NONHSAT034879
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034879 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3841 nt |
Genomic location |
chr13+:99083411..99087251 |
Exon number |
1 |
Exons |
99083411..99087251 |
Genome context |
|
Sequence |
000001 TGTTACCTAC CGCTCAACAC CTTCCTCCTG CGGCCACTGC ACCGGCTCAT GCACTACAAG CAGGTCCTGG AGCGGCTGTG 000080
000081 CAAACACCAC CCGCCGAGCC ACGCCGACTT CAGGGACTGC CGAGGTGAGT GCTGGGAGCC TGCGCCACCT GGTGCCCATG 000160 000161 CCACAGTTCA GGCCGGGTGC TCCCAGACTG AGCCCAGCCA GGGAGGGGCT CCCCGGGGAG AGAGGTCAGC TGATGCTGGG 000240 000241 TCCCAGGTTT TCATCAGGGT GGGCGCCGGT TTTTATTCCT GCTCTGGTGT TTGGTTACAT CTTGAttttt tttttttttt 000320 000321 tttgagactg agtctcactc tgtcgcccag gctggagtgc aatggtgcga tctcggctca ctgcaacctc cacctcccgg 000400 000401 gttcaagcga ttctcctgcc tcagcctctg gagcagctag gattacaggc gcccgccacc acgcccggct aatttttgta 000480 000481 tttttagtag agacggggtt tcaccgtgtt ggtcaggctg gtctcgaact cctgaccttg tgatccgccc gccttggcct 000560 000561 cccaaagtgc tgggattaca ggcgtgagcc acggtgcccg gccACATCTT GATCTTTCCG TAAAGAAGGT GCTGATGATC 000640 000641 GTCAGGACCC CTTTCTTCCT TTGCCTCTTG CATGCATTTT CTCCTTTGGT TCCTGGGTGG TTTTGTGCAA AGATCCCTAG 000720 000721 AGAAGCTCCG CTTACAGTTA GCCCCCACCC AGGAAGCTTG CTTCTACCCA CGTGACGGAA ACTCATCCCT CTACCATGGC 000800 000801 CACAGAACAT AGCTTGTAAG AAATCCTGTT GCTCATTGCT ACCGGTCATT TGTAATGTGC CCATCAGCAT AATGAGCATC 000880 000881 TCTCCTGTAT TAACTCTTCC CAAGCCTCAG GCACAGGTGA GTTcatctta catatgggga ctacggagac tagagaggtt 000960 000961 aaggaacctg cccagagtca cacagcttgg agggaaatga tttggaacct aaatctAGAA CCCATGGTCA CAACCGTCCT 001040 001041 GCCCTTCTAT CTCATGGACA GTCCTACCCG CTCGTACTTG CTCAGCCCCA GGCCAGGtgc tgtgtacctg atactgtacc 001120 001121 aacgttcaca ccattactcc tttaaggacc cctttagatc aattgcatta tcccatttta cagagcgtga cgctgagact 001200 001201 caggggaagg gacttgctgg gtcactcaga ggtcagagcc gcattccaga cctgcttttc ccacggggcc acgcgtgctc 001280 001281 ttCTGAACGG AAGTCGTTGT GTCTGGTGTC ACAGTTGGTC TGTGGGTGTC TGCCCTCCCT GGCCTAGCAT GCGGAGTTGG 001360 001361 CCCTGCGTAG GTGGCTCCCG CACAGGTGGC CCGAATCCAC ACACCCACTA GGAGGGCAAG GCCCTTATTC CTTGCCTGAA 001440 001441 ATGTCAGAAA CACCTCCCAA CTCTTTAGCC AAAACTGTCA TCTTTTTTAA AAATCCATCT TCTTACACCT TGGCTTAAAA 001520 001521 CCTGGGTGAC GGCTGACTGC CTCAGGCTAA AATCGGAAGT CTTCATGACC TGGCCTGGCC AGCTCTCACA CCCCAGCTGC 001600 001601 GCAGCGAGCA CCTGTACTGG GCGTGTGAGG GAGAAGGAAC AGTGCGGCCC CTGACCTCAC AGGACCCACT GGAGGGTCTG 001680 001681 CAGGCAGGTA CCTGGGTGCT GGAGGGTCTG CAGGCAGGTA CCTGGGCAGT GGCAACCCTG CACTAGGGCC GTGAGAGAGA 001760 001761 AGTGGACGGT GCAGTTGGAG CCGGGGCGTT AGGGGGTGTT GGGGGGATCT CGAAGGGAAA TGGTGTCTAA GTTCAGAACT 001840 001841 AACATGTAAA TAGGAGTTTT CCTGGGTGAA AGGAGGGTGT GGAGAATAGA GTTAGAAACA GCACAAGCTC AGGTTCAGAG 001920 001921 GGGACAGAGA CCGGAACATT GCCAAAAGCG TGCAGGGCAC AGGGAGAGCC ACAAAGTGAG GCTGCGACAG AAAGCAGCGG 002000 002001 CTACATCCCA CTGCGCCCCA TGGACCCCGC AAAGCCGTAA CCTAAGAGCA GAGGCCGAAC AGGAAGTGTT TTAAGGAGGG 002080 002081 AAACAGTGAT ACCAGGCTTG TTCTAGAAAA ACCGTTGtta atatctagaa tatatggcgg actcctacaa attagttgtt 002160 002161 aaaaaaaggc aacccaatag gtagaagact tggcaaagta attgagacag tgacagttca cagaagggga aCACAGGTGC 002240 002241 CTCCTGACAT GGTTTGTCAT TGACCATCTG TCTTTAAAAC AAACCATGCT ggccaggggt ggtggctcac acctgtaatc 002320 002321 ccagcacttt gggaggccaa gatgggagga tcactggagg ctgggagttc aagagcagcc tgggcaacac agtgagacct 002400 002401 tgtctctaca aaaaatttaa aaattacgag catgcaccta tagtgccggc tactcaggag gctgaggtgg gaggatcgca 002480 002481 tgagcccagg agttggaggc tgcagtgagc tatgattgca ccacagccca ggcgacagac ctagacccag tctctaaaaa 002560 002561 caaaaCCATG CTGCCtcttg cctccacacc ttggtgcatt ccgttccttc tgcttagagt cctggccacc acctccttgg 002640 002641 cctttcctgg ccagctctct ctcgtccttt aagcctcagc tTGTGCCTGG CACCTGATGT TGAGCTGACC TCCTGTCCGC 002720 002721 CTTGTCCTGT CACACTGGCA TTGCCTGTGT GTTGGCCGAG CCCGGAGGAA AGGACCCAGG GCCCCTCCTG GCTCTGAGGA 002800 002801 CTCCTCAGAT CTGTCGCCCA TGGGGGTGAG AGCGGTGTGT GGTTTTGAAG GCGCTGTTCT TGGCGGACTC ATCCAGTTCC 002880 002881 ACTCTGCTAT TTCTCTAAAC AGTACCCAAT GGAGATAGGC TATCCTTGAT GATTGAGGAA GAGAGTGCTA GCTAGCTTAA 002960 002961 AGCATGAAGT GGCAGCACTG TAGGAGCCTA GGTTTCCAGA GCTAGAGGGA CACTGAATGC CAAGGGCTGT TCCCAGCACG 003040 003041 CCCCTGCCCC TGAGCACCGG GGGCCGGGGT GCCATCATTC CATCATTTTC CTCTCAGAGC TCCCCACTAC CCCCCAGCCC 003120 003121 TGCCACTGAG CACTGGATGC CAAGTAAATG TTTATTGGAC CAAACTGGGT GGTCATGTCT GAAAATCGAG CAAGGCCTGG 003200 003201 GATTTGTCAC TATGGCTGAG ACCGCATTCT CTGATAAGCC TGGGAGAATT TAACTCGCAT CCTTGGGGGA AAAAACAAGA 003280 003281 AAACTAAATG CTTCCCTTCC AACACTGAAA TGCTGGGGGA AAGCAGTGAA AGAGGTATTT AGAGTTCTGA AGACTGAAGT 003360 003361 TCAGTCAACA AGTATTTCTT GCTTTTCTTG ACCAAACTAC CCAAGTGCTC AGCCGCTGGG GACTTGAGTG CCACCCAAAC 003440 003441 TTGTCAGCCA CTGGGGACTT GCGTGCCACC CAAGCTTGTA TTAATCAGGC ACTAGCTTCT TTTAAATATT GGATGCCCAC 003520 003521 CAGTATAGGG GAGCCGTGCC TCTATCGAAA AATAAAggcc tgatgtggtg gctcatgcct gtaatcccag cactttgggc 003600 003601 ggccaaggcg tgtggatcgc ctgaggtcag gagttcgaga ccagcctaac caacatggtg aaaccttgtc tctactgaaa 003680 003681 atacaaaatt agccgggcgt ggtggcacgc acctgtaatc ccagctactc gggaggctga ggcaggacaa tcacttgaac 003760 003761 ctgggggcag aggttgcagt gagctgagat tatgccattg tactccagcc tgggcaacaa gagcaaaact ctgtctcaaa 003840 003841 c |
Predicted Small Protein
Name | NONHSAT034879_smProtein_671:811 |
Length | 47 |
Molecular weight | 5422.1672 |
Aromaticity | 0.152173913043 |
Instability index | 73.9784782609 |
Isoelectric point | 9.18426513672 |
Runs | 7 |
Runs residual | 0.00918737060041 |
Runs probability | 0.032566179625 |
Amino acid sequence | MHFLLWFLGGFVQRSLEKLRLQLAPTQEACFYPRDGNSSLYHGHRT |
Secondary structure | LLHHHHHHLHHHHHHHHHHHHHLLLLLLEEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |