NONHSAT036939
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT036939 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3080 nt |
Genomic location |
chr14-:54039946..54080656 |
Exon number |
4 |
Exons |
54039946..54040340,54047638..54047717,54064583..54066901,54080371..54080656 |
Genome context |
|
Sequence |
000001 TGAAGCTCGG CTGGCCCCTG TGGGGAGTGC AGGAGGCTGG GGGTCTACTC CCTACGGTTC CCAGAGAAAT GGTAGCAAGA 000080
000081 AGACGGTGTT ATTTCTAATT GGATGATGAA AGTCAGCCTA GGGGACAGAG ACCAAAGGGC CATACGTAAG AAGAGGAGGA 000160 000161 AGTGAAAACA TCTGAATCAA AGGTTGAGGT AAAACTGAGA GACAGTGTTT GCAGTGAACC ATGCAGTAAC CTTCATCTTG 000240 000241 CCCCCTGGTC TTCAGGAAAC AAGCAAGTGG GGAAGGACCG AAAGAGGGTA CTAAATTTCC AAATGATCAG ACGTGAAGTT 000320 000321 TCATGGCCCA TAATGGCTAC ACATTTGAAG ACTCAAGCAA ATAAATTAGA AATAAAGCCT ACCAGCAAAC CAAAAGATAA 000400 000401 TTACATGTAA AAGCAAGTCT CCTTGATTTC TGATACTTGC ACTTATGAGA ATGAGAAAAC AACGATAGCA CAGAGAGATG 000480 000481 GTGGACATGG AGGACAGGTC CTGTAGGCTC ACTTCATGGG CTTTTTCATA CCCTGACCAC TTTCCACGCT GGATTCATTT 000560 000561 TACTGTAGTG AAACAATTGG CTGTAGATAA TGTTAAAAGA TAGGACTTTG GTAACAGGAG AATTCATGGA TTCTTGAAAT 000640 000641 TCCTGAATGG AACTGGCTCT CCAGAAGCTA CTTGCAGCTC AAAAGAGAAA GAGAGAGAGA AAGCAAGCCA GAGAAACATT 000720 000721 TGAGGTCATA TAACACTTTG TCTCCAATGT TCTCAAGGCC TCCCTCTGTG CACAGACCTC ACTTTGAAAT TACCACCTGT 000800 000801 CACAGGCCTA GCAAATCCCC TCACCAGAGA CCATGTCTAA TTCTTTGTTT TAAAGGGCAC TCGATGGTTT TCTCCAGAGA 000880 000881 AGTCATCATC ATCAGTGGCA GCAACATCCT ACTTTATTTA CACAGCTTAG CATAGGACCA TCCCCACAAT ATAACAAGAA 000960 000961 AGATTTGACC CTGTGGGCTT TTTCCTGTTC TAAATTTTCT CCTTTTGCTT GGACAAAAGG TCCATCATTT CTGAGAAAAA 001040 001041 AAAAGGGAGG ATGGGGCTGG GTAAGGAGAC TGCCACAGTA ACAGCGTAAT GCTATTAGTC TGAATTCTCC CATGACGGAG 001120 001121 CCCTCGCTGG GAAAGACAAT TACAGGCAAA AGGGTGATAA CCTCACGAGG CAATAACCTC CTGAGAGATC CTGTGCCACA 001200 001201 TGTACAGGTT ATTAATTTCA GGGAAGGAGC CAAACTTCAG GGGCCCTCTC AGAACCGACT CTTTCAAGGT TTGCCCATCT 001280 001281 CTAATGAGCT GGGTCTTTTT TGCGATTGTC TAACCACACG ATTTCCTTAA TTCTTAGCTG GTTGCATAAT GGCAAAGATA 001360 001361 AATGTGGCTT TTTCCAGCTG CTTCTAAAAT AGGTTCAAGG TTGAATTAAT ATGAATGGAA ATACTTTCTG TTCATGTAAA 001440 001441 GGGTTGGAAG AAACCGTATG TGTGGGATTT GCTGATACCT GCTAAAATGT ACACTGTGTG TCCTACATGG AGGACACAAG 001520 001521 ACGGGCAGAG GTGGAATAAT GACTTATAGG AGCCCCAAAG TCCTAAGACG GTGAAATTCC ACCAAATTTA TTCCATTTCA 001600 001601 GCAGGAGCTA GAATATTCCA AAATTCAAAA AAATGGACTT AGTTATAAAG GAATCTTTTC AGAAGTCTTG ACTCTCATCA 001680 001681 CATACTCAAT GTTAATTACC ATTTGTGTGT AGAACGGTGT GAATTAAAAC TAAAGAAACA AACAAAAAAC TTGCCTTGTT 001760 001761 ATTCTGCCAA AGGACCCCAT AATCTAATGA GGGAGAAGTG GCACCTGCAG ACCAAAGAAC ACACAAGATT TCGAAGGTGG 001840 001841 TTATTCCAAG TGAAAACACA CAACTGAAAA AGTCCATGAG GACTGAGTGG AAATTGACAA GAACAAGGGG AGTTCATCAG 001920 001921 GAACAACTTT TCCAGGAAAA CTTGAGGTTC AGATTTGAGA GGATAATATG GCTGGATGAA TAGGAGAAAA TAAGCTACTC 002000 002001 CAGAGGAAAT GAAGGAAGTT AAGACATGGA ATCACAATCC ATTTCACCTC TTTGTTCTTT TCTTTTAACC TTAACTGCAA 002080 002081 CCTTCCCCAT AGTAAGCAGA GGAAGAGTAG ATATTGTTTC TGTGGTTAAG TTACAGAAAG TGTGTTGCTT GCTAGGTACT 002160 002161 GCAAAGTATT TTTCTGTTAG TGACAAGCAA ATCATATCAA ATTGTTCAAA CTCAATTTCA ACTCTTATAA GAGGATAGAC 002240 002241 ATGGGTTTTG AGGAAATGGT TATCATTTGC CTTGTTATTA CCTCATCTTT GAGCCCCAAC ATGTGCCTTT ACTACTTATC 002320 002321 CCAGTGATTC TTTCAAAAAA TTATTTAATA AATCAAAATA TTCCATAAGT CAAAATATCT TCAGGTTGCG GATTTACCTT 002400 002401 TGACTTTCAT CTTAACCAAT TGTTTAAAAT TCCCCCATTC TCCTCTCATC TATTGTGTAT AAATTCAGAT TAAAATGTAG 002480 002481 TTAAATTCAT TAATGCTCAT TATTTATGTG TCTAAGACTG ATACTAATAA TGACAACCAT GTATTCGACA CTTTCCAAAC 002560 002561 TGCAGGCCGT AGGCTCAGTC CTTTGTTTTG TTAGTTTATT TAATCATGGG AAAAATGAGA CACAGAGTGA CTGAGCAATT 002640 002641 TGCCTGGAAT CACACAACTA ATACGTGGTA GAGTGAGGAC TCAAAGTCTT GCTTTTGGCC CCCAGGCTGG AGTGCGATGG 002720 002721 CGTGATCTCA GCTCACTGCA ACCTCTGCCT CCCAGGTTCA AGCAATTCTC CTGCCTCGAT CCCCCGAGTA GCTGAGATTA 002800 002801 CAGGAGCCTG CCACCATGCC CGGCTAATTT TTGTATTTTT AGTAGAGACG GGTTTCACTA TGTTGGCCAG TCTGGTCTAG 002880 002881 AACTCCTGAC CTCAGGTGAT CTACCCGCCT CGGCCTCCCA AAGTGCTGGG ATTACAGGTG TGAGCCACGG CGCCTGGCCA 002960 002961 GCGTTCTTCT CATTCTTCAT AGAGATCTCC ACGTCAATCA AACTGCTTAT ACCCATGCAT GACTTCATTA TATGTATTTT 003040 003041 TAAATGTTCT TATACAAATA TTTTTATCCC TTCATCAAGA |
Predicted Small Protein
Name | NONHSAT036939_smProtein_746:934 |
Length | 63 |
Molecular weight | 7111.3325 |
Aromaticity | 0.0806451612903 |
Instability index | 62.9725806452 |
Isoelectric point | 9.88787841797 |
Runs | 9 |
Runs residual | 0.00847926267281 |
Runs probability | 0.035388329506 |
Amino acid sequence | MFSRPPSVHRPHFEITTCHRPSKSPHQRPCLILCFKGHSMVFSREVIIISGSNILLYLHS LA |
Secondary structure | LLLLLLLLLLLLLEEELLLLLLLLLLLLLEEEEEELLLEEEEEEEEEEEELLHHHHHHHH LL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLL LL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooo oo |