NONHSAT034642

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT034642

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3916 nt

Genomic location

chr13-:90712501..90771971

Exon number

6

Exons

90712501..90712866,90718982..90719064,90731381..90731516,90758201..90758456,90758837..90760915,90771027..90771971

Genome context

Sequence
000001 AGCGGAATTC TAACCCCAAC TACCACACAG AGTGACCTTA TTTGGAAATA GAGTCTTTAT GAAGACAATT AAGATGTGGT 000080
000081 CATTACAGTG GGCTCTAATA CGATTTGACT GGTGTCCTTG TAAGAAGGGG AAATTTGAAC ATAGACACAT ACATAGATAG 000160
000161 GGAAGGAAAT GCGAAGACAC ACAGAAAGAT GACCATCTTA CAAGCCAACA AGAGAGGTCT TAAGCAGATC CTCTCACAAC 000240
000241 CTCAGAAGGC ACCAACACTG CCAACATTTC ACTCTCTGAC TTCCAGCCTC CAGAAGTGTG AGACATAATT TTCTGTTTAA 000320
000321 GGCGCCTGAT TAATAATAAT TTGTTGCAGC AGCCACGGCA AACGGAAACA TTTGGGTTTC TAAAGACGGA AGCAGCTGGG 000400
000401 CGCGGAGACT CAGGACTGTA ATCCCAGCAC TTTGGGAGGC CGAGGCAGGC GAATCATGAG GTCAGGAGAT CAGGACCATC 000480
000481 CTGGATAACA CGGTGAAACC CCATCTCTAC TAAAAATACA AAATATTAGC TGGGCATGGT GGCGGGCGCC TGCCTGTAGT 000560
000561 CTCAGTTACT CTGGAGGCTG ACGCAGGAGA ATCACTTAAA CCAGGGAGGC GGAGGTTGCA GTGAGCTGAG ATCACACCAC 000640
000641 TGCACTCCAG CTAGCATGAC AGAGCGAGAC TCCGTCTCAA AAAGAAATAA TAATAAAATA AAGAAGGATG CTCTGAAAAG 000720
000721 GGAAAGGAGA AAAGGGAGGC ATTTGTGGAG TAGGTGCTCA TCACTTTCTC AAGGATATTT ACAAATGTAA TCATATTTAC 000800
000801 CGCACAGAAT CCTCGTAAAA GTGACTTAAC TTCCTGACAG AGCATGAGCA CCATCATCTC TGACAAACAC TCCCTTTCTA 000880
000881 GCCTCACGCA TTTCAAGGAA ATCACTTCTA ACTACAAGCA GCCAGAAAAG AGCAGACAGT AAAACACAGA GATCAGGATA 000960
000961 GAATTGCTGT TTGACATCTC TCCCAACTTC CTTATGCTCT CCGGAGCAGA ACACTTCACA GCAGTTATCA ATCCCAGGGG 001040
001041 GAGGATCCAA ACACTTCTTC CTATTGCATC TTGGAACTGG AGTCACTAAG AAAAATGCAA CATGGTCAAG CACTGGGTAG 001120
001121 AACAACACAC TTTACTTACA GAGAGAAGAA ACAGAACAAG ATAAGCTTAA TAGAGTGCTG TGATCCCTTA TGGCTAGCAC 001200
001201 GTCACCCAGG CAGGTCACCC AGGCAGGTGG CTGAGAATGG GCAATTGGCC TACACGCACC CCTGTCGGGC TGAAGCAGAA 001280
001281 GAACCCAACC CCTCCTCCAT GGAGTCTGAA ATAGTAAAAA CTGGGTATGT TCCTGAGTAC CATTGACTTA CGAGCTTAAA 001360
001361 CGGAACAAAG GAGTGCACCC TGAGCTTATA AGAAAAGATA CTTGCATATA AGACAATAGG CCCTGCAGAG GCTATCTGGG 001440
001441 CTTTTGATGT TTTGCAATAA AAAATTTCTA GGATCAAGGC CCATTTTTAT GCAGTCAACT GGGGGTGGAA AGACCCCACA 001520
001521 AACTACCTTT CCCAACAGCC TGTCTTCCTT GTTGAGAAAT TCTCTCAAGG TATTTACCAG CAGTAAGTTG TTTGATCCTC 001600
001601 TAGAATGTCT AATGTCATCT TGATGTTGGA TTATTGTGTT ACCAAGCTAA CACAAGTGAT GCCAAGAATA GCCTGAGAAA 001680
001681 TGCAGCAGTA AGATGGGGAT TTATGACTGA CCCACCCCCT TGCTGGCGGG TGAGAGGATG CCATCTCTGT TGGAAGGTGA 001760
001761 GGCTCGAATC ATTCTTGGCA CAAAGTCCCA GGTCAGTCAT CTGCCAGTTG GTGTTAGCCA GTGTCAAAGG ACAAGACTAC 001840
001841 AATACATTTA GTTAATGATA TAACTGGCTT TCTTTCATGA TTCATGAATT GGAGTAGCAT TCTATTCTGT AGAATAAGAG 001920
001921 CTTCCCTGAG CTGAGCAGAA AAGGATGGCT TCATAGGCAG AAAAAGACTG AAGAAAGAAA TAATGAATGG AAAGTGAATT 002000
002001 GCTTGTTCCA GGGTTACTTT CCTTACAGAA TTAAAACGAG GGGACTTCCT TATTATGCTA AATTGAATTG ACTGGAATCT 002080
002081 TGCTTGTTTT TCTTTTTGAA ATTTTGCCCA TTTCAAAGTT CAGTTTGATT AAGTGGCACT TATCAGGAGT GACTCCATTC 002160
002161 TGGTTTGGTC TGGTCTACTG AGGCCTAGTG CAGGAAGGCA GTTCAAGACA ATGACCTCCC ATAAAATTTG GTTAACATCA 002240
002241 TGCTTTATTA TCAGTCACAT GAAAACTGCC TGAATTGTCA CAGAATGGAG TGGCAAAGTT GGAGACTACA TGTGGATCTA 002320
002321 AGAGCTTAGA CGCTTAATTA TAATAGCTGA TCTAGCTACT CCTGCCTCTG AAAGACGAAC TTGTCAACCT TTAATATGAA 002400
002401 TATCCCTTAA AGGAACCTAA AGGACACTTG GTGGTAAATT GACTATATTG AGCTTCTCCC TTCCACGAAG GTCGTGGATA 002480
002481 CCCATTCTGG TTATAAGTCT GCTTTGCCAC CCTTGAGTCT GAGCCAAAAT CCTTCACTGG TGCTTATGGT ATGCCTGATA 002560
002561 CACAGCGTAG CTTCTGATCA GGAAACCCTC TTGACAGTGA AGGATGTGAG GGGCAAAGCC CAAACCCATG GGCTTCAATC 002640
002641 ATTGTATCAC ACACAGACCC ATCCATAAGC AGCTGGTATC ACAAGGTGTT GGAAGAGCTT CTAAATGCAC CCTCCTCAAG 002720
002721 TCTCAGGTGT AAGACAATAA TCAAAAAGGA TGTGGTATTT CATAGGAAGA AAAAAGTTGT TCATCATTAG AAAGAACAGA 002800
002801 AGGTCTTGAA ACCAAGGAGG AGAAAAACGA GTAACTCCAC TTACTACACT TCCTATTGAT TTAATGAAGG ATTTGCTTCC 002880
002881 CATCTCTGCA AATCTGGGTT CATCAGCTTG AAGGTCCTGT TCCTCAAAGC TGGTGTATTT TGGTGACTAG AAGCAGCAAG 002960
002961 TGTCCCAATG GACTACCATT TATGACTACC AGGGAAGTTC AGACTCCTTG TGCCCAAAGT TTACCAGGAA GAAAGGCCTG 003040
003041 CAGATACAAT AGAAAAGCCT TCACACAAAT CTGCTGGAGA AGTAGATCCG GGTGAAACAG CAGGAAAACT GTCGTAAAAA 003120
003121 TGCATATCTC AGATCTCCTA CTAGTAGGGT CATAAGCAAC CCATGACTCC AGCTGCTGAG GTCTAAATCT GTCACTACTT 003200
003201 ATGCTCGGAG ACTATTTCCT GTGGAGGAAG TATTCTTAAC CAATTACTGC ATTTGGCTGT GATATGAAAG TTGGCTCAGT 003280
003281 CCTGCTGGAT GGAGGCTGAG GCAAATGTCA CAGATGATGG AGACATGACC AGGGTGATGG GAATGGCGTT GAAGAGAAGT 003360
003361 TGCCTGGCTT GATATGTAGT TGAAAAGTAG AACTTACAGG ACTTGCTAAT AGTCTACAGA ACCAGCCATC ATGCCAAAGT 003440
003441 GACTTTCAGC ATTGAACTAC ACCTCACAAT ACCTGCATTC TCTTTTTTAC TACAACTTGC TGCAGATTTC TTTTTTTTTT 003520
003521 TTTTTCTGGT AGCAGAAATC CCCATTTGAT GCCAATTCCT CATCATCATA AGGGAATGTA ATCAAGGATT CTTTCCTAAT 003600
003601 AATGTGAATA GATGTGCAGT GACTGACAGA GGTGGTACAG CGGGTTTATT CTTCTTATGG CAGTGATCTT CTGACTGTAA 003680
003681 CCCAAGGGTG AAAGCTCATG CACTCTTAGC AACAAGTAAA TTGTACGAAC ATGCCCCAGA TATTTCTTCA TTTATTTGTA 003760
003761 AATTATATAC AGTTTAGTCT ATTCTGAAAA TATACAGTTT TTTAAAAATT GTAAAACAAA TATGTTTTTC TTTACTGTGT 003840
003841 AAAATTAAAT GTCACTGAGA GTAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AGAAAAAAAA AAAAAA
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Predicted Small Protein

Name NONHSAT034642_smProtein_1094:1345
Length 84
Molecular weight 9506.5697
Aromaticity 0.0722891566265
Instability index 55.3265060241
Isoelectric point 6.95526123047
Runs 11
Runs residual 0.00749665327979
Runs probability 0.0472531354885
Amino acid sequence MQHGQALGRTTHFTYREKKQNKISLIECCDPLWLARHPGRSPRQVAENGQLAYTHPCRAE
AEEPNPSSMESEIVKTGYVPEYH
Secondary structure LLLLLLLLLLEEEEEELLLLLLEEEEEELLLLLLLLLLLLLHHHHHLLLLEEELLLLLLL
LLLLLLLLLLLEEEELLLLLLLL
PRMN -
PiMo -