NONHSAT036897

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT036897

Source

NONCODE4.0

Same with

,

Classification

sense

Length

890 nt

Genomic location

chr14+:53177264..53180750

Exon number

3

Exons

53177264..53177886,53178128..53178242,53180599..53180750

Genome context

Sequence
000001 AACCTAATGT GTAATGTGTT CAGCATGTGC CTGTCATGTA GCAAAGGCAT GAGTGATGGT TGCTGGGTTT TGGGGCTTTA 000080
000081 AATTTAAAGC ATTTTAATAA AAATCTCTAA GGGGAAACCG TGCATTTTTC TCTACTCTCA TGAGCATTTA ACACATTCTT 000160
000161 CCCAGAAGCT GTACATTTCA AAATAAATCT GATGAGCACA CCTTTAAAAT GCTTCCCTTT CCTTTCCCTA AAATGTTCAC 000240
000241 TAAGGGATTT TTCTATAAAT GCTTTGGTAG CAATTCCCAA AGTCACTGTA CCATTGCTGC CTCAAGCTTT GTGTGTTAGT 000320
000321 CATTTCACAT TTTACACTGA GATTACACAA AGGGGCATGC TTTTAAGGAG CAGGTGGAAA TCACTTTGAA TTACTTATTT 000400
000401 TATAAGCCAT TTTGTTAGCA TAGAGTTTAT AATCTGATAT TTGTGTTCTC TCTGGAGGGT AAAAATGAGT GTTTGGCTTC 000480
000481 TAAATATTAA ACTCTCGTTA GAGTGTTATT CCGTTTTTAA GTGTTGATGT AATATCTTTT GTTTTACAAA ACTAGCTTGA 000560
000561 CAAAAGTAAG CTGAAGCCAG GAACAAGAGT TGCTTTGGAT ATGACTACAC TAACTATCAT GAGATATTTG CCGAGAGAGG 000640
000641 TGGATCCACT GGTTTATAAC ATGTCTCATG AGGACCCTGG GAATGTTTCT TATTCTGAGA TTGGAGGGCT ATCAGAACAG 000720
000721 ATCCGGGAAT TAAGAGAGGT GATAGAATTA CCTCTTACAA ACCCAGAGTT ATTTCAGCGT GTAGGAATAA TACCTCCAAA 000800
000801 AGGCTGTTTG TTATATGGAC CACCAGGTTG GTATTGAATT ATTTCTACTC CACCAATAAG ATAAATGAAT TAAGGAATTA 000880
000881 AAAAAAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT036897_smProtein_191:388
Length 66
Molecular weight 7415.8738
Aromaticity 0.107692307692
Instability index 55.3678461538
Isoelectric point 9.92559814453
Runs 10
Runs residual 0.00355769230769
Runs probability 0.0455131602191
Amino acid sequence MSTPLKCFPFLSLKCSLRDFSINALVAIPKVTVPLLPQALCVSHFTFYTEITQRGMLLRS
RWKSL
Secondary structure LLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLLHHHHHLLLEEHHHHHHHHHLHHH
HHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL
LLLLL
PiMo oooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii
iiiii