCGCC CTGTGCCGTG 000640 000641 TCTACCTCCT GCGCCATCAG GCTGCACCCA GTACTTCCGG AGCCTCTCGA GGCCTGCGAC GCCGGTGGGA GGAGCATGCG 000720 000721 CGGAGCCGCC AGTCCGGGAC GCGGGGCGCC TTGCCCCTGC GCGTCAGCTC CAGAGCTTGG CCCCAAGCGC AGGTTCCGGC 000800 000801 GCATGACACC Tccccgcgcc cggcccgcgg cggcTTCCAC ACTTTGCAGT CCAGGAAGGT GCTTTGGTCT GGCTCCCAGG 000880 000881 AGAATTCGAT CCAGACCTGG GGCGTCATCT TTTATGAATT GACCTGTCCT TGCCCAAAAG CCACCACCAA AACCAAAAAT 000960 000961 CTGTCACCGG GGCTCCTCCC AACACCGAAC TTTTACCCCA TCCCACAGGG CCCACGCTAG GTGTCAACAA ACGTTGAGTG 001040 001041 AACGAGAATG TGTATTTGGA GCTGAGGGTG CAGGGCTGGG GGTGCAGTGA GGAAGAAGGG ACAATAGTGC GGAAATGGCT 001120 001121 CGTCGTCACC CGACCTGGGC CAGTCATAAC AGTGGTTAAC ACTGACAATA TGTGGTCCCT GCCACTCCCC AAGTGCTTAG 001200 001201 TGGGGAAATG ACTCGTCCTC ACTCGACCTG GGCCAGTGAT AACAGTGGTT AACACCGACA ATATGTGGTC CCTGCCACTA 001280 001281 CCCGAGTGCT GCCGAATCTA CCCCCTCCCC TACCGCTCCC CTCACAGGCA GGTGTTCCTT GCTTGGATCT GTCACTTCAC 001360 001361 TGGAAAGAAG TTTCTGCATC ACCTTCTCTT CTTTGACTCT TCAACTAGGT CAAGAAAACA ATGGCATCAA TTACCCGGCT 001440 001441 TTTGAGGAGC CTCTTGTGGC ATGCTTTGCT GTTAGGCACA AATACTGACT TAAGTCTATA CGTAGTACAT TCAGGGCCTT 001520 001521 GCCATAGTCA CTTGTTTTTA CCAGACAGCA GTTTTGCAGG GCCTTAGACC GGGACTTTCC AATTCCTTCA CTTCACCCAC 001600 001601 AACTCGTGTG AAGCATCATA ATGTTTGTAA GCCTATGGGA ATAAGCAAGG TGGCTTCGGT AGCCGGAGAT GACCACCACA 001680 001681 ATCCATTGGA GGATATGTAG CTTGTGGGGG TGTCACTGAC TTCCTTGGGC CCTCCAGGTC TCTTGATTAC ATATGGGACT 001760 001761 CAGTACCCTG CCCCAAACAC ACACTCCTTT GCCCACTTGC TGCTCCAGGT TTGGGGGTTT TGCGGAGGTT CAGGCTGGGC 001840 001841 TGCATTTTAC CATACGTTTG TCTAAGCGTT TTGATAGCTA CCTAGCTCTC CTCCGTATAC TATGGCCAAA TTCAAAATTA 001920 001921 CCAAGGCTAA ACTGGCTTCT TCAAAGACCT GCCCAAGATA AGAGGGGGAA GCATTCTAGC CCTGAGAGCT GAAATGTAAT 002000 002001 GTCTGATTTG AAGGGCACCT GAAGGATTCC GTGGCCCCAC ACTTGAGCCT AGCTTAAAAA GCAATCAGCA GGAACAGCTT 002080 002081 TAAAAAAAAA AAAAAACATT GATTAGAGCA TTTACAAATC CTGGAACCAT ACACAGTATG ATGTATGAGG GCCACAGTAG 002160 002161 ATGGCCTCAA CAACCAGAGC CTCCGTGGCT GCCTGGAGAG CGGTGATGCA GGCAGCAGCT TCATGAGATA TTTGCAGTTT 002240 002241 AATCCAGTCA TCTGCAAGCA CAATCTGCCC ATCAGATTGG ACTTTCTTGG AGGCAAAGAG AAGCAACTGC AGTGGGGTGA 002320 002321 CTAAAGTCAT GCCTTTAGCA GAGATGGCTC GAGTTCAAAT CTTTTCACCA AATACAAAGA AGGGAGATAG GTACTTCATG 002400 002401 TCTTGGCTAC TAAAAGGACA ATTAACAGTA GATGGTTCCA GGTTCCATCT ACTGTTAGta gagggccaca gtagaacctc 002480 002481 ccattcagtt caggacttcc cagagctaca aaaacaaatt caggttgacc ttgttcagtg gtggaggcct ctggtcttgc 002560 002561 ttctgccatc tgtctcttca ttctgtgtgc agggagcttt catggtaaga aagcacttcc tagtattggt ttttattttt 002640 002641 tatttttttg gagacggagt ctccttctgt cacccagcct ggagtgcagt gatgtgattt cggctcactg caacctccgc 002720 002721 ctcccgggtt caagcaattc tcctgcctca gcctccctag tggctgggta caag |
Predicted Small Protein
Name | NONHSAT034391_smProtein_1262:1444 |
Length | 61 |
Molecular weight | 7342.5628 |
Aromaticity | 0.183333333333 |
Instability index | 76.5033333333 |
Isoelectric point | 9.92340087891 |
Runs | 8 |
Runs residual | 0.0164007092199 |
Runs probability | 0.0389727963258 |
Amino acid sequence | MWSLPLPECCRIYPLPYRSPHRQVFLAWICHFTGKKFLHHLLFFDSSTRSRKQWHQLPGF |
Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLHHHHHEEEELLLLLLHHHHHHLLLL |
PRMN | - |
PiMo | - |