NONHSAT034642
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034642 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3916 nt |
Genomic location |
chr13-:90712501..90771971 |
Exon number |
6 |
Exons |
90712501..90712866,90718982..90719064,90731381..90731516,90758201..90758456,90758837..90760915,90771027..90771971 |
Genome context |
|
Sequence |
000001 AGCGGAATTC TAACCCCAAC TACCACACAG AGTGACCTTA TTTGGAAATA GAGTCTTTAT GAAGACAATT AAGATGTGGT 000080
000081 CATTACAGTG GGCTCTAATA CGATTTGACT GGTGTCCTTG TAAGAAGGGG AAATTTGAAC ATAGACACAT ACATAGATAG 000160 000161 GGAAGGAAAT GCGAAGACAC ACAGAAAGAT GACCATCTTA CAAGCCAACA AGAGAGGTCT TAAGCAGATC CTCTCACAAC 000240 000241 CTCAGAAGGC ACCAACACTG CCAACATTTC ACTCTCTGAC TTCCAGCCTC CAGAAGTGTG AGACATAATT TTCTGTTTAA 000320 000321 GGCGCCTGAT TAATAATAAT TTGTTGCAGC AGCCACGGCA AACGGAAACA TTTGGGTTTC TAAAGACGGA AGCAGCTGGG 000400 000401 CGCGGAGACT CAGGACTGTA ATCCCAGCAC TTTGGGAGGC CGAGGCAGGC GAATCATGAG GTCAGGAGAT CAGGACCATC 000480 000481 CTGGATAACA CGGTGAAACC CCATCTCTAC TAAAAATACA AAATATTAGC TGGGCATGGT GGCGGGCGCC TGCCTGTAGT 000560 000561 CTCAGTTACT CTGGAGGCTG ACGCAGGAGA ATCACTTAAA CCAGGGAGGC GGAGGTTGCA GTGAGCTGAG ATCACACCAC 000640 000641 TGCACTCCAG CTAGCATGAC AGAGCGAGAC TCCGTCTCAA AAAGAAATAA TAATAAAATA AAGAAGGATG CTCTGAAAAG 000720 000721 GGAAAGGAGA AAAGGGAGGC ATTTGTGGAG TAGGTGCTCA TCACTTTCTC AAGGATATTT ACAAATGTAA TCATATTTAC 000800 000801 CGCACAGAAT CCTCGTAAAA GTGACTTAAC TTCCTGACAG AGCATGAGCA CCATCATCTC TGACAAACAC TCCCTTTCTA 000880 000881 GCCTCACGCA TTTCAAGGAA ATCACTTCTA ACTACAAGCA GCCAGAAAAG AGCAGACAGT AAAACACAGA GATCAGGATA 000960 000961 GAATTGCTGT TTGACATCTC TCCCAACTTC CTTATGCTCT CCGGAGCAGA ACACTTCACA GCAGTTATCA ATCCCAGGGG 001040 001041 GAGGATCCAA ACACTTCTTC CTATTGCATC TTGGAACTGG AGTCACTAAG AAAAATGCAA CATGGTCAAG CACTGGGTAG 001120 001121 AACAACACAC TTTACTTACA GAGAGAAGAA ACAGAACAAG ATAAGCTTAA TAGAGTGCTG TGATCCCTTA TGGCTAGCAC 001200 001201 GTCACCCAGG CAGGTCACCC AGGCAGGTGG CTGAGAATGG GCAATTGGCC TACACGCACC CCTGTCGGGC TGAAGCAGAA 001280 001281 GAACCCAACC CCTCCTCCAT GGAGTCTGAA ATAGTAAAAA CTGGGTATGT TCCTGAGTAC CATTGACTTA CGAGCTTAAA 001360 001361 CGGAACAAAG GAGTGCACCC TGAGCTTATA AGAAAAGATA CTTGCATATA AGACAATAGG CCCTGCAGAG GCTATCTGGG 001440 001441 CTTTTGATGT TTTGCAATAA AAAATTTCTA GGATCAAGGC CCATTTTTAT GCAGTCAACT GGGGGTGGAA AGACCCCACA 001520 001521 AACTACCTTT CCCAACAGCC TGTCTTCCTT GTTGAGAAAT TCTCTCAAGG TATTTACCAG CAGTAAGTTG TTTGATCCTC 001600 001601 TAGAATGTCT AATGTCATCT TGATGTTGGA TTATTGTGTT ACCAAGCTAA CACAAGTGAT GCCAAGAATA GCCTGAGAAA 001680 001681 TGCAGCAGTA AGATGGGGAT TTATGACTGA CCCACCCCCT TGCTGGCGGG TGAGAGGATG CCATCTCTGT TGGAAGGTGA 001760 001761 GGCTCGAATC ATTCTTGGCA CAAAGTCCCA GGTCAGTCAT CTGCCAGTTG GTGTTAGCCA GTGTCAAAGG ACAAGACTAC 001840 001841 AATACATTTA GTTAATGATA TAACTGGCTT TCTTTCATGA TTCATGAATT GGAGTAGCAT TCTATTCTGT AGAATAAGAG 001920 001921 CTTCCCTGAG CTGAGCAGAA AAGGATGGCT TCATAGGCAG AAAAAGACTG AAGAAAGAAA TAATGAATGG AAAGTGAATT 002000 002001 GCTTGTTCCA GGGTTACTTT CCTTACAGAA TTAAAACGAG GGGACTTCCT TATTATGCTA AATTGAATTG ACTGGAATCT 002080 002081 TGCTTGTTTT TCTTTTTGAA ATTTTGCCCA TTTCAAAGTT CAGTTTGATT AAGTGGCACT TATCAGGAGT GACTCCATTC 002160 002161 TGGTTTGGTC TGGTCTACTG AGGCCTAGTG CAGGAAGGCA GTTCAAGACA ATGACCTCCC ATAAAATTTG GTTAACATCA 002240 002241 TGCTTTATTA TCAGTCACAT GAAAACTGCC TGAATTGTCA CAGAATGGAG TGGCAAAGTT GGAGACTACA TGTGGATCTA 002320 002321 AGAGCTTAGA CGCTTAATTA TAATAGCTGA TCTAGCTACT CCTGCCTCTG AAAGACGAAC TTGTCAACCT TTAATATGAA 002400 002401 TATCCCTTAA AGGAACCTAA AGGACACTTG GTGGTAAATT GACTATATTG AGCTTCTCCC TTCCACGAAG GTCGTGGATA 002480 002481 CCCATTCTGG TTATAAGTCT GCTTTGCCAC CCTTGAGTCT GAGCCAAAAT CCTTCACTGG TGCTTATGGT ATGCCTGATA 002560 002561 CACAGCGTAG CTTCTGATCA GGAAACCCTC TTGACAGTGA AGGATGTGAG GGGCAAAGCC CAAACCCATG GGCTTCAATC 002640 002641 ATTGTATCAC ACACAGACCC ATCCATAAGC AGCTGGTATC ACAAGGTGTT GGAAGAGCTT CTAAATGCAC CCTCCTCAAG 002720 002721 TCTCAGGTGT AAGACAATAA TCAAAAAGGA TGTGGTATTT CATAGGAAGA AAAAAGTTGT TCATCATTAG AAAGAACAGA 002800 002801 AGGTCTTGAA ACCAAGGAGG AGAAAAACGA GTAACTCCAC TTACTACACT TCCTATTGAT TTAATGAAGG ATTTGCTTCC 002880 002881 CATCTCTGCA AATCTGGGTT CATCAGCTTG AAGGTCCTGT TCCTCAAAGC TGGTGTATTT TGGTGACTAG AAGCAGCAAG 002960 002961 TGTCCCAATG GACTACCATT TATGACTACC AGGGAAGTTC AGACTCCTTG TGCCCAAAGT TTACCAGGAA GAAAGGCCTG 003040 003041 CAGATACAAT AGAAAAGCCT TCACACAAAT CTGCTGGAGA AGTAGATCCG GGTGAAACAG CAGGAAAACT GTCGTAAAAA 003120 003121 TGCATATCTC AGATCTCCTA CTAGTAGGGT CATAAGCAAC CCATGACTCC AGCTGCTGAG GTCTAAATCT GTCACTACTT 003200 003201 ATGCTCGGAG ACTATTTCCT GTGGAGGAAG TATTCTTAAC CAATTACTGC ATTTGGCTGT GATATGAAAG TTGGCTCAGT 003280 003281 CCTGCTGGAT GGAGGCTGAG GCAAATGTCA CAGATGATGG AGACATGACC AGGGTGATGG GAATGGCGTT GAAGAGAAGT 003360 003361 TGCCTGGCTT GATATGTAGT TGAAAAGTAG AACTTACAGG ACTTGCTAAT AGTCTACAGA ACCAGCCATC ATGCCAAAGT 003440 003441 GACTTTCAGC ATTGAACTAC ACCTCACAAT ACCTGCATTC TCTTTTTTAC TACAACTTGC TGCAGATTTC TTTTTTTTTT 003520 003521 TTTTTCTGGT AGCAGAAATC CCCATTTGAT GCCAATTCCT CATCATCATA AGGGAATGTA ATCAAGGATT CTTTCCTAAT 003600 003601 AATGTGAATA GATGTGCAGT GACTGACAGA GGTGGTACAG CGGGTTTATT CTTCTTATGG CAGTGATCTT CTGACTGTAA 003680 003681 CCCAAGGGTG AAAGCTCATG CACTCTTAGC AACAAGTAAA TTGTACGAAC ATGCCCCAGA TATTTCTTCA TTTATTTGTA 003760 003761 AATTATATAC AGTTTAGTCT ATTCTGAAAA TATACAGTTT TTTAAAAATT GTAAAACAAA TATGTTTTTC TTTACTGTGT 003840 003841 AAAATTAAAT GTCACTGAGA GTAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AGAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT034642_smProtein_1094:1345 |
Length | 84 |
Molecular weight | 9506.5697 |
Aromaticity | 0.0722891566265 |
Instability index | 55.3265060241 |
Isoelectric point | 6.95526123047 |
Runs | 11 |
Runs residual | 0.00749665327979 |
Runs probability | 0.0472531354885 |
Amino acid sequence | MQHGQALGRTTHFTYREKKQNKISLIECCDPLWLARHPGRSPRQVAENGQLAYTHPCRAE AEEPNPSSMESEIVKTGYVPEYH |
Secondary structure | LLLLLLLLLLEEEEEELLLLLLEEEEEELLLLLLLLLLLLLHHHHHLLLLEEELLLLLLL LLLLLLLLLLLEEEELLLLLLLL |
PRMN | - |
PiMo | - |