NONHSAT035054
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT035054 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1446 nt |
Genomic location |
chr13+:106359259..106384107 |
Exon number |
5 |
Exons |
106359259..106359978,106380939..106381076,106382176..106382308,106382664..106382807,106383797..106384107 |
Genome context |
|
Sequence |
000001 CTGGAAAGGT AGGGAGGTAT GGATATGGAC AAGCTATGCC AAGGAGCAGG GCTTTGTCAT GGAGAGTGAC TAGGTGCTTT 000080
000081 TACATAGGAA AGTCACCTGA TAATATTAAA ACCTGTGAAA TATCACTCTG GTGGAAGTGT GAATGAATTT GAAAGGGGTG 000160 000161 TAACACTGTT CTACTTTGTT TACTCCTCAG TACCCTTGGC TGTGTACATT TGAGTAAAGA GAGCACTATA AAATCAAAAA 000240 000241 CCAATGAAAT GGTTTCCAGA ACACAGAACT ATTAAGCTTA AGAAAAGGAC AGAAGGAACT GAAGAGAGAG GAACTGTTTT 000320 000321 GGAGCATCAC ACTTCCACCT CAGAAGAAAT AAGGAAGGAA GGAGGAGGGT GTTCCCACGG CTCTTCAACC AGGCCGGCTC 000400 000401 TTCAGCCTAC ATCCCCATCT CATCAAGTAA AAGGGATTTT TCAACTGGAC CAACCAGATG GTTTAACAGT GCACTCCCAC 000480 000481 ACCATTCAAC TACGCAAGGG AGATACACTT AACATATGCA GTCGTATAAC ACCTACTAAC ATTTTCAAAC ATTAAACCTT 000560 000561 TAAAAAAGAG TTCTAAAGAA ATAGAAGCTT GAAGTATCAT CTCTCAAGTA TATAGACACT ACTTCATGGT GTGGTAATAT 000640 000641 ATGCATATAG AAGCTAGTAA ACACCTCCAG GAGATGCAAA AGGAATTAGA ACTGCCACAA GGTGCAAGCA AAACCTTGAG 000720 000721 CTTCTTTAAA ATATGAAGAC TTCGAAGTTA TTTATCCAAA CCAACCTGAT CATTTCTTAA GAGTGAATAT ACCTTGGAAG 000800 000801 ACGTGTCCTG CCTTTAGTAG CGTCACAATG GATTACATCC TCTATAAAGC AGTCTGGGAT ATTCTGCCCA ATCAGAGGCT 000880 000881 AACATCTGCC acaagacaaa tatggtgcct gcccccatgg agctcatatt cgaatggaga aaatgtcaac aagtatccca 000960 000961 cggagtgaac acttcaaaag gagaagcaca ggtgagaaaa tcgaatttgg acaccgttga ggagactatt gcagtcatcc 001040 001041 aagctcaaga tggtggagct tcatccttga gaataaccaa tggggataga tttaagagac acttagagtc tgcagccaac 001120 001121 agggctgaat gagcaGAGAG TTATGATTCA GAAGATCATC TAAAATTGAA CAGCTGCCAC TACTGGCAAT AAGTCTACTG 001200 001201 CCATTTGGTA GATAACCTTC TTATCACACA GAAAAATATC AGTACAGACA AATAGACCGC AAAGAAAATG AGACCATCAG 001280 001281 CAAAGAAGAT AAAGAAGTTT GTACAAAGCA ACTTTTTATA AATGGATGGC TGTCAGGCAA AAATAAATTT CCTGTGGACA 001360 001361 AGACCAAGAG CAAGGCAAGA GGAAAATAAA CATGTTTAAA CTATTGGAGA GTCCATAATT TAAATATAAA CTCTTCTGTT 001440 001441 GAGTGG |
Predicted Small Protein
Name | NONHSAT035054_smProtein_827:967 |
Length | 47 |
Molecular weight | 5463.1183 |
Aromaticity | 0.152173913043 |
Instability index | 48.1239130435 |
Isoelectric point | 6.07940673828 |
Runs | 6 |
Runs residual | 0.0309265010352 |
Runs probability | 0.0491079314608 |
Amino acid sequence | MDYILYKAVWDILPNQRLTSATRQIWCLPPWSSYSNGENVNKYPTE |
Secondary structure | LLLLHHHHHHHHLLLLLLLHHHHEEEELLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |