NONHSAT036899
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT036899 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2939 nt |
Genomic location |
chr14+:53188218..53194708 |
Exon number |
3 |
Exons |
53188218..53190592,53190683..53190754,53194217..53194708 |
Genome context |
|
Sequence |
000001 aataaagcaa gaaagtgggg ggcgggcatg gtggctcact cctgtaatcc taatggtttt ggaggccgag gcagaaggac 000080
000081 cgcttgaggc caggagtttg aggttgcagg gagctatgat catgtgactg cactccagtt tggcaagacg ctgtttcagg 000160 000161 ggaaaaaaaa agaaaagggg gataggaaat tagggaagtg ccaggaccag gcatgaggat atgtttttaa atgacaggga 000240 000241 ggattagcac agggaaggcc ttaccaagaa ggtaatttat tttttagaga cagggtctca ctcttgccca ggctggagtg 000320 000321 caatggtgtg atcccagctc actgcaactt ctgcctccca agttcaaatg atcctcacac ctcagcctcc tgattagctg 000400 000401 ggactacagg cacacaccac caaccctggc ttgttttttt gtagggatgg ggtttcacca tgttgcccag gctgatcttg 000480 000481 aactactggg ctcaagcaat ctgcccacct cggccaccca aagttctggg ataacaggcg tgtgccactg cacccggccT 000560 000561 GGTTGTTTGT TTGTTTGTTT TTTAAATTGA TTCCtgttaa atgctgacaa taggtcagat aaagagttct cagagtagac 000640 000641 ctttggattt aactatatgg aggtcattgg taatcttgtc aaaagtagct tcttgggagt ggtggaggtg aaagcctatt 000720 000721 tcagatgggt ttcagagaga ttgggaggag aggcattgag tttagacatt tcttttaaga gttctacaga gggggcagaa 000800 000801 gaagtagaag gggaatgccg atgaggagtt ggcagagttt tctataagat ggaagagttt atgacccccc tgcccttttt 000880 000881 tttttttttt taataatgct actgggaatg acctaggaga aagagaaatt ggcaatgttc tttccttgaa gagggattgg 000960 000961 ccctatatat atgtgtactt ttatgagact ggaggaaagg cagagtacat agatgcttat gatgacaggt tcttagatag 001040 001041 tgcaggaact tgtggaagtg tttttttctg aatgcttctg ttttctcagt gaagtagaat gcacgttcag aatgaagata 001120 001121 gggaagtgtt cttagagatt tgaggacaaa ggagaaggta taaagtcatt atctatggaa gtgagggatt ggactagggt 001200 001201 gcaggccagt aaaacatggc ttgtgaacca aattctgcct gccctgtgtt tttggaaaca cacaaagttt tgttgtaacc 001280 001281 caagcatgct catttatctg ttgtctatgg ctgctttcct actggaatag ctgagttgaa tagttacaac agaaaccata 001360 001361 tggcttgcaa agcatacagt atttactctc tggcccttta cataaaaagt ttgctgacct ccagactagg gaaatctagt 001440 001441 ataatttcca ggcagcctta aaaactcttt agaagttaat ggtccagaat AATGACAAAT AGCTGATTGT TGAATTTCAC 001520 001521 TATCTTCATT GCCCCTGTTA GAGAGTTTTG AGCTGGAAAG ACCGAACTGA ACAAAGGATG TCAATGTATA GGtttcttcc 001600 001601 acaaatactg agctcttgct agatgccaga tactgtgcta gccttgggaa tTCTTGCTCT CAGGAAGCTT ACAATGAACT 001680 001681 TAAACCTGAT TAAAGACAAT TCATGAATAT ATGTGTGATT TCAAATAGAG AACGACATGC CCTATATTGC CTGACCAAAC 001760 001761 GGTGCATCAT CAAAGTTATT CAAACTGTAG TAGCCTGTGC TGTCTTACTT CTCTTCCTAT TCTGTATCAG ATCCATTGTT 001840 001841 GCTACCCCAA TCCTATAGCT CTTTGATTCA TGTCTGTTAT GTGGGTGGAT GGAGAACTCA CTTTATTACT GCTACCATAG 001920 001921 ATCTGATACT TCACCACTTG AATCTTGCAC AGAAACCAGA GAAGCTAGCT AATGCATGCT GTAGCATTTA AAAATTCCAT 002000 002001 GTGATACAAT TATGTATGAT TACATTTCAG TTTTGCTATA CTTTATATTT GGCTTGTATG ATTAAAGTAA ACAAAGTAAA 002080 002081 TTCCATTGTT ATAATTGGTT TTGAGTGTTA TAGGTTTATT CAAATCCAAG ATTTGATTAC AGTTTTGATA AGAGTCACAG 002160 002161 CTTAACAGGT ATCTGGAGTT CACATGTGCA TAGCTATTTC ACTGTATAAA AATAGATTAA GATATTTTGA GATTTTGGTG 002240 002241 ATATTTCCTG TTTTTAAAGT TTCAGGGGTG TGTCTAATTC TTCTTGGTGC TGGTTTATTT AACAGAAGTC TTAGTTTTTG 002320 002321 GATATTAATA TTGTGGAAAG TTAACAGAGC TGATGTCTAG CTGATCAAAC TCAAAATTAT GAAGCAATTG TGAAGCTTTC 002400 002401 GGATGGCTTT AATGGAGCAG ATCTGAGAAA TGTTTGTACT GAAGCAGGTA TGTTCGCAAT TCGTGCTGAT CATGATTTTG 002480 002481 TAGTACAGGA AGACTTCATG AAAGCAGTCA GAAAAGTGGC TGATTCTAAG AAGCTGGAGT CTAAATTGGA CTACAAACCT 002560 002561 GTGTAATTTA CTGTAAGATT TTTGATGGCT GCATGACAGA TGTTGGCTTA TTGTAAAAAT AAAGTTAAAG AAAATAATGT 002640 002641 ATGTATTGGT AATGATGTCA TTAAAAGTAT ATGAATAAAA ATATGAGTAA CATCATAAAA ATTAGTAATT CAACTTTTAA 002720 002721 GATACAGAAG AAATTTGTAT GTTTGTTAAA GTTGCATTTA TTGCAGCAAG TTACAAAGGG AAAGTGTTGA AGCTTTTCAT 002800 002801 ATTTGCTGCG TGAGCATTTT GTAAAATATT GAAAGTGGTT TGAGATAGTG GTATAAGAAA GCATTTCTTA TGACTTATTT 002880 002881 TGTATCATTT GTTTTCCTCA TCTAAAAAGT TGAATAAAAT CTGTTTGATT CAGTTCTCC |
Predicted Small Protein
Name | NONHSAT036899_smProtein_2183:2359 |
Length | 59 |
Molecular weight | 6734.1784 |
Aromaticity | 0.155172413793 |
Instability index | 41.625862069 |
Isoelectric point | 9.89410400391 |
Runs | 11 |
Runs residual | 0.0330617658204 |
Runs probability | 0.0352170352171 |
Amino acid sequence | MCIAISLYKNRLRYFEILVIFPVFKVSGVCLILLGAGLFNRSLSFWILILWKVNRADV |
Secondary structure | LEEEEEHHHHHHHHEEEEEEEEEEEELHHHHHHHHLLHHHHLHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooooooooooooo |